LOC110498676


Basic Information

Item Value
gene id LOC110498676
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 21999248 ~ 22001354 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110498676
ATGGGGGGGTTTTGGGCAGTAAAATACAAAGATATTCCTCAATTCTATAATTTCCCTCCCATATTTTGTCTGGTACGTATTCTACAAGTGCTGCGAAAATTATCGGTGATCAATAGTATAGTTTACACCACTCCTTGTGTAACCTCTGAGGATGTTTCCAGACTGGAGTATGGACATTAGTGTAAACCTATTCAATGATCAGACAATGCAAGAGATGCTGTGCTATGGCAAGGGTGTACTTTGGGGGCTTAGGACCCTGAACATCAGCAGACACAATCTGCAATCTTTCAACAATCACCTTTTCAGGAAACTGGACAAGTTGACCACCATCGACTTGAGTTGGAATGTTTTCCATAGCATACTTGACAGCTGCGTCTGGCCTCCAAGTCTCAGCTTGAACCTCTCGTCCTCCCACTTAACAATGGCAACCCTTTGCCTTCCAAAGAGTTTGCACGTTCTTGATTTAAGCAACAATGACCTGACGCTGTTAAACATTGAACTTCCTCTCCTTACTGAGTTGTACTTCTCTGGCAACAAGATCTTGAGTTTGATGGATGGAAAGTTGTACCTTTGTCTGGAGGTTTTCTCCATTCGCAACTATGCCCTTTGCTCCTTTAGCTGTGATGACTTGGAGGGATACAACAAACTAAGGGTTCTGGAGGCTGGTACCAACACATTCGTATGTTCGTGTGACTTTGTGGCTTTCATCTACCCACCTTAGTAGATGGATCTGGGGCCTATGAATGCGAGTCACCTGACGCGGTGAGAGGGATGCCCATCGTAAACGCTCTGTTATTAGTGTTTGAGTACCACGCAACATTATTCCTGTCCCTTCTTTGCACTAGCATTCTCATGGTCTTTCCTGTGTCTGGATGTCTGTGTTACAATTGCGATGCCCTGTGGTACCTAAAAATGACCTGGGTATGGCTGAGAGCTAAAAGGAGGCCAGTTCTCAAGAGAGGCGACTGTCGGCTACGATGCCTTTGTAACCTATAGTGAGAGAGATCTGGGTGGGAGGAGGAGCATCTGGTCCCAGAGCTTGAGCAAGTGCAACAGCCATTACGGATCTACCTCCACAAGAGGGACTTCCTGCCCGGTAGGTGGATCTTGGACAACATCATGGACACCATAGAGAAGAGCCACGGGACACTCTTTGTCCTCTCCCAGAACTTTGTGTGAGTACGAGCTGGACTATTCCCACTTCAGACTGTTAGATTTAAAAACGACAGGTTGAAACTGCTGGAGCCCATTGCCAAGGAAACCGTCCCCAAAAGGCTCTGTAAGCTGTGAAAGGACATGAACTCTAGGAGCTACCTGGAATGGCCAGAATATGACAACCAGTGAACTGAGTTTTGGCAAAGTCTAAAAGTGTCAATACAAAGACCTGAGCAGAAAGCTTGA

Function

NR:

description
toll-like receptor 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110498676 True 1401 mRNA 0.46 2 21999248 22001354

Neighbor

gene id symbol gene type direction distance location
LOC110497511 tacr3 coding downstream 64602 21894972 ~ 21934646 (-)
LOC110497512 LOC106610027 coding downstream 178442 21799255 ~ 21820806 (-)
LOC110497514 LOC106610028 coding downstream 208686 21763166 ~ 21790562 (-)
LOC110497516 LOC106609982 coding downstream 870724 21124027 ~ 21128524 (-)
adra1b adra1b coding downstream 1558324 20420056 ~ 20440924 (-)
LOC110497508 LOC106610024 coding upstream 6969 22008323 ~ 22121011 (-)
LOC110497506 mnd1 coding upstream 122070 22122397 ~ 22169711 (-)
LOC110498675 LOC106610021 coding upstream 154526 22155880 ~ 22186787 (-)
LOC100135859 LOC106602804 coding upstream 220494 22221848 ~ 22225274 (-)
LOC110497500 LOC106609998 coding upstream 329723 22331077 ~ 22358393 (-)
G1602504 NA non-coding downstream 67264 21931783 ~ 21931984 (-)
G1602497 NA non-coding downstream 74525 21924429 ~ 21924723 (-)
G1602490 NA non-coding downstream 84572 21914457 ~ 21914676 (-)
G1602481 NA non-coding downstream 105885 21892040 ~ 21893363 (-)
G1602556 NA non-coding upstream 3200 22004554 ~ 22005007 (-)
G1602559 NA non-coding upstream 5939 22007293 ~ 22007646 (-)
G1602655 NA non-coding upstream 190572 22191926 ~ 22192138 (-)
G1602626 NA non-coding upstream 209198 22210552 ~ 22215865 (-)
G1600030 NA other downstream 1862687 20127211 ~ 20136561 (-)
G1600014 LOC106609977 other downstream 1890457 20107915 ~ 20108791 (-)
G1599758 LOC106609957 other downstream 2357245 19638760 ~ 19642003 (-)
G1599760 LOC106609957 other downstream 2362221 19636018 ~ 19637027 (-)
G1599717 NA other downstream 2441891 19555597 ~ 19557357 (-)
G1602753 NA other upstream 402162 22403516 ~ 22403837 (-)
G1602763 NA other upstream 414064 22415418 ~ 22416043 (-)
LOC110497482 LOC106610017 other upstream 1140462 23121508 ~ 23168994 (-)
G1604902 NA other upstream 1972436 23973790 ~ 23974106 (-)
gpr137c LOC106602981 other upstream 2189344 24176332 ~ 24206622 (-)

Expression


Co-expression Network