serping1 (LOC100136072)


Basic Information

Item Value
gene id serping1
gene name LOC100136072
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 19745460 ~ 19751328 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001124379.1
GGTGAGAgtagggaagggaaggaaggacacacacatactgaacGCACGCAGTAGGACGTGAACCCTTTTTTTTCCAGTTGAGAAAATATATCATCATCTTACTCAGACTATTTCTGATGCTGTAATATTTGCAAGTGACCTGCAGTATGGGGATTTCAGTCCTATCGTGTGTCTCCCTCCTGCTTGTCTTTGAGctTTTCTCTTCTTCCGTTGGGGTCCTGCAAAGTGTACCTGGCTCCACCCTGGTCTTCCCATGTCTCCCTGGCCAAAACCAAAAAAGCTTTGCTGGGGCTAAGATCACCTGGAAATACAACGACTATCTGGTTCCCGACTACCCAGAATCCTCAAAGGAACTCAAGGCCTCCAAGGATGGCTTCTATCTGGAAATCTCTCCCGTCAGTGTAGCCAACGAGGGGGAATATGAATGTGTGATCAAGCAGAATGATATGGAGTGGCAAAAAGTGCACATAGTCCAGGTTGATGtgtCCAGCAGCTACATTCTCAAAGTAATCGAAGGGTCCACTGTGAATTTACCTTGTGATCGCCCACCATCCAGCAAAGACCCGGTCCATTGGTACAGATATGATAAAGGAATGACGAACGGCACACGGAAGCAGTTGAATCCTGCAGAGACTGGAGAAATGGTGGAGGGTGACAGACTAGAATGGCTTTATGGCCCCCTTGAAAAAGATATGACAATCACACTTAATGAGGTCAAAATGGAGGATGCCGGCATGTACTACTGTGAGACAGCTGAGCAGGGCAGAGACAGCAGCAACTTTAATACAATTGAGCTAATTGTGGAAGCTGCGCCCACCGTTCTTCCTTACTCCTGCGTTGGGTTCATGACCCCCTGGGAATCGTGCCAGGACGAGACCAGCAGGTCGTGGGAGGCCATGCTAGGAGAATCCCTCAATGAGTTCTCCATGAAGCTTTATGCCCACCTCAGCCAATCACAGCCCATGAAAAACCTGCTCTTCTCTCCAATCAGCATCAGCGGGGTGTTAACCCACCTGTTACTAGggGCTCGTGGCAAGACAAGGAGAGACATGGAGacggctctctgtctgtctcacgacTTCTTCTGTGTTCATTCCGAGATGAAGAAACTGAAGCTGAAACTTCAGGACACACTGAAGATGGCCTCCCAGATCTATTACAACCCCAataTGAAGTTGAGTGAGTCCTTTACCAACCAATCCATGCAGTTCTACGATGCGGATCCAGTCAAATTGACCAATACCAGTGAGGTAAACGTGGAAATGATCAACAGTTGGGTTGCAAAGCAGACAAATAATAAAATCAAAGAGCTGGTCGACTCTGTTCCCGCCCACACCGAACTGCTACTCCTCAATGCTGTGTATTTCAATGGTCAATGGAAGATGAAATTTGATGCAAAATCCAAAACGTTTCCATTTGTGAAACTGAATGGTGATACTGTGAAGGTGCCTGTCCTCTACAGTGCCAAATACAAATTGGCTGTGCAATATGTCCCGGCAGTGAAGGCACAGGTGGCGATGTTCCCTCTCTCTGGTGCAAGTAGCTTGTTCATCTTGCTCCCGCCCACTACCAAGCTCACAGACCTGCAATTGGTGGAGGGGAAGATGACGGACAGGGCAGTGAGCCAGATGGTGGAGCAGATGAATCAGGTGTCTCCCCAGGCCACCGAGGTCACTCTTCCCAAAATCAAACTGGACATCCGGACCGAGATGAACACCCTGCTCAGGAAGATAGGTTTGTCGGAGCTGTTCGACAGCGCCAACCTGTGTGGCCTCTACCCCGACAACGAGTTGCTCCTGACGGAAGCCCGCCACCGGGCCTTCCTCTCCCTGACGGAGGAAGGTGTGGAGGCTGGGGCGGccacttccctctctttctcccgctccttctcttccttctcagCCCTCAGGCCCTTCCTGATGATACTGTGGAGCGACCAGGCCAAGGTCCCACTGTTCGTGGGTCGAGTGACCGAGCcgtgagagaaggaggaagagagagggagagagggtagcaTGCATATAGAAAAAAGCCATGTTTGCAAAAGAAAAGGACAACTTCCTTCTATGAAGTTACATGTTCATTGTAACTTCGTAGAGTGACTGTCAAAGTGTTTTAAAATAAATACTCGGGAGGGCTTGCTATAGGTTGTCACAAAATGCATGACTTATCAAAAAATAAAAGTTGACATCTCTCCA

Function

NR:

description
plasma protease C1 inhibitor-like

GO: NA

KEGG:

id description
K04001 SERPING1, C1INH; C1 inhibitor

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001124379.1 True 2198 mRNA 0.49 10 19745460 19751328
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110497530 cdk2ap2 coding upstream 15531 19722973 ~ 19729929 (+)
LOC110498684 LOC106609958 coding upstream 38145 19702703 ~ 19707315 (+)
LOC118941465 LOC106609958 coding upstream 43138 19701817 ~ 19702322 (+)
LOC110497531 LOC106609957 coding upstream 103445 19626854 ~ 19642015 (+)
LOC110497532 LOC106609956 coding upstream 126084 19603748 ~ 19620028 (+)
LOC110498681 LOC106609965 coding downstream 63172 19814047 ~ 19840884 (+)
LOC110497526 NA coding downstream 114786 19866114 ~ 19874626 (+)
LOC110497524 LOC106609967 coding downstream 127292 19878620 ~ 19903005 (+)
LOC110497523 LOC106609968 coding downstream 177880 19929208 ~ 19947523 (+)
LOC110498679 LOC106602767 coding downstream 209338 19960666 ~ 19986083 (+)
G1599328 NA non-coding upstream 81329 19663885 ~ 19664131 (+)
G1599321 NA non-coding upstream 112528 19632548 ~ 19632932 (+)
G1599320 NA non-coding upstream 113032 19632219 ~ 19632428 (+)
G1599317 NA non-coding upstream 117231 19627952 ~ 19628229 (+)
G1599414 NA non-coding downstream 90112 19841440 ~ 19843530 (+)
G1599421 LOC106609964 non-coding downstream 98816 19850144 ~ 19851166 (+)
G1599487 NA non-coding downstream 235176 19986504 ~ 19989016 (+)
G1599186 NA other upstream 326943 19392291 ~ 19418517 (+)
G1598961 LOC107681197 other upstream 412010 19333020 ~ 19333450 (+)
G1598960 NA other upstream 413240 19331741 ~ 19332220 (+)
LOC110497472 LOC106609985 other upstream 417131 19326377 ~ 19328349 (+)
G1599434 LOC106609964 other downstream 96554 19847882 ~ 19848518 (+)
LOC110497521 LOC106602766 other downstream 293264 20039547 ~ 20046898 (+)
G1600166 NA other downstream 659345 20410673 ~ 20410899 (+)
G1600167 NA other downstream 659705 20411033 ~ 20411311 (+)

Expression

serping1(LOC100136072) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 2000.
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serping1(LOC100136072) Expression in each Bioproject

Bar chart with 19 bars.
serping1(LOC100136072) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 60000.
End of interactive chart.

Co-expression Network