LOC110497531 (LOC106609957)


Basic Information

Item Value
gene id LOC110497531
gene name LOC106609957
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 19626854 ~ 19642015 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036954416.1
GTGAGCCAGTCGAGAGAGCCGGAGAGCGAGAAACTGACGGAGAAGACTAGTCGGTTTTTAACATGGCGGAGACCGTACGCTCGCTCTTCGACTACCGTGAGCCACCGACCCTGGACAGCGACGGAGAGGGAACCAAACCGGCGCCAACACCTCGGGGaCGCGGTTGTGGGAGGAAAAGGAAGGGAACGCCGGTGAAAGTGTGCGACCGCGTCTTTGTaacagaggatgaggaggagagctCCGAACACAGCTACggtccagGTAATGGTAAAGGGGCTGCAGAGAACAAACGACCAACCCTGGATGGCCCATGCTACATCAATGACCCTGTTCAGATCTGCAGTGGGTCTTCAGAGTTGGGTGAGGAGGGATCCAGCGGGGGCAGGGGGGCGGCAGTGATGTACCCCCCTCCTCCAAACTGCCGCATCCGAGAGGTACACTGTGGGAGCCAGGTGCGTCTGGTCGTCATAGCGATCCGAGACATCACCAAGGGAGAGGAGATCACCGTTGACTACAGCCTGACCGAGTGGGGAGACAACACTATGGGTTTCCGTGGTACTGTCTCCTCAGGGAGATATGAGTGTATCGCTGACCCTGAGAACAACCGTATCAAAAAGgagGAAGAATCCGGGCTcgtgccctcctctctctcagcccagGACTACCTCACCCCTTCCTGGCCCctgtccccctcttcctcccccctctcccactccaacGCCAGCGACTCGGATCCCCAGAATGAGGAGGGCGAGGACGGGGGTCAGAGACGCACACCTCGCCGCCGAAAACGCCGCCGGACCACCACACCTTCCAAAAAGAGAACCACCCCTCACCGGACATCCCCGGGccgccctcccctctcctcttcataccgccccctcaccttctccccccctccctcctcctccacctcttctcgcCCTTCTCTGTTCAAATCCCCCGCTCCGTTGGGGCCCAACACGACGGCGAACATCAGTATTAACATCGCCAGGGGGGTTGGCATGGGCGTGCCCCCCCAGAAGCTGAGCTGCGCCTACTGCGGCCGCCACTTCCGCTCACTGGGGCGCCACCTGGACAAGCACCACACCAACCAGCCTGAGATCCGCGCCGCGCTCATCGAGCGCTTTATGCCCCACCTGGCGGCCGCGCACGCCACACACCACACTCAGTCCCAGCAGCAACCTCGGTCATCATCAGGAGTGGAGCAAAACTCCCACAAGCCACCACCGGGGGGCGCCACCGCGTTCTCCCTGTCTCCTCAACGTCCGGCCGCCCAATCCCCTTCCTCCGCCGTTGGGGGAAACTCCTCCCCCCTGGTATTGACTCCACCCCGAGGGCGCAGTGCGGTGGCCGTGTCCGTTCTGAAGAGAAGCCCGCCTCCGGCGGCTGTGAACCCGCCCAGAAAGGCGGGACTGCGCAAAGTGAAGAaggaaaaagaggaggaggaagaggagaacgaTCTGGTGGAAGTTGAGGTGGTGAAGCCCAAAGAAGAGGCAGAGGCGGCTTTTCCCCACGTCTTTCAGCAGACGCCCAAGGAGATGGAACGGCTGCCGAAAGAGCATGaaaatgaagaagaggaggaggcgaACGGTATGATGGAAGACGACAGTGGAGCGGAGGATAAGGAGAAGGAGTTATTGAGttCGGGACGTCTCCACATgctgcccctcctctcctccctgtcttccCTGGTCCTCTACCTCCGCAGGCTCCAGCACTCTGCCTTCCTCTCCCTGTCCCGCCAGCTCCAATCCGCCGAGGCCTGGCGCCTCCTGTGCCACTCCTCCCTCGCCCTGCTCATACTCTACAATCGTCGCCGCGAGTGCGAGGTCTCCAAACTGGCCATAGCCGAATACCGCTCCCGTGTCACCCCCCAGTGCCCCGTGCCAGTGCCCCCCGGCGCCCCGCCCGCCCTCACACCCCTGGAGGCATCGCTTTCGCCCTTTGAGCGTCTCGTGCTTCCACATTTGCCTCGAGTAGGTGTCCAGGGCAAACGAGGAAGAGTCCAACCTCTTATCCTGCCACCGCACTGCGAGCCGTGTCTGGAACTCCTCCTCCAGACCAGGCAAGATGTCGGCGTCGATCCCCAGAACCCGTACGTCTTCGCCCGGCCGTACCACTCCCCAGCCACCCCCCTCCGTGGCACCGACCTCCTCCGGAGCCTGGCCCGCTCCAGTGGCACCCGGAACCCCCGCGCCCTCACCCAGACCCGAGTCCGGCGCCAGGTCGCCATCTTGACGCAGCTGCTATTGCTCGGCGAGGGGGAGGAGCCAGGACAGCCGGGTGGGAACGCCGTAGAGCGCCTGGAACACTTCCTGGAGCGTGAGTACCACGTGACGCAGAGCTGCGGCGGGATTGGCCACGACCCGGGGCTGATGGGTAGAGTGGGGCGCGTGGTGCTGTGCGGGGAGAGAGACGGCGTGCTGTTCCGGGGGATGAGCCTCCACCACATCTGTCTGGAGCTTGACGTGATGTCAGGCAACTCGGCCGACTCGTACTCGGAGGGCGACTCTGACGGCGAGGGGCGGAAGGAGAAGGGCGAGGTGGCCTCTCCCAGCCTGCTGATGGTGAGGAAGGGCAGGACAAACAGCAGGACGCCGCGTGCCAGGAAACTCAAGGTCACGCCCTCCTCCACATCgcccctctccccctcgctccccGGCCGCAGAAGAGGCTCAGGTGGGCCCaaatcagGAAAACGCGGCGTCCTCAAGCGCCCGTGGTCGGACGCAGAGCGCGCCGCTGTGGAGGAGCACCTGACCTGCAACATCGCTGAGCTGCGCGTGCCTGCTAAGGCCGACTGCGAGCGCTGCCTGCAGAGCTGCCCGCTGCTGGTCACCAACCGGCGCGACTGGCGGGCCATCAAATTCTACTGTCACAACCGCATCCAGCTGCTTAAGAAGAACCAGCGGCGTGAGGACGACGGGACGCCCATCATGGTGTGCTGAGAAGACTGGCGGAGAGACTGAGagatagatggacagacacaacAATAGCTCCACAGTATCCACAATAGCGTGCTACTTGGAATGAAGGAAGCCAAAACAGAGGCGTGGTCAACTCCGTAACGTTACTGCAGTGACTGTCAACTCTGTAATATTTTTTCCGCTGACGGTCCAAAAACAAGAGTTGATGCTTAAGGAACAGAGTTGACGCTTAAGGAAGCAATGTAGTGGGCGTGTCTTTGAAGTGGTACGCTAATGTGGGTATTGGAATGTAGCCTACATCTCATTaagcaggtttccatccaacctttttatgtagTAAAGTACGGGTCAATGTCGGGTCAAAAATGTagtgacaggcctgatggaaacaacATTTTTCGGTACACTTTCCAAATGTCAACAAAACgaaatacgctagacaaggtgggatattttgtgtcggtaaaatgaaGTATGCGAGAAATGTCGGTGGAACTATTGatgtaataaccatcatatcgaagtaatcTTGGGGTCGCGCGATGACATGTGTGGCCCTCCCACTACGGCGCgtcaggaaagcatgcagtttattaggctacagattaaatacattgggatgaacttcacagggtggtgaaagtgcaaggtgatgagcttgatgctcctgtttaataaatatcaagggtcttattTTGGTGATCATCGATGCGTGGcagccgtttgacaaataaagaAAACTCGCTCTTTTGGccataataatctcatgtagCCTATACGTGTGTTCTAGCCAACAGTGCGCACGTGCCAGTACCAGAGTGGGCAGACTCGCTATATAACAGAACAGTTTTTGTGGGAAAACCCATctgtagagttgaaaatgtgatggaaacccatttaacttattttttttatttggtacatgggaatttaacagcAAAAGGTATTTGTATGTGCACTACATCATCACGCacagtcaatttgatggaaacgtgtctctggtgggaaaatgcacagATTGTTTTTGTGCGGATTTGAGAatatctgtcaccaattggatggaaacctagctattgatACACTTATATATTGTCCTCTGAGACAAAAAGAGGTAGAGACTgggggagtgagagaaggagtgACTGTGTAGGAGTGACAACAGCCTGTGTTGTGTATGTGGACATTTTAATTTAGTTTTCGCTTGAAAACGAGATGAACAATGTTCAGTACAACAGATTGttgtatttagattttttttggacTCCGGTGTTTTTGACATACTCAAGTGTTGTATGGACGTTTCTGAACACACTCAAGTTAACACTATTAGGGTTTGaggctgtagtgtgtgtgtgtgtttccagtgcTGAGAAGATGTTATAGGGTCTCCAACACCCAGTCCTGGAGAGTGCATGCTTTAGTTCCAGTACTAACTCACCCGATGAAACTACACCTGACTGAAAGACCATGGCTAGATCATTATTTAAAACGGGTGTGTTAATAGCGCTGAGCCGCAGCAAAAGCCTGCACCCCAGGAGCGGAGCAAGAGAGCCCCTGGGTTAGAGTGAAGGGGGGGTGAAGGAAACGCCACCATCAGTGTGTTGTAAATTTTCTTTTTGGACTACCTAAGACACTGTATAGTCAGTTTGGGGCTTTTCCCCGCTCCCTCCTTCAAAATGAACACTACAAGACAGCAATTGAATACTGCTTTGCCTAAAATACACCAAGTATATTCTTGTTGTTGACATCTTTCTTTTATTTTGTGCCTGTTGCACGTGTTTTCTTAAAAGCGCTTTGAAAAGGTGCATTAGGCCGTCGGGCCATTCTTCTGCGACGAGCAGAGTTCTGTATTTAACTTGGCTGTGTTCTTCAAAGTGATTTTTGGGGGGGCAATCTTTCAGAAGAGTGGGCATAGCTGAATACTATGCCACGCTATGGTTATTTTTTTACATGCAGTGTTGTTGCGTCATTTGTGTTGATTGTTTTGCCTTTTCAGACTGACCAGTGTAGCTCCAGTCTTTTTTCAGCAACTCTGGTTTCTATCGTTCACTGCTGTTAGATGAGCTGCTTGTAGCTCTAGTCCAGGGTGTTAGTGTGGCTTGCTAACTCTTAGGCTGGCATTCAATCCGATCAGTGGTAGATTTGCATTATAGCACGCTTGACATTTTTTAAAGTAATTTCCGATTAAGCCGACATATACAGAGTTTGcggaaacattgcctttaaaaggtgcataGCTGACAAAGTGCGGTCGGGTGGAATCCCGGCTTGAGCCTTCACAGCTTTAGCTAGTCGCActaacgccctggaccagagctaggctTCTTTGTAGGTCTGCCGGAGCCCCAAGTAACCCGGCATTTTGTCTTATTGGATTAAAACCGCACAACACCTCTTGATAGATAGTTGAATTTATTTAACATAATCACATATAATCTTACATTGTTTCATGCTATCATCTTGCCAGTTTCGgtgtacataaaaaaatatgatCATTACGTAAACTGGTTTGTTTGTGCTGTCCGTAGTTTATTTGTTCATTTGCGAGTTGGTATTGTACATAGGTCTATGGTTTTGTAAatattcacagaaatgcataaaggGGAAAAAAACTACA
>TU1831196
atggacagacacaacAATAGCTCCACAGTATCCACAATAGCGTGCTACTTGGAATGAAGGAAGCCAAAACAGAGGCGTGGTCAACTCCGTAACGTTACTGCAGTGACTGTCAACTCTGTAATATTTTTTCCGCTGACGGTCCAAAAACAAGAGTTGATGCTTAAGGAACAGAGTTGACGCTTAAGGAAGCAATGTAGTGGGCGTGTCTTTGAAGTGGTACGCTAATGTGGGTATTGGAATGTAGCCTACATCTCATTaagcaggtttccatccaacctttttatgtagTAAAGTACGGGTCAATGTCGGGTCAAAAATGTagtgacaggcctgatggaaacaacATTTTTCGGTACACTTTCCAAATGTCAACAAAACgaaatacgctagacaaggtgggatattttgtgtcggtaaaatgaaGTATGCGAGAAATGTCGGTGGAACTATTGatgtaataaccatcatatcgaagtaatcTTGGGGTCGCGCGATGACATGTGTGGCCCTCCCACTACGGCGCgtcaggaaagcatgcagtttattaggctacagattaaatacattgggatgaacttcacagggtggtgaaagtgcaaggtgatgagcttgatgctcctgtttaataaatatcaagggtcttattTTGGTGATCATCGATGCGTGGcagccgtttgacaaataaagaAAACTCGCTCTTTTGGccataataatctcatgtagCCTATACGTGTGTTCTAGCCAACAGTGCGCACGTGCCAGTACCAGAGTGGGCAGACTCGCTATATAACAGAACAGTTTTTGTGGGAAAACCCATctgtagagttgaaaatgtgatggaaacccatttaacttattttttttatttggtacatgggaatttaacagcAAAAGGTATTTGTATGTGCACTACATCATCACGCacagtcaatttgatggaaacgtgtctctggtgggaaaatgcacagATTGTTTTTGTGCGGATTTGAGAatatctgtcaccaattggatggaaacctagctattgatACACTTATATATTGTCCTCTGAGACAAAAAGAGGTAGAGACTgggggagtgagagaaggagtgACTGTGTAGGAGTGACAACAGCCTGTGTTGTGTATGTGGACATTTTAATTTAGTTTTCGCTTGAAAACGAGATGAACAATGTTCAGTACAACAGATTGttgtatttagattttttttggacTCCGGTGTTTTTGACATACTCAAGTGTTGTATGGACGTTTCTGAACACACTCAAGTTAACACTATTAGGGTTTGaggctgtagtgtgtgtgtgtgtttccagtgcTGAGAAGATGTTATAGGGTCTCCAACACCCAGTCCTGGAGAGTGCATGCTTTAGTTCCAGTACTAACTCACCCGATGAAACTACACCTGACTGAAAGACCATGGCTAGATCATTATTTAAAACGGGTGTGTTAATAGCGCTGAGCCGCAGCAAAAGCCTGCACCCCAGGAGCGGAGCAAGAGAGCCCCTGGGTTAGAGTGAAGGGGGGGTGAAGGAAACGCCACCATCAGTGTGTTGTAAATTTTCTTTTTGGACTACCTAAGACACTGTATAGTCAGTTTGGGGCTTTTCCCCGCTCCCTCCTTCAAAATGAACACTACAAGACAGCAATTGAATACTGCTTTGCCTAAAATACACCAAGTATATTCTTGTTGTTGACATCTTTCTTTTATTTTGTGCCTGTTGCACGTGTTTTCTTAAAAGCGCTTTGAAAAGGTGCATTAGGCCGTCGGGCCATTCTTCTGCGACGAGCAGAGTTCTGTATTTAACTTGGCTGTGTTCTTCAAAGTGATTTTTGGGGGGGCAATCTTTCAGAAGAGTGGGCATAGCTGAATACTATGCCACGCTATGGTTATTTTTTTACATGCAGTGTTGTTGCGTCATTTGTGTTGATTGTTTTGCCTTTTCAGACTGACCAGTGTAGCTCCAGTCTTTTTTCAGCAACTCTGGTTTCTATCGTTCACTGCTGTTAGATGAGCTGCTTGTAGCTCTAGTCCAGGGTGTTAGTGTGGCTTGCTAACTCTTAGGCTGGCATTCAATCCGATCAGTGGTAGATTTGCATTATAGCACGCTTGACATTTTTTAAAGTAATTTCCGATTAAGCCGACATATACAGAGTTTGcggaaacattgcctttaaaaggtgcataGCTGACAAAGTGCGGTCGGGTGGAATCCCGGCTTGAGCCTTCACAGCTTTAGCTAGTCGCActaacgccctggaccagagctaggctTCTTTGTAGGTCTGCCGGAGCCCCAAGTAACCCGGCATTTTGTCTTATTGGATTAAAACCGCACAACACCTCTTGATAGATAGTTGAATTTATTTAACATAATCACATATAATCTTACATTGTTTCATGCTATCATCTTGCCAGTTTCGgtgtacataaaaaaatatgatCATTACGTAAACTGGTTTGTTTGTGCTGTCCGTAGTTTATTTGTTCATTTGCGAGTTGGTATTGTACATAGGTCTATGGTTTTGTAAatattcacagaaatgcataa

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036954416.1 False 5550 mRNA 0.54 9 19626854 19642015
TU1831196 True 2551 lncRNA 0.42 1 19639448 19641998
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110497532 LOC106609956 coding upstream 7478 19603748 ~ 19620028 (+)
LOC110497534 LOC106609954 coding upstream 35412 19585072 ~ 19591442 (+)
