LOC110497546 (LOC106603015)


Basic Information

Item Value
gene id LOC110497546
gene name LOC106603015
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 24792012 ~ 24844151 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021573699.2
TGGTGTCTGCGAAGGTGACTGGGACTGAACAgatggtgacagagagagagaagcagcgaCGAATGTAGATGACAAACGATTATTCTCAAGCAGTCATAGAAGAGGTTCCTTATAACAGGCACAGCAGAGCGCATGCGAGCATATTTGAGTTAGCAGCATTTAAGGTTAGAGAAAGTTACTTATTAAAACTCGGGATAAACTCAAGTCCATTTATTTCAAAGGAGTATACCCACAAGGTTGTAATAGCAGGACCGAAGAAGCGTGTACGGAAGGAGACAAGAATAAGGAGACGAAGCGTCTGGACAGTGTAAAGTCAAGTGAGGATAGGTAGGCAACATAGCTACCAGCCGATAGCCTGATCTAGTTCTGAACGGTTTTGTTATAAGACTAagactggatattggcgggagaAGAGCCAACGGGAATTAATGATCACAGTGCAAAATATTTTAAGTAACCTTTGAGCGTCAACGTTGGAAGTTACCTAATGGCGCATTTGGGGAGCAAAGAGCACAGATGAGACGCATCAAATTGGTTCAAAATTCAGCTCCAGCTCTGAAAACTGAGTTCACGTTCAAACAACATTGGATTAAGAATCGTATATCGCAAAGTCTTACATATTGATTTCGGATTTATATTGATTATATTTAGGCTATGGATCAGAGGCGAGGGTTCTGAAAACGTGTCCAGCACGCCGAGCGGCTTCTAAATATCTGCTGTTGCTTTCCACACCGACCACAGCATCGCAACACCAGCAAACACCGACGAAACCAACAGCTGTTGTCCCAACTTGGAAAAGACATGCAGAAGATGCACAGGAAGGTTAACCTGCTGTGGGTAGTCTTCTTGACGATGACTCAGGTGTCAATCAAGAGCTTCCCCACCAACAGTCACAAAAGTGCAGTCCCCAAGGACAGGAGCACTGCGACCACGGAGGCTAGCCCTGGTGGCGATGTGGGTGAGACTCTGGAGGACCTCCAGCAGCAGAACCAGCTCCAGAGCCTGGCATCATCCAACCCATCCTCTCAGAGACCCCGACGCCGTGGCTGGTCCCAGGGGGTTCTACCCAAACCAGAACCAGAGGAGGACCCAGAACCCTTCATCCTGGACCTCAGGAACTTCCCTGAGCTGGCCAACGCAGACCTGGGATCTCATAACCCTAATATACAGgtgACCATTGAGGTGGTGGAGGAcccacagacagagatggagatggaCCTGGCCAaggagggtggggaggggggCCGCAACGACTGGTCCCTGTCATCGGAGGAGTGGCTGGGCCACAAGAAGCTGTTCTGGCCTCTGTTCTGGGAGTACCCAGACCAGGCTGAGAGCGGGCCTGGCAGCAGGGCCAGCCTAGAGGAACAGGAGCAGCCCACAGAGGACTATAACTACAