LOC110497510 (LOC106610025)


Basic Information

Item Value
gene id LOC110497510
gene name LOC106610025
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 21993043 ~ 21996218 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021573647.2
CTACATATACAGAACATTGTCAGTGGTCCTCTACTCATGTAGGCTACTGATGCTGAAGAACACCTGGATGAAGGAATTGCAGCTCAACTTTtcgatatattttttttttatcttagatcatttgtattttatttaggCAACAACTATGAATTACTACATTCTGTCCTTAATATGGGCGATAACATTACCTGCGTGCATGGCCATCCAGGGATTATACAATTTCGGTCAGCCCGAGTTATTCTTCAAAAAGAATAACTGCAAGCCCATCCCGGCCAATCTTCTCTTGTGCCATGACATCGAATACACCGAGATGCGCCTCCCGAATCTTCTCGGGCACGAGACCATGAACGAGGTTTTGCAGCAAGCCTCTTCGTGGATTCCACTGGTCCAGAAGCAGTGTCACCCCGACACGAGGAAGTTTCTTTGCTCTCTCTTTGCACCGGTGTGTCTGCACGATTTGGACGAGCCTATCCAGCCGTGCAGGTCGTTGTGCGTGAGCGTCAAACACGGTTGCGCACCGGTGATGTCCGCGTTCGGGTTCCCGTGGCCAGATATGCTTGACTGCGAGCGCTTCCCCCAAGACAATGACCTGTGTATCCCTCCAGCGGGCATCGATTATTCCATGCCAGTCACCAGAGAAGTGCCCAGAGTGTGTGACGCCTGCAAGGAAAAGGAGGAAAATGACAATGAAATAGTTGACAACCTGTGCAAAAACGACTTCGCCCTGAAGATCAAGGTAAAGGAGATCTCCTACATGAACGGCGACACCAAGATCGTGCCCGAGACCAAGAGCAAGACCATCTACAAGCTGAGCGGTGTGACGGAACGAGACCTGCGCAAGACGGTGCTCTGGCTCAAGGATGGCCTGCAGTGTGTGTGCGACGAGATGAACGACATCAACGCCTCCTACCTGGTCATGGGCCAGAAGATGGATGGCCACCTGGTCATCACCTCGCTCAAGCGCTGGCAGCGGGGCCAGCGTGAGTTCAAGAGGATCTCACGCAGCATCCGCAAGCTGCAGTGCTGAGCGAAGCCAGACTCAAGACCCGATGAGTCTTATCTAAACTCTAAGAGCCGGATCTGGTCCGATCCGAATGCAACTAGTTCTCAGTCAGTATTGTTAAACGTCCTGTCCTTAGTACCGTGTGTTTAGCGCTGCCATAGGCTACTTTTCAACACGTTTATTGTTTATTAGGATTTCATTTGATCCATCAATAGTCCTTATAAGATAACACAAATCACATACACATTACATTAAAATCAAAGACAAACAGGTGAATATTGCAGGTCTACTACATACTGCCTGTAATGTTGTATGCATATTTCAGTGTTTCTGAAAatattaaaaatcattattttcattttttcattATGCAATGCAGTCTGTTAGGCTACACTTATCCAGACTTGATGATGAGGCTGGATACATTTAGTGCATTGGCCTATCATTaggtgagagggagagtgtgtggttTCTGTGTGCATGGTGTGATATAGTTTCAGATGTATTCTTTAAGATTATGGTATGTAAAGAAATACAATGTAATGTGCTTTTTTACTTATTATTTTTCTCAAGCAATGAGAGATAGCTGGCTATATTCTCTGCCTTTTAGATAGTACTTCCAATAATGTACCCCTGGCATTGCAAGTTCAGCAGCCCAAAGCAAGGCCCATATCATTGCAGTGACGACAATCAATTATTTGACCCTCTGCAGTCAATGGACTATGTCACCTTTTTGTACATGAGCCTCAATACTGCACTGTTTATTTTTCTACCACAATTATTGATTATGAAATCTTTTTCAGTTTCAAGCTTTTTCAAGTAAATTCCTTTGACATTGGTGATCAAATTGTGGAGTGCCCGTCTACCATGTCATTTCTGTTTCTCTCAACTTTTTTTAATGACATTTCTTCTCACTATGGCAGCGTGTCTTAGGTATGTTAACTAAGTATATCAGGATTGTATATTAATGGTCGATTGTGTTTTCATTTTTAGGGGTGAatgcaaacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaagtaaaatATTGATTTATATAGTACTCTGTAAATATCAGAAACCTTGTATTCTTGTACATAGTTTCGGGAGACCGCAGGAGTTGACACGTGTGTTTTCAGAtggtgatatatattttttttgtaaattacaACACTAAACATATGTTTGTATAATGTTAATCTGAGAAGTGTAATTCTTATAAATGATATGCATCTTTTGGTCCCTCTTAATTAAAGGAAACAATTCAAGGAACC

