LOC110497499 (LOC106610000)


Basic Information

Item Value
gene id LOC110497499
gene name LOC106610000
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 22394506 ~ 22401330 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021573631.2
atattttgtattttatgtaACCATACCTACGGtaacatatcacatttacatttactatgttacgtctagtctatgagaccagtctgCCTACACAGCTAGTCTATACTTCCATCGCCTGTCATTTGACTGTCAAATATTTTTATGTTCACCTGTTGCAATACCCCGGTATGGAGCTCATCATGTTCAGAGGGTTGGCTGTAGGTGGAGTTACGGTCAAATATTTGGTGGTCCTGTTCCTCTTCGAATTGGCTTCTATCTTCTCAAAGAACCGAGGGGTTGAATGAGAATGGTATACACTAGGCTATGTGTCAGGCGTTTTACACAGAACAGAAGAAAGTGTAACCCAGTTTGGATTATTTATTCCTTTTTGGATGAATGCGGAGACGCGGTGCGCCCTCGTTGAATGGGAGGGAGGCTGCCTTTACGCACCAAATGAAGTCATGAACGGCAGAACGATGAAGTCATCGCCTGCACTTGCAGCTATAATCTCTGTGCACTGATCGATCGatgtacacacacagatgagGGGTTCTCACCGTTTTGGGAAGTGGGTCATGGAATAATCGGTTCACCTATTTTCTTTGAAAGGCCATATGTGAAAGCTTGGGTTTGAGAGTTAATTTGTCTGTTCAATTGGTATGCTACTGTCGCCTgataaaaacgtttgacatgttgaGATTCGTTTTTGGACACAGATAGTGACAACATTTATTGTAAgaataggctatagcctacattTCCATTTTGCGTGATGCAGATCAAATGTGTGCTGTCAGGTTTGTGTGGTAACCTACAGTTTTCAATAGACCTAAATCAAGATTGAAACATCAGAAAGATGTGCTCGTTTTGGAAATATATCAAAGTACGGAATAAAACATACTGTAAAACATGTTGCTCTGAGAAATTGGACGTTGTTGTCATTCATGGTGTAGCGGAGAACGAAGCAATTTGAGACATGGATAAATTTCTGCAGATCGCGCCTCACTCCCTGGGCATAGTGCTGTCTCGGGTTGGCGCCGAGGAGTCGCCCGCGGTAACTGACAAGCTCCAGCAACATCACACGGGCTACGAGATATTTGCCGATTTCAAAGCCGTCAACATGCAGCACTTCTGGAATAAGAAAGTGACCGATGCGATATCGGAGACTTTCTTCCTAGGCTGGAttgaccaggatgtcctgctaaTCCAAGGGAAGGAACACCACCTCGAGGGGCTCAGAGATGGATGGACGAGGCGGGCCCTCAAACCGCCCGGAGGGTTCGAGATCAAGTGCATCGGCTTCTAACAGAGGGGCTACGAGAAGTGTCCCATGCAGGAAGGAAAGTCGAGTGTCTGTTCAGGAAAGGAACCATGCTAAACACTGAAGCACTCTCCCCgatggaaggaagaggaggggccTGGAAGAGAGAATTGGGGGAAACGATAGACATCACAGAAATTATTCTGGCAGTATATCCCAAGTGGTAACAGGAATGACTCTGGCTGTATTTCCAAAAGGGTGACAGGAATTAGTCTGACAGATTTTCCCAAGAGGTGGGTTGGAGCCCCACTGATGCGTTGAGAGGAATTCCTCTCTAGGGTTGCAACTTAAGACTGGGTACCGTCCAGAAACATgcttaattatttttattttttatttcacctttatttagccaggtaggctagttgagaacaagttctcatttacaactgcgacctggccaagataaagcaaagcagttcgacacata
>TU1834302
ACTGACAAGCTCCAGCAACATCACACGGGCTACGAGATATTTGCCGATTTCAAAGCCGTCAACATGCAGCACTTCTGGAATAAGAAAGTGACCGATGCGATATCGGAGACTTTCTTCCTAGGCTGGAttgaccaggatgtcctgctaaTCCAAGGGAAGGAACACCACCTCGAGGGGCTCAGAGATGGATGGACGAGGCGGGCCCTCAAACCGCCCGGAGGGTTCGAGATCAAGTGCATCGGCTTCTAACAGAGGGGCTACGAGAAGTGTCCCATGCAGGAAGGAAAGTCGAGTGTCTGTTCAGGAAAGGAACCATGCTAAACACTGAAGCACTCTCCCCgatggaaggaagaggaggggccTGGAAGAGAGAATTGGGGGAAACGATAGACATCACAGAAATTATTCTGGCAGTATATCCCAAGTGGTAACAGGAATGACTCTGGCTGTATTTCCAAAAGGGTGACAGGAATTAGTCTGACAGATTTTCCCAAGAGGTGGGTTGGAGCCCCACTGATGCGTTGAGAGGAATTCCTCTCTAGGGTTGCAACTTAAGACTGGGTACCGTCCAGAAACATgcttaattatttttattttttatttcacctttatttagccaggtaggctagttgagaacaagttctcatttacaactgcgacctggccaagataaagcaaagcagttcgacacatacaacacagagttacacatgggataaacaaacatacagtcaataatacagtagaaaaagcctatatacagtgtgcaaatgaggtaggataagggacgtaaaggcaataaataggccatggtgacgaagtaattacaatatagcaattaaacactggaatggtagatgtgcagaagatgaatgtgcaagtagagatactggggtgcaaaggtgcaagataaataaatacatacagtatggggatgaggaagttggatggtgtcacgccctggccatagagaggctttttattctctattttggttaggccaggttgtgactagggtgggagttctatgttcttttttctatgtttttgtatttctttgtttttggccgggtatggatctcaatcagggacagctgtctgtcgttgtctctgattgagaaccatacttaggcagcctgttttcccactatgggttgtgggtagttgttttctgtttttgtgtctgcaccagacagaactgtttcggtc

