LOC110497494 (LOC106610031)


Basic Information

Item Value
gene id LOC110497494
gene name LOC106610031
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 22613140 ~ 22615169 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021573623.2
TTTATAAGGGGCAGCTTCTCAGCTCACCTCTCAGTCTACCTAGTCTACAAGCTAAGGAACACACATCCAAACTGCCTCTTGGCATTAATATTTTGAATTAGAACTTTATCAGCACATTGCCAAAGGATGGCATCCAAGATGAAGGATCGCAAGAGAACTCCCATCTCCCATAAAGTGATAGAAAAAAGAAGACGGGACCGCATCAACCGCTGTCTAAACGAACTGGGGAAAACTGTGCCAATGGCGCGCGCGAAACAGAACTCTGGAAAACTGGAGAAGGCCGAGATTCTGGAGATGACAGTTCAGTATCTACGAGCGCTCCACTCCGCAGACTTCCCCAGGGGCAGAGAAAAAGGTGAGCTACTGGGGGAGTTCGCCAACTACTTCCACTACGGCTACCACGAGTGCATGAAGAACCTGGTACACTACCTGACCACGGAGGAGAGGGTTGAGACCAAAGACATCAAGTACGCAAGGATCCTGGCCTTTCTTCAGTCCAAGTCCCGAGTCGTCAACGAGCCGGTGTTCGGCTCCCTGGGCGCGTTGCCAGACCAGGCAGATTATCTGTGCCAGTTTCACTCCTCCCCGGAGTCACACCAGAGCCACAGCCCCAGCGACTCCGTGTTACAGCAGAGCCCACCGGGACACTTCTCTTGGCACAGCACTGCACGCAGTCCAACCATGTCGTACCCAACTGTGCCGCTTTCCGCGCCGATGCAACAGCATCACGGTGGCTACTTGTCACCAGTGCAAGGACTTGACCATCACTACTTCAACTTCTTCAACGGCCACCCGCACGCGAATGCGTTCAGTTTGCACAGTACGCAACACGCGTTGTAAATAGAATCCGGCAACCATTTTGTGTTGTCTTTATTTATATATGTGTTCATAATAATATACTTAAAGATTGTGGATAttgtatactgtacaatacatattttttaaaaaataaaagtaaatgTTTATTTCCCACA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021573623.2 True 974 mRNA 0.49 4 22613140 22615169

Neighbor

gene id symbol gene type direction distance location
LOC110497497 primpol coding upstream 103874 22497979 ~ 22509266 (+)
LOC110497498 LOC106610000 coding upstream 151031 22423424 ~ 22462109 (+)
LOC110497499 LOC106610000 coding upstream 212325 22394506 ~ 22401330 (+)
LOC110497502 LOC106609999 coding upstream 231403 22365792 ~ 22381737 (+)
LOC110497503 LOC106609996 coding upstream 286732 22289242 ~ 22326408 (+)
LOC110497493 LOC100194655 coding downstream 68661 22683830 ~ 22686430 (+)
trnar-ucu-8 NA coding downstream 89535 22704704 ~ 22704795 (+)
LOC110497490 LOC106610008 coding downstream 143364 22758533 ~ 22773112 (+)
LOC110497489 LOC106610009 coding downstream 164276 22779445 ~ 22830551 (+)
LOC110497488 LOC106602733 coding downstream 223844 22839013 ~ 22841272 (+)
G1602306 NA non-coding upstream 33507 22579392 ~ 22579633 (+)
G1602297 NA non-coding upstream 47073 22563093 ~ 22566067 (+)
G1602277 NA non-coding upstream 86297 22524095 ~ 22526843 (+)
G1602275 NA non-coding upstream 89283 22521999 ~ 22523857 (+)
G1602264 NA non-coding upstream 100969 22504997 ~ 22512171 (+)
G1602934 NA non-coding downstream 159594 22774763 ~ 22787472 (+)
G1603079 LOC106602736 non-coding downstream 324941 22940110 ~ 22944324 (+)
G1603125 NA non-coding downstream 394962 23010131 ~ 23010757 (+)
G1603360 NA non-coding downstream 409596 23024765 ~ 23024980 (+)
G1603385 NA non-coding downstream 446279 23061448 ~ 23066827 (+)
G1602216 NA other upstream 195591 22417202 ~ 22417549 (+)
G1602007 LOC106610024 other upstream 592141 22019067 ~ 22020999 (+)
G1601872 LOC106610027 other upstream 809250 21803193 ~ 21803890 (+)
G1601848 LOC106610028 other upstream 836388 21763166 ~ 21784919 (+)
G1605451 sptlc2 other downstream 2236006 24851175 ~ 24853937 (+)
G1606716 NA other downstream 3209315 25824484 ~ 25824826 (+)
LOC118941466 NA other downstream 3358176 25973345 ~ 26002713 (+)
LOC110497557 gcfc2 other downstream 3649120 26261361 ~ 26279307 (+)
G1607702 NA other downstream 4904794 27519963 ~ 27522078 (+)

Expression


Co-expression Network