LOC110497480 (LOC106602906)


Basic Information

Item Value
gene id LOC110497480
gene name LOC106602906
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 23348571 ~ 23357829 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021573603.2
ATTGCCATTAGAGTGAGTCATCTTAGGAAGTTCGGTGAAGGGATATAGAAAGAAATACAGAACTGTTCCAAGGGATAGCTGAAATAAATGTGTCTTGGGGAAGGGATTATATAGCGTAGGCTGAGGTGGAAAGCAAACAAAGCTTCTGTCTGTGACTCACACGCAAAACGGGTCTATTCTCCGTCAACTCTGTTTTGACAGCGAAAGTAGGTGTCCTGCTGACTTTTTTTTCTTGAAGTTGGCTCTTGTAGCACACCCGAATAGGCTAGCAGTGGAGGAAAGAACAATAGCTGAAGTTATTCTCAAGGAGATAATTATTTTGGAGTGGACAAAAACAAAATCGGCTTTACTTCTTGGACTACTCCGTGAACTACGACACCTCGTCCCGCGGCAGCAGCACTTCTCCGGCCCGGCCAGAGTCATTCACGAGCGGCAGCAGCACGATCGGCAGTCCAATCTCTACCTCAAGCTACCAGAAATACCGGGCCGACATGCCTGGCTCTAGCAGTGCCTTCATCCCCACGATAAACGCCATAACGACCAGCCAGGACCTGCAGTGGATGGTGCAGCCCACAGTGATCACCTCCATGTCCAACCCTTACTCACGCTCCCACCCCTACAGCCACCACCTCTCCAACAGCCCCGGGCTCCTGGGTCACACTGCCCTCGCCCGCCCGGGTGTCATACGCTCTGTCGGGGACACCCGCGTACGACGAAGGAGAGATGAGCAGCTTACCcctgaggaagaggagaagaggagggtgaggcGCGAGAGGAACAAATTGGCAGCCGCCAAGTGCCGCAATCGCAGACGAGAGCTCACCGAGATGCTCCAAGGGGAGACTGAGGAACTGGAGGAAGAGAAGTCTGATCTACAGAAAGAGATCGAGACACTGCAGAAGGAGAAGGACAAGTTGGAGTTCATGCTGGTGGCCCACAACCCCATGTGCAAGCTGCCCCCCAACGATCGCCAACAGAGGGGCCACCACCAGCAGCAGTGTGCCCCTCTCCCTCTGACCATGCGCAACAGTCTGGGTCCCCGAGGCCCCATCAACCCCGTTGTGGTGAAGCAAGAACCTCAAGAAGACGACGTGGAAGGCAGGTCCCAGCGCTCTGTCATTAAGCCTATCTGTCTTGGGGGAGGTAGTGGGATCTTCTGCGATAGTGACAGCCTCAACACCCCGGTGGTGGCAGCCTCCACCCCAGCATCCACACCCAGCGCCCCCAGCCTCATATTCACCTACCCCAGCATGCTGGAGCCCGAGAGCCCCTCGCCATCCTCTGAGTCCTGCTCGAAGGCTCACCtgcgcagcagcagcagcggggATCAGTCTTCGGACTCCCTCAACTCGCCCACCCTCCTGGCCCTCTGAGCAGGGACAGTTATGGTGAGTTTGTGGGGGAGGGCGAGCAGCGCCCCCTTCTTGGCAGACAAAGCACACTCATACCTGGACCAAGCCAGCCGTGAGCTGTGTTCTTGCCACCAGGAACCCTCAAGGGCTAAGCCGCTTGTTTTTCTCATACGCGTCAGTGTgatttaaatcaaataaaatgtataccCAAATGTGTGCACCTGTACCAGCCAGTGTCATCCCTTCATTTCAACTCCAGCACCTCAATTTGCTTGTTGAGCAATAAACAGATGACATGGAGGTGAGAAATGCCAGCAAAGCCATTCATATGAGGCGAAAACAGTGGAAAGCAAGACATATATTTTTAGATCAACATTAAGTAAAGCCATCTGGTGACAGTTGCACTCTCCTACGATCAATTTATCAATAAATCACTAAATGAGAAATAATTTCCTTGACATCCCTCCTGTTTGAAGGAGGGATACAGAGACAATGGAGAGATTTCAAAAGACAGTGTTCATAAACATCTGACTATTTCTATATCTACTTGTATTTATGGCGTGTGCTAATATTTTCTAAATGTGTCCTTGCGTTCTGATGTCTTCTGATCTGGCTGTAGAACAGCAAAAATGGTTCATAGGGTGAGCTGTAAAGCCACAGTGTCTCATAGGAAAAGAGCCAATTTTTACTCAATGCCTTGTTTGTCACCAGTCTACTCCTAACATTGATCATAGTATCGATGGCCATCATATTGATGTTTTCCTCAGTAACGTACCTGAACTATATGCATTTATTACAAGTTTGTGCGATTTACATTGTGAGGGATTTCTCTTCTGTGTGGTGGTTGAATACAATTTATTTTAAGGAGCAGCATGGGAGGCATTGGGGTTTAAATGCTGAAGTGATATCTGAGGAGAAATTGAAACCGTGTTCCCTTCTACTTCTAAAATGTCATTCACCAAGACAGTTTGACCAATGAGGTTATTGTGAGCAACTCCTTATACCCCCACTACTGATGGCAAGTTCAACCAGACACTCTAGAGCTTGATTGAAAATTAGCCATTTGTTTTGTATCAGCATTCTTTTTTTCCTCTCGCCTGTAACAAACTCTGGCTTTGTCAGAAAAAGGGGATTGGATATTGCCCAGTGATCTCAATATTCCCTTGCAATAGGGTAGGTTTCGAAACCAAGAAAAGACATCTGTACTAAAGGAGTGGTCTGGTTGAACTTTTCAGATGCTACTGTGGTGTGAAAACATGGTAATAGTAACACTGGCTACATAATTTTGTAATTTCATCATTAATGTTCTTAAGGGGCAACACCAATATGTGTGCAGGTGACCCTATTATCAACAAGCACATTGTAACCTGTTCACTGGCCATTGTGGCCATTTCAGACCCATAGCAAAAACAATGCACTTCCCAATTCCTTTTGACTGATGGGACAAATGAGATTTTCTTTACAGCTGGCCTGAGGTGGAAGAGGAATGTCTTGAGGATAATGGTGAAAAAACACTCGTTTGTGTTTTATGGGACAGAGGGTTAAGGATACCAAGCACTGAAATGGATAGAATTGCAATATTTCAGATGTATTGTTTACTTCAAAAATTCTTTACATGGCCAGTGGGGTAATGACCATTGTGGTGATCACAGGACAGAAGACGGACTGAAACATTTGTTGTGCTGGGTGCAGCAAATAAGACGTAAAAAGCATTGCTGCTGTTGTGGACTAGTCACATCACTTATTGATCTTTGTTTGGATGGTCATAGTATCACATGATGGCATTTGGACAACTCCTATCATGCATTGGGATAAATTGCAGACCAAGAAAAAAAAGAACGTAATTGTCAGTTTCTTGTCTGTTCAAGTCTTTTGAACCCCCTAAAAACACGTAGGAAAGCCATCAACTTTAGATATTCTACTGTACATGTCATCTGCGGTATGTCTTCTGTTTTTGAAATCTATTTCTTATTTTTCCAAATGCTTTAATTGTTTAAAATTaatcaaaacaaacaaaacagcaaTGTGTCGCAATGTTTGTTAATTTCGTAATTCAATAATAAAAAGCATTTTCAACAAGG
>XM_021573602.2
TATTGCCATTAGAGTGAGTCATCTTAGGAAGTTCGGTGAAGGGATATAGAAAGAAATACAGAACTGTTCCAAGGGATAGCTGAAATAAATGTGTCTTGGGGAAGGGATTATATAGCGTAGGCTGAGGTGGAAAGCAAACAAAGCTTCTGTCTGTGACTCACACGCAAAACGGGTCTATTCTCCGTCAACTCTGTTTTGACAGCGAAAGTAGGTGTCCTGCTGACTTTTTTTTCTTGAAGTTGGCTCTTGTAGCACACCCGAATAGGCTAGCAGTGGAGGAAAGAACAATAGCTGAAGTTATTCTCAAGGAGATAATTATTTTGGAGTGGACAAAAACAAAATCGGCTTTACTTCTTGGTAATTACCTTAAGTTATTTAATTTCGAAGAGACTGGATTTATTGCACTAATAGCCAGGCTATTTTGACAATTTTGTGGGGGTTCTCAGTGTTTTAAAGACTGTTCAAGTCAACTGTTCGTTTTTTTTGAGAGCGTCGGAGCTCATATCATCTACTGAAATCGTCCTCTTTCCTGGATCATGTACCAGGACTACTCCGTGAACTACGACACCTCGTCCCGCGGCAGCAGCACTTCTCCGGCCCGGCCAGAGTCATTCACGAGCGGCAGCAGCACGATCGGCAGTCCAATCTCTACCTCAAGCTACCAGAAATACCGGGCCGACATGCCTGGCTCTAGCAGTGCCTTCATCCCCACGATAAACGCCATAACGACCAGCCAGGACCTGCAGTGGATGGTGCAGCCCACAGTGATCACCTCCATGTCCAACCCTTACTCACGCTCCCACCCCTACAGCCACCACCTCTCCAACAGCCCCGGGCTCCTGGGTCACACTGCCCTCGCCCGCCCGGGTGTCATACGCTCTGTCGGGGACACCCGCGTACGACGAAGGAGAGATGAGCAGCTTACCcctgaggaagaggagaagaggagggtgaggcGCGAGAGGAACAAATTGGCAGCCGCCAAGTGCCGCAATCGCAGACGAGAGCTCACCGAGATGCTCCAAGGGGAGACTGAGGAACTGGAGGAAGAGAAGTCTGATCTACAGAAAGAGATCGAGACACTGCAGAAGGAGAAGGACAAGTTGGAGTTCATGCTGGTGGCCCACAACCCCATGTGCAAGCTGCCCCCCAACGATCGCCAACAGAGGGGCCACCACCAGCAGCAGTGTGCCCCTCTCCCTCTGACCATGCGCAACAGTCTGGGTCCCCGAGGCCCCATCAACCCCGTTGTGGTGAAGCAAGAACCTCAAGAAGACGACGTGGAAGGCAGGTCCCAGCGCTCTGTCATTAAGCCTATCTGTCTTGGGGGAGGTAGTGGGATCTTCTGCGATAGTGACAGCCTCAACACCCCGGTGGTGGCAGCCTCCACCCCAGCATCCACACCCAGCGCCCCCAGCCTCATATTCACCTACCCCAGCATGCTGGAGCCCGAGAGCCCCTCGCCATCCTCTGAGTCCTGCTCGAAGGCTCACCtgcgcagcagcagcagcggggATCAGTCTTCGGACTCCCTCAACTCGCCCACCCTCCTGGCCCTCTGAGCAGGGACAGTTATGGTGAGTTTGTGGGGGAGGGCGAGCAGCGCCCCCTTCTTGGCAGACAAAGCACACTCATACCTGGACCAAGCCAGCCGTGAGCTGTGTTCTTGCCACCAGGAACCCTCAAGGGCTAAGCCGCTTGTTTTTCTCATACGCGTCAGTGTgatttaaatcaaataaaatgtataccCAAATGTGTGCACCTGTACCAGCCAGTGTCATCCCTTCATTTCAACTCCAGCACCTCAATTTGCTTGTTGAGCAATAAACAGATGACATGGAGGTGAGAAATGCCAGCAAAGCCATTCATATGAGGCGAAAACAGTGGAAAGCAAGACATATATTTTTAGATCAACATTAAGTAAAGCCATCTGGTGACAGTTGCACTCTCCTACGATCAATTTATCAATAAATCACTAAATGAGAAATAATTTCCTTGACATCCCTCCTGTTTGAAGGAGGGATACAGAGACAATGGAGAGATTTCAAAAGACAGTGTTCATAAACATCTGACTATTTCTATATCTACTTGTATTTATGGCGTGTGCTAATATTTTCTAAATGTGTCCTTGCGTTCTGATGTCTTCTGATCTGGCTGTAGAACAGCAAAAATGGTTCATAGGGTGAGCTGTAAAGCCACAGTGTCTCATAGGAAAAGAGCCAATTTTTACTCAATGCCTTGTTTGTCACCAGTCTACTCCTAACATTGATCATAGTATCGATGGCCATCATATTGATGTTTTCCTCAGTAACGTACCTGAACTATATGCATTTATTACAAGTTTGTGCGATTTACATTGTGAGGGATTTCTCTTCTGTGTGGTGGTTGAATACAATTTATTTTAAGGAGCAGCATGGGAGGCATTGGGGTTTAAATGCTGAAGTGATATCTGAGGAGAAATTGAAACCGTGTTCCCTTCTACTTCTAAAATGTCATTCACCAAGACAGTTTGACCAATGAGGTTATTGTGAGCAACTCCTTATACCCCCACTACTGATGGCAAGTTCAACCAGACACTCTAGAGCTTGATTGAAAATTAGCCATTTGTTTTGTATCAGCATTCTTTTTTTCCTCTCGCCTGTAACAAACTCTGGCTTTGTCAGAAAAAGGGGATTGGATATTGCCCAGTGATCTCAATATTCCCTTGCAATAGGGTAGGTTTCGAAACCAAGAAAAGACATCTGTACTAAAGGAGTGGTCTGGTTGAACTTTTCAGATGCTACTGTGGTGTGAAAACATGGTAATAGTAACACTGGCTACATAATTTTGTAATTTCATCATTAATGTTCTTAAGGGGCAACACCAATATGTGTGCAGGTGACCCTATTATCAACAAGCACATTGTAACCTGTTCACTGGCCATTGTGGCCATTTCAGACCCATAGCAAAAACAATGCACTTCCCAATTCCTTTTGACTGATGGGACAAATGAGATTTTCTTTACAGCTGGCCTGAGGTGGAAGAGGAATGTCTTGAGGATAATGGTGAAAAAACACTCGTTTGTGTTTTATGGGACAGAGGGTTAAGGATACCAAGCACTGAAATGGATAGAATTGCAATATTTCAGATGTATTGTTTACTTCAAAAATTCTTTACATGGCCAGTGGGGTAATGACCATTGTGGTGATCACAGGACAGAAGACGGACTGAAACATTTGTTGTGCTGGGTGCAGCAAATAAGACGTAAAAAGCATTGCTGCTGTTGTGGACTAGTCACATCACTTATTGATCTTTGTTTGGATGGTCATAGTATCACATGATGGCATTTGGACAACTCCTATCATGCATTGGGATAAATTGCAGACCAAGAAAAAAAAGAACGTAATTGTCAGTTTCTTGTCTGTTCAAGTCTTTTGAACCCCCTAAAAACACGTAGGAAAGCCATCAACTTTAGATATTCTACTGTACATGTCATCTGCGGTATGTCTTCTGTTTTTGAAATCTATTTCTTATTTTTCCAAATGCTTTAATTGTTTAAAATTaatcaaaacaaacaaaacagcaaTGTGTCGCAATGTTTGTTAATTTCGTAATTCAATAATAAAAAGCATTTTCAACAAGG

Function

NR:

description
fos-related antigen 2-like isoform X1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09030 FOSL2; fos-like antigen 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021573603.2 False 3433 mRNA 0.46 5 23348571 23357828
XM_021573602.2 True 3622 mRNA 0.46 4 23348571 23357829

Neighbor

gene id symbol gene type direction distance location
LOC100305151 styx coding downstream 20976 23319201 ~ 23327595 (-)
LOC110497482 LOC106610017 coding downstream 179577 23121508 ~ 23168994 (-)
LOC118941356 LOC106610036 coding downstream 268217 23079365 ~ 23080354 (-)
LOC110498673 LOC106609991 coding downstream 292423 23029244 ~ 23056148 (-)
LOC110498560 LOC106610034 coding downstream 334755 23010861 ~ 23013816 (-)
LOC110498671 bre coding upstream 66410 23424239 ~ 23567099 (-)
LOC110497537 LOC106602955 coding upstream 700543 24058372 ~ 24159732 (-)
gpr137c LOC106602981 coding upstream 818503 24176332 ~ 24206622 (-)
LOC110497541 LOC106602991 coding upstream 959504 24317333 ~ 24345566 (-)
LOC110497542 LOC106603001 coding upstream 1016729 24374558 ~ 24385860 (-)
G1604034 NA non-coding downstream 45800 23222870 ~ 23302771 (-)
G1604032 NA non-coding downstream 127094 23221208 ~ 23221477 (-)
G1603934 NA non-coding downstream 281852 23066419 ~ 23066719 (-)
G1603262 NA non-coding downstream 510467 22837715 ~ 22838104 (-)
G1603177 NA non-coding downstream 617461 22724326 ~ 22731110 (-)
G1604113 NA non-coding upstream 7391 23365220 ~ 23370434 (-)
G1604134 NA non-coding upstream 28016 23385845 ~ 23386180 (-)
G1604135 NA non-coding upstream 28920 23386749 ~ 23387094 (-)
G1604136 NA non-coding upstream 29959 23387788 ~ 23403277 (-)
G1604394 NA non-coding upstream 401741 23759570 ~ 23804571 (-)
G1602763 NA other downstream 932528 22415418 ~ 22416043 (-)
G1602753 NA other downstream 944734 22403516 ~ 22403837 (-)
G1600030 NA other downstream 3212010 20127211 ~ 20136561 (-)
G1600014 LOC106609977 other downstream 3239780 20107915 ~ 20108791 (-)
G1604902 NA other upstream 615961 23973790 ~ 23974106 (-)
LOC118941548 fabpl other upstream 1194709 24552373 ~ 24554024 (-)
LOC110497546 LOC106603015 other upstream 1452891 24792012 ~ 24844151 (-)
sptlc2a sptlc2 other upstream 1494640 24847088 ~ 24908731 (-)

Expression


Co-expression Network