Function

NR:

description
storkhead-box protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021573631.2 False 1730 mRNA 0.45 2 22394506 22400815
TU1834302 True 1209 lncRNA 0.45 2 22395542 22401330

Neighbor

gene id symbol gene type direction distance location
LOC110497502 LOC106609999 coding upstream 12769 22365792 ~ 22381737 (+)
LOC110497503 LOC106609996 coding upstream 68098 22289242 ~ 22326408 (+)
LOC110497504 LOC106602713 coding upstream 128984 22229416 ~ 22265522 (+)
LOC110497505 dnja1 coding upstream 178641 22192326 ~ 22215865 (+)
LOC110497507 NA coding upstream 299079 22091491 ~ 22095427 (+)
LOC110497498 LOC106610000 coding downstream 22609 22423424 ~ 22462109 (+)
LOC110497497 primpol coding downstream 97164 22497979 ~ 22509266 (+)
LOC110497494 LOC106610031 coding downstream 212325 22613140 ~ 22615169 (+)
LOC110497493 LOC100194655 coding downstream 283015 22683830 ~ 22686430 (+)
trnar-ucu-8 NA coding downstream 303889 22704704 ~ 22704795 (+)
G1602156 NA non-coding upstream 92072 22301929 ~ 22302434 (+)
G1602151 NA non-coding upstream 105559 22288224 ~ 22288947 (+)
G1602149 NA non-coding upstream 111629 22282657 ~ 22282877 (+)
G1602148 NA non-coding upstream 111854 22282395 ~ 22282652 (+)
G1602146 NA non-coding upstream 114855 22279452 ~ 22279651 (+)
G1602204 NA non-coding downstream 2792 22403607 ~ 22403827 (+)
G1602208 NA non-coding downstream 6675 22407490 ~ 22407695 (+)
G1602222 NA non-coding downstream 29065 22429880 ~ 22432143 (+)
G1602233 NA non-coding downstream 48700 22449515 ~ 22449924 (+)
G1602249 NA non-coding downstream 76165 22476980 ~ 22484872 (+)
G1602007 LOC106610024 other upstream 373507 22019067 ~ 22020999 (+)
G1601872 LOC106610027 other upstream 590616 21803193 ~ 21803890 (+)
G1601848 LOC106610028 other upstream 617754 21763166 ~ 21784919 (+)
G1600522 NA other upstream 1751990 20642082 ~ 20642516 (+)
G1600174 adra1b other upstream 1973851 20418646 ~ 20420655 (+)
G1602216 NA other downstream 16387 22417202 ~ 22417549 (+)
G1605451 sptlc2 other downstream 2450360 24851175 ~ 24853937 (+)
G1606716 NA other downstream 3423669 25824484 ~ 25824826 (+)
LOC118941466 NA other downstream 3572530 25973345 ~ 26002713 (+)

Expression


Co-expression Network