Function

NR:

description
secreted frizzled-related protein 2-like

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005576 extracellular region cellular_component

KEGG:

id description
K02176 SFRP2; secreted frizzled-related protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021573647.2 True 2364 mRNA 0.43 3 21993043 21996218

Neighbor

gene id symbol gene type direction distance location
LOC110497513 cisd2 coding upstream 195106 21793044 ~ 21797937 (+)
LOC110497517 ctnna2 coding upstream 661099 20668895 ~ 21333923 (+)
LOC110498561 LOC103369849 coding upstream 1589643 20400331 ~ 20403400 (+)
LOC110498677 LOC106609979 coding upstream 1630263 20335232 ~ 20362780 (+)
LOC110498678 LOC106609977 coding upstream 1799536 20079713 ~ 20193507 (+)
LOC110497507 NA coding downstream 95273 22091491 ~ 22095427 (+)
LOC110497505 dnja1 coding downstream 196108 22192326 ~ 22215865 (+)
LOC110497504 LOC106602713 coding downstream 233198 22229416 ~ 22265522 (+)
LOC110497503 LOC106609996 coding downstream 293024 22289242 ~ 22326408 (+)
LOC110497502 LOC106609999 coding downstream 369574 22365792 ~ 22381737 (+)
G1601959 NA non-coding upstream 51812 21940991 ~ 21941231 (+)
G1601957 NA non-coding upstream 56845 21935993 ~ 21936198 (+)
G1601956 tacr3 non-coding upstream 58621 21933958 ~ 21934422 (+)
G1601954 NA non-coding upstream 60518 21932317 ~ 21932525 (+)
G1601947 NA non-coding upstream 69754 21923081 ~ 21923289 (+)
G1601946 NA non-coding downstream 8329 22004547 ~ 22005049 (+)
G1602037 yo84 non-coding downstream 69719 22065937 ~ 22068096 (+)
G1602108 NA non-coding downstream 171413 22167631 ~ 22170667 (+)
G1602082 NA non-coding downstream 220897 22217115 ~ 22217868 (+)
G1602078 NA non-coding downstream 225433 22221651 ~ 22225312 (+)
G1601872 LOC106610027 other upstream 189153 21803193 ~ 21803890 (+)
G1601848 LOC106610028 other upstream 216291 21763166 ~ 21784919 (+)
G1600522 NA other upstream 1350527 20642082 ~ 20642516 (+)
G1600174 adra1b other upstream 1572388 20418646 ~ 20420655 (+)
G1600167 NA other upstream 1581732 20411033 ~ 20411311 (+)
G1602007 LOC106610024 other downstream 22849 22019067 ~ 22020999 (+)
G1602216 NA other downstream 420984 22417202 ~ 22417549 (+)
LOC110497498 LOC106610000 other downstream 452599 22423424 ~ 22462109 (+)
G1605451 sptlc2 other downstream 2854957 24851175 ~ 24853937 (+)
G1606716 NA other downstream 3828266 25824484 ~ 25824826 (+)

Expression


Co-expression Network