LOC110497484 (LOC106602736)


Basic Information

Item Value
gene id LOC110497484
gene name LOC106602736
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 22937062 ~ 22949114 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021573613.2
ATGCATGCTCATGACCCTATCTGTGTCTGTAACATACAAGCCATGGAGTCAGAAACAGAGGATCAGGAGATCATTGTCATGGGAGCTTGGTCAGTCTCTGAGTACTGCCACTCCTCTGAAGACGTTTACATCTCAGAGTCCCGGGATGGATCCTACAATGAAGAAAGGAAGAGTGATACAGAGCTCCCCAGCCCTGAACCTTACACCAAGAAAGCCATGGTGGAACATCAGAAACCACCCTCCAACTACAGCCCGGAAGAATGTAGTCCGGTCAGGGGGGGACGGCAGGAGGCTGGGCTCTGGGACCGGGGCCAGGGGGAATGGGATGGGCAACCCAGGGGGGACGGCAGGAGGCTGGGCTCTGGGACCGGGGCCAGGGGGAATGGGAGTGTTGAGTCTCCGGAAGAAGGAGGGCACAGCGAAACACCTCCTGCTTATCTATCCTTTGGAATTTCAGCGCAGGGTGCTGAGCAGGCAGAGGAGTGGGACTCTGCGTCTGAGAGAGATCTCCCCAGTCCCAGCAGACACAGGGTGAGGCACGCACGGCCCAGACAGAGCAAGAGCCAGTCAGACAAGCAGGTGAATGAAGCCAATTCTAAATGTAAAAGCATTGCTTTGCTGTTGACCGATGCACCAAATCCCAGAAACAGAGGGGTGTTGATGTTCAAGAAGCAGCGGCAAAGGGTTAAGAATTATACACTTGTCAGCTACAGGACAGGTCAGCACCAGTTTGACGACAAAAACGGCGAAGACATAGAAAGTGAAGACGGCAAAACGGTCAGGTTTACTTTGACCACTAAAGATTATTCAGAACTTGAAGAAGACTACTCAATGACTGTACAAGAACGAGACGTCAATTTAAACTAGGAGAACCTTGGAATAGCCAACATATTTCAGCACCTGGAAGAGATGGAGCGACTGCCAGAGACAAGAGGCAAGGGCGTGGCAATGTTTGCGCAGCGCCGCCAGAGGATGGATGAGATTGCCTTAGAGCACGAGGAAATGAGGTGCAAAGGCTTACCAGGCGAAGGTATTGTAGAGCTTGAAGACACAGAACTGCACAAGTCTTACAAAATGGATGAAACTTACGTGCAATCCAATCATGCTCATGGCAATCAACAACTGCAGTGCAAAGAAAACCAACAGGAGGTGCAACAATGTACTCACATGATGAACAGAATGCCCAACCACCTATCTAGTGCCATACCAAAGCCTCTTGTGCCCAACAGAACAGCGAAGCCCTTCCTGGGATCCCAAAACAGAGTGCCTATCCCATTCTCTCCTCTTAGTGGTGTCACTAGTCCAGTGAAGCATCATGAACTCAAATTCAAGGTATCAGTCCCTACACACACAGTTCCACAGGTCTGGTCCCCAACTGGGGACTTCATAGCGTCGCGTGATGAACGCATATCTGTACCAGCAATCAAGACTGGCATCCTACTAGACTCAAAAAGAAGAGGTGCTAATAGAGCATCCTCTGATCAAGCATCCAATGCCTATATTCAAAACAGAGGGGAAAGAAGATCATACATTGAGTCAGGAGAAGAGGAAGACTACTTTAGTCTTGGTGCTGAGGCATGCAACTTTATGCAACCCCGAAAAGTCAAGCACAAGTATCCCCCACCTGTTGCACCAAAGCCTAGCATCAACCCAGCCTGTCCACCATGGCTGAAGGAGAGTTCTTCAAATGTGCTACTTCACCCGGGTCCAATCCCAGCATCTTTCCCAAGTCCAGTGGGGGCTCCTCCTCAGCAATACTTCAAACAACAAGACTGGCTTTTGCCTCAGCAAATGGTGAACCCCCGTGAACCACCCCAAACTCAGGCACGACCGCAGCCACCAATGAGCACCGGGGCACCAGCCAACTCAACATCACCCTCTCAACTTCAGCCAACCATGAATAGCTGGAGTCCACAACCATCGCGGTCCCCAGTGAGGTTTCAGGCCCCAAACCCAAATCACACGGCACCTCGCCAACTCACAGTCTCAAAGAATAAGTCCCCAAATCCTTCGGTGGAATCTTGCCCACCTCAACAAGAGATCACTTACAGCCACGCAGCCAAGGCACCGTCTACATCTCCAATGGGTCACATCTCTGAGGGCCATGTTAGTCCAGCCATAAATGGTCCAACTCTGAGGGGAAGAGGTGCCGAACTCTTTGCCACGAGGAAGACCCGTATGGAGAAATATGTGGTGGACGCCGAAACAGTTCAGGCCAACAAAGCAAAGTCTCCTTCCCCCACCACCTCCCTTCCAGGTGCTTGGAGATACTCATCGAACGTTCGAGCCCCATCTCCTTTGTCATACAATCCCCGTCATGCTCCTTGCTATCCCCCTGCAGGAGCTAAGCAGCCACCTTCAACAAGTCCAAAAATCAAGCCAAAGACCAAGGCGAAAACAAAACCACCACCCCACAAGCACATGGATGCCCTAGACGTCTTGAAACATCAGCCTTACCAGCTGGACTCTTCACTCTTTAGATATAACGTAGGCACTGAGGCTGAAGGCCTTAGCCCTAGCCTCAAAATGGCTCCCATCCCAACCCCTGAGTCAAACCCACCATTGAGCCCTAAACCTGCCCCTGTTGTCAGCCCTAGACCTGCCTTTGGCATTTCTCTTTACCCTGCCCATGATCTTCCCCCAGCAAACCAACCATGCAAGCCCATAGCTCCTGCTAAGTCTACTAGATCGGGTCTTTGCAGAAGctactctctgtccctacccAGACAGTCATCTATGTCCCCTGTGAAAACCCCTGTGTTCCATCCATCTCTCGGGAGACAGACCTCCTGGCAGGAAAAAGTCACCCTCAAGCCCCCCAGCCCTTGGGAAGCTGCCTCCCGGAGCCCCCTGGGTCTGTTGGACGATGCCTTCCAATTACAGAACTTCCCTCAGTCCATCTCCACTAACGTCAACTCCGCCGCCAACCAACAATCTCTTCCGGAACCTCCGGACGAACGGAAGCGCAAGGTGTCATTGGACGCCCCCAGTGTCAGTGTTGGTTACTATCACTCGCCACCCCCAGCAATGCATACTAGGTCTATGAGTTTGACCTCTGCCCCTGTTTACGGGCCTCCCTTCAGACAGGCCCAGCCTCTGTGGTCATGGGTGAGTGCTACCGTTGGACATATGGGTCGAGGCCCAGGCCACCCGTGTCAGTCCCGCCACGCTACCTTGCCATGCACAACTATGAGAAGGTAATCTCGCACAGCTATTTGTACATCCTCAGCTAGAtgacataaacaaaaaaacactgcACTGCAAAAAAAACACTGTAAGAACAAATGTAGAAAATGTAATTGGATGTACATATGTAATCAATAGGGTCAGCATATTATAATTAACAATTGAATCAATGTAGTGTTTCCTTTTTTTAAGAGGGGTATAGTGTCATGCACGCAAAAACAGTGTTAATGTAGTTGTTGCAATATTGCAAACGGACGTGGCAGTTTCACCACTGTGGATTCTAGCTTTAAAGGTTTTCATTTCTGGAAAAAAAGACGAGGAGACAAGGAGAAAGACGATTAAGGAGTTGGGCAAACCAAATTATGATCTCCCTATCTAGCTTGTTGGGGGGCAAATAGGGGGCAAATAATTAGTATCTCATTCTCTACTATAATTCTGATCAGTGAAGTGCATTCACACACATTTATAATATGTTCTAATGTATGTTACATTGGATGTTCTGTACCAGAAAAGTTGAAATTCAAAACAAGTTTTATGAATTTGTATAAATGGATACATGATAGGCCTATTAtttatttgcatgtgttttacaTTGATTTACCTCTAAACGTAAGAAGTGTGCAAGGTGATGAGTGAGAAAATTACAGATGGCCGGGAAATGAAAGTTAGATGTGTTGAACCTATAActtacatgttttattttccaCATAGTATGAAAACTAAATTGAAAAATGTATTGAGTACTGTAACAGTATGTGATGTAAACGGTAACATCTAAAATACAAATACAGTGAATTGCTAGGGTTCCTTGATGGTTTGTGTAATATGCACAACAGCATGTGTAGCAGGTTAGATAGCAAGTACCAAGTGCACATGCTGATGAAAACAATCAATATTCATGTTCACGTTCAGACAATCCCTTATGTTACTATGACAATTAAGGAAACTTAGAAATGTcttaaaataataattaaaatgtcTGATTTTATTGCTGAAATATATAAAATgaacagtgttttttttaaatataattcaGTCAGTTTGCAAAACATAGTCACACACCATATTCAAGACCACGCCATTGAAGAGGTTGAAGTTTCTGTGATTGGTTTGGCACTTCTGTGAAAGGCATGTGAAATGTGTTACACTTTCATATGGACTGTGAATGTGTTGAAGATATTGTAACTTTTATCACTTGATTGTGTTGTTAATTTGTTGCAGCACTGAAGATAAATATTGCACTCTTCCAATAAAACGTTCACGTTGTCGAGTA

