LOC110498684 (LOC106609958)


Basic Information

Item Value
gene id LOC110498684
gene name LOC106609958
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 19702703 ~ 19707315 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036954417.1
TCCGTTTTGTGAATAGCAGCTGGTGGTTCGGGAAGGGAATGTGCCACATCAGCCGGTTCGTCCAGTATTGCTCCCTGCACGTATCCACACTCACGCTCACGGCAATCGCGCTGGACAGACGCCAGGTCATTCTCCACCCTCTGAGGCCCCGCATGTCCCCGGCTCgcggtgttgtgtgtgtgattcttATCTGGGTCATGGCCAGCTGCTTCTCCTTGCCTCATGCCATCTACCAGGAGCTCCTAACCTTCgtgtacagTAAGGAGAAGGTGCGCAGCCTTTGTGTCCCCGACTTCCCCGAGCCCTCTGACGTCTATTGGCAGTGCATTGACCTCCTCACCTTCATCCTCCTCTACGTCCTACCCCTCCTCATCATCACGGCCGCCTACTCAACCGTGGCTCGCCGCCTGTGGCGCCGTAACGCTATCGGGGACACCACCACTGCGCAGTTCGCTGTGCAGCGGCGGAAGCGGCGGCGCACCCTGGCTATGTTGTTGGTGGTTGTTGGGGTGTTCGCGGTATGCTGGTTCCCTCTGAACTGCTACGTGGTGCTTCTCTCCAGCCAGGCCATTCAGTCATCCAATGCCTTGTATTTCTGTTTTCATTGGCTGGCGATGAGCTCGACGTGTTACAATCCCTTCATCTACTGTTGTCTGAACCCCGCCTTCCGCCAGGAGCTAAGGCTGCTATTGGGCATGTGCCGGAGGAGGGGGCGTGGAGGGGTGGGGCCGGTGCTGGTGGCTCCACCCTCCTGCGCACTCTGCCACAGAGCCGCCTGGCCGGAGAGCCGCACCTGTTCTCGTCCGAGTCACGCCTCTTCACACCCGAGCCGCGCCTCCTCTCGGCCAAGCCACTCCTCGTCCTCTCACCAGCTTCCTAAAGACAGGCATGTCCTTTTCTCTGCTAGACATGCCAATAAAACAGACATCCTATCAGTGGAGCCTATAGTAGCTGTCAGTTAACTACAACTACAACCTGTTGAAGGACTACGTTATTAGCTAAAGACAGTTGGGGCTCTAGAACAGGAAATGTATTATCTTTTAACTTTCATGACAGCGCCACCTTCGGGAAGAAAGGTTTCACATTGATGGGAACAGGGTGTGGTGAGTTCTGGCAACAAATGCAACATCCAAACGAACAACTACTCTGTTAGCACATAttgtgtacactgagtgtacaaaacattaaggacactttcctaatattgagttgcacccccccccccttttgccctcagaacagcctcaatttgtcagggcatggactctacaaggtgtcgaaaaaattccacagggatactggcccctgttgactccaatgcttcccacagtggtGTCAAGTAAGCTGTCAAGTTGGCTGTATATCCTTtcggtggtggaacattcttgatacaggtgggaaactgttgagcatgaaaaccccagcatcgttgcagttcttgatacaaacaTGAGCGCCTgccacctactaccgtaccccgttcaaaggcacttgtcGGACGGAGCTAGAGTTTGAAGGAACAATCTGTAACTTTCCCTTCCAGTCAAATGTGCTATCCCTGCACTCTTGTATACTGTGGCGGTGGGTCTCGCTTGGCAAATGTAACCGAAGGTTACCCACAGAATTGAAGTAACTCTGTAGCAGGTTCTGTACATTTGCCAAGATCCACTCCTAAAGTTTACTACAAACAAGTGCAGGGGAAACACTTTTAACCTCTGACTGTACATGAAAGTAGCAGATCGGACCTTTAACAACTGATTTAGTTCAGGGCCATGGGAAAGAAGAATGTTATGGAGGTGGGGTGAAGATTATTTTGCTCCAGATGTTTCCTCCCTACATCTGCTGGCAGTCCCTGTGTAAGATACAGGTTGAAACATGGACAGCTGACTGCACATGTGGTGGTAGCTATTAGAGATATTCTCTTGTACTTTTGTGGCCCCCGAAAATGTGAACCACGTCATTGCGgtctctcgctctgctgtgtgtgatttttgctagctgtcactcaaatggcgaggGGCTCAAGCTCATTGGCCAAAACTctaattgctagggggctggcccacgtggGGGTAAATGTAAGGAAAATGCCACTGCACAGCTTCCTGAAAACAGTCCCTTTCAACctagggattttgtggctaattgacataaaatagtaattctgctcatagattatgtatgtactgtatgtatacatattgacacatccagcccaaagtggGAGGTTAAAAAAAGACTACAAATACTAGTTGCCAAAGTACCAGAGCATAAATATGCATTCAGTTGGATAAATAAATGAAAGTTACAGACCAAACCTTTTAAGAACTGATTGAGTTCAGGACTGTGCAAAATAAGAAAGTGGAACACTATACTTGACAGAAGGAACCCTATAggcctggtcaaaaatagtgcactaaaggggaatagggtgccatttgggacctttCCTATAAATGAGAAGGCTACTGCTTGAATGCTACGTTATGCATTAGCTTGTTGGAAATTAGGCACTCAGTAACCTTGTCCGCAGGCACAATTACAGAGGGAGCCGGCTGGTGGACAAGATGAGGCCCTCAGAGTCAAAGGGTTCTGTGATGCTGTTGGTGGTACAGTCAACCAGACCGTGGatacaattgtatttgttttctttaaaaCACTTTATATCCATTTCATTTAGCTGACCAAGAGCACCAGGTGGGTGggttttgcacttttgggactattctgtTGTAGGGCAAGCTAAAATCAAGCGCACTTAAAGTATGTGACATAAAACAAGTTCCTCCAAGACCTGATGGTGATTTGAACATGTCTGTGTTAATGTTTTGTTCTTAATTCATTTGAATGGTGAGCAGACCAGGTGAAGAGTGTGAGCATCTGTGACATGATGCTCACGTGTACAGACGACAATGATGGTGGTTTAAACCTGACATTTGAACATGCTTGTGTTGATGTTTGGTTTCATTAAAGTTGTTCTTGTTTTGCATGTTGATGCCAGGGTATGATGTTAGATGGTAGTAACAGCAGGCATGAGCATCTGTAATATTATGGTTTTGTGATGTAAATGTGATGTGGGATCTTAATTGtgaattctccctctctctatctgtgctTTCTGAGATCCATTGCCTTAACTCATAGtgcacataaactcagcaaaaaaagaaa

