trnar-ucu-8


Basic Information

Item Value
gene id trnar-ucu-8
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 22704704 ~ 22704795 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>trnar-ucu-8
GGCTCTGTGGCGCAATGGATAGCGCATTGGACTTCTAATTCAAAGgttgtgggttcgagtcccacCAGAGTCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnar-ucu-8 True 73 mRNA 0.58 2 22704704 22704795

Neighbor

gene id symbol gene type direction distance location
LOC110497493 LOC100194655 coding upstream 18274 22683830 ~ 22686430 (+)
LOC110497494 LOC106610031 coding upstream 89535 22613140 ~ 22615169 (+)
LOC110497497 primpol coding upstream 195438 22497979 ~ 22509266 (+)
LOC110497498 LOC106610000 coding upstream 242595 22423424 ~ 22462109 (+)
LOC110497499 LOC106610000 coding upstream 303889 22394506 ~ 22401330 (+)
LOC110497490 LOC106610008 coding downstream 53738 22758533 ~ 22773112 (+)
LOC110497489 LOC106610009 coding downstream 74650 22779445 ~ 22830551 (+)
LOC110497488 LOC106602733 coding downstream 134218 22839013 ~ 22841272 (+)
LOC110497483 LOC106610016 coding downstream 399354 23104149 ~ 23116038 (+)
LOC110497481 LOC106610019 coding downstream 469721 23174516 ~ 23221212 (+)
G1602306 NA non-coding upstream 125071 22579392 ~ 22579633 (+)
G1602297 NA non-coding upstream 138637 22563093 ~ 22566067 (+)
G1602277 NA non-coding upstream 177861 22524095 ~ 22526843 (+)
G1602275 NA non-coding upstream 180847 22521999 ~ 22523857 (+)
G1602264 NA non-coding upstream 192533 22504997 ~ 22512171 (+)
G1602934 NA non-coding downstream 69968 22774763 ~ 22787472 (+)
G1603079 LOC106602736 non-coding downstream 235315 22940110 ~ 22944324 (+)
G1603125 NA non-coding downstream 305336 23010131 ~ 23010757 (+)
G1603360 NA non-coding downstream 319970 23024765 ~ 23024980 (+)
G1603385 NA non-coding downstream 356653 23061448 ~ 23066827 (+)
G1602216 NA other upstream 287155 22417202 ~ 22417549 (+)
G1602007 LOC106610024 other upstream 683705 22019067 ~ 22020999 (+)
G1601872 LOC106610027 other upstream 900814 21803193 ~ 21803890 (+)
G1601848 LOC106610028 other upstream 927952 21763166 ~ 21784919 (+)
G1605451 sptlc2 other downstream 2146380 24851175 ~ 24853937 (+)
G1606716 NA other downstream 3119689 25824484 ~ 25824826 (+)
LOC118941466 NA other downstream 3268550 25973345 ~ 26002713 (+)
LOC110497557 gcfc2 other downstream 3559494 26261361 ~ 26279307 (+)
G1607702 NA other downstream 4815168 27519963 ~ 27522078 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) trnar-ucu_13 NA coding NC_053122.1 CM020919.1 19516853 ~ 19516945 (+)
striped catfish (Pangasianodon hypophthalmus) trnar-ucu_18 NA coding NC_047620.1 CM018566.1 13328052 ~ 13328143 (-)
tiger barb (Puntius tetrazona) trnar-ucu_73 NA coding NW_025048114.1 JAEQBD010000459.1 1411479 ~ 1411568 (+)
tiger barb (Puntius tetrazona) trnaa-agc_7 NA coding NC_056702.1 CM032071.1 26097181 ~ 26097253 (-)
mexican tetra (Astyanax mexicanus) trnar-ucu_18 NA coding NW_019172695.1 APWO02002293.1 4274 ~ 4363 (-)
mexican tetra (Astyanax mexicanus) trnar-ucu_43 NA coding NW_019172899.1 APWO02000093.1 35722 ~ 35813 (+)