Function

NR:

description
synaptopodin-2-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021573613.2 True 4459 mRNA 0.47 6 22937062 22949114

Neighbor

gene id symbol gene type direction distance location
LOC110497486 myoz2 coding downstream 14787 22910464 ~ 22922275 (-)
LOC110497487 LOC106610012 coding downstream 29842 22849715 ~ 22907220 (-)
LOC118941547 LOC106610007 coding downstream 215721 22706176 ~ 22721341 (-)
LOC110497491 LOC106610007 coding downstream 243038 22688316 ~ 22694024 (-)
LOC110497495 LOC106610003 coding downstream 350051 22521992 ~ 22587011 (-)
LOC110498560 LOC106610034 coding upstream 61747 23010861 ~ 23013816 (-)
LOC110498673 LOC106609991 coding upstream 80130 23029244 ~ 23056148 (-)
LOC118941356 LOC106610036 coding upstream 130251 23079365 ~ 23080354 (-)
LOC110497482 LOC106610017 coding upstream 172394 23121508 ~ 23168994 (-)
LOC100305151 styx coding upstream 370087 23319201 ~ 23327595 (-)
G1603262 NA non-coding downstream 98958 22837715 ~ 22838104 (-)
G1603153 NA non-coding downstream 202231 22691584 ~ 22734831 (-)
G1603177 NA non-coding downstream 205952 22724326 ~ 22731110 (-)
G1602898 NA non-coding downstream 278898 22657936 ~ 22658164 (-)
G1602890 NA non-coding downstream 283025 22653539 ~ 22654037 (-)
G1603934 NA non-coding upstream 117305 23066419 ~ 23066719 (-)
G1604032 NA non-coding upstream 272094 23221208 ~ 23221477 (-)
G1604034 NA non-coding upstream 273756 23222870 ~ 23302771 (-)
G1604090 NA non-coding upstream 353413 23302527 ~ 23360584 (-)
G1604113 NA non-coding upstream 416106 23365220 ~ 23370434 (-)
G1602763 NA other downstream 521019 22415418 ~ 22416043 (-)
G1602753 NA other downstream 533225 22403516 ~ 22403837 (-)
G1600030 NA other downstream 2800501 20127211 ~ 20136561 (-)
G1600014 LOC106609977 other downstream 2828271 20107915 ~ 20108791 (-)
G1599758 LOC106609957 other downstream 3295059 19638760 ~ 19642003 (-)
G1604902 NA other upstream 1024676 23973790 ~ 23974106 (-)
gpr137c LOC106602981 other upstream 1241584 24176332 ~ 24206622 (-)
LOC118941548 fabpl other upstream 1603424 24552373 ~ 24554024 (-)
LOC110497546 LOC106603015 other upstream 1861606 24792012 ~ 24844151 (-)

Expression


Co-expression Network