Function

NR:

description
PREDICTED: probable G-protein coupled receptor 83

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036954417.1 True 3171 mRNA 0.48 3 19702703 19707315
Loading

Neighbor

gene id symbol gene type direction distance location
LOC118941465 LOC106609958 coding upstream 381 19701817 ~ 19702322 (+)
LOC110497531 LOC106609957 coding upstream 60688 19626854 ~ 19642015 (+)
LOC110497532 LOC106609956 coding upstream 83327 19603748 ~ 19620028 (+)
LOC110497534 LOC106609954 coding upstream 111261 19585072 ~ 19591442 (+)
LOC110497473 NA coding upstream 344253 19343155 ~ 19358450 (+)
LOC110497530 cdk2ap2 coding downstream 15658 19722973 ~ 19729929 (+)
serping1 LOC100136072 coding downstream 38145 19745460 ~ 19751328 (+)
LOC110498681 LOC106609965 coding downstream 107185 19814047 ~ 19840884 (+)
LOC110497526 NA coding downstream 158799 19866114 ~ 19874626 (+)
LOC110497524 LOC106609967 coding downstream 171305 19878620 ~ 19903005 (+)
G1599328 NA non-coding upstream 38572 19663885 ~ 19664131 (+)
G1599321 NA non-coding upstream 69771 19632548 ~ 19632932 (+)
G1599320 NA non-coding upstream 70275 19632219 ~ 19632428 (+)
G1599317 NA non-coding upstream 74474 19627952 ~ 19628229 (+)
G1599414 NA non-coding downstream 134125 19841440 ~ 19843530 (+)
G1599421 LOC106609964 non-coding downstream 142829 19850144 ~ 19851166 (+)
G1599487 NA non-coding downstream 279189 19986504 ~ 19989016 (+)
G1599186 NA other upstream 284186 19392291 ~ 19418517 (+)
G1598961 LOC107681197 other upstream 369253 19333020 ~ 19333450 (+)
G1598960 NA other upstream 370483 19331741 ~ 19332220 (+)
LOC110497472 LOC106609985 other upstream 374374 19326377 ~ 19328349 (+)
G1598786 NA other upstream 669527 19032885 ~ 19033176 (+)
G1599434 LOC106609964 other downstream 140567 19847882 ~ 19848518 (+)
LOC110497521 LOC106602766 other downstream 337277 20039547 ~ 20046898 (+)
G1600166 NA other downstream 703358 20410673 ~ 20410899 (+)

Expression

LOC110498684(LOC106609958) Expression in all Baseline Samples

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LOC110498684(LOC106609958) Expression in each Bioproject

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LOC110498684(LOC106609958) Expression in each Sample
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Co-expression Network