LOC110497473 NA coding upstream 268404 19343155 ~ 19358450 (+)
LOC110497472 LOC106609985 coding upstream 298505 19326377 ~ 19328349 (+)
LOC110497470 LOC106609950 coding upstream 323980 19293883 ~ 19302874 (+)
LOC118941465 LOC106609958 coding downstream 59802 19701817 ~ 19702322 (+)
LOC110498684 LOC106609958 coding downstream 60688 19702703 ~ 19707315 (+)
LOC110497530 cdk2ap2 coding downstream 80958 19722973 ~ 19729929 (+)
serping1 LOC100136072 coding downstream 103445 19745460 ~ 19751328 (+)
LOC110498681 LOC106609965 coding downstream 172485 19814047 ~ 19840884 (+)
G1599314 NA non-coding upstream 11420 19615197 ~ 19615434 (+)
G1599310 NA non-coding upstream 15079 19611501 ~ 19611775 (+)
G1599305 NA non-coding upstream 18978 19607578 ~ 19607876 (+)
G1599247 LOC106609955 non-coding upstream 31351 19594384 ~ 19595503 (+)
G1599328 NA non-coding downstream 21870 19663885 ~ 19664131 (+)
G1599414 NA non-coding downstream 199425 19841440 ~ 19843530 (+)
G1599421 LOC106609964 non-coding downstream 208129 19850144 ~ 19851166 (+)
LOC110497526 NA non-coding downstream 224175 19866114 ~ 19874626 (+)
G1599186 NA other upstream 208337 19392291 ~ 19418517 (+)
G1598961 LOC107681197 other upstream 293404 19333020 ~ 19333450 (+)
G1598960 NA other upstream 294634 19331741 ~ 19332220 (+)
G1598786 NA other upstream 593678 19032885 ~ 19033176 (+)
G1599434 LOC106609964 other downstream 205867 19847882 ~ 19848518 (+)
LOC110497521 LOC106602766 other downstream 402577 20039547 ~ 20046898 (+)
G1600166 NA other downstream 768658 20410673 ~ 20410899 (+)
G1599321 NA non-coding upstream 6516 19632548 ~ 19632932 (+)
G1599320 NA non-coding upstream 7020 19632219 ~ 19632428 (+)
G1599317 NA non-coding upstream 11219 19627952 ~ 19628229 (+)

Expression

LOC110497531(LOC106609957) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
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LOC110497531(LOC106609957) Expression in each Bioproject

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LOC110497531(LOC106609957) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 200.
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Co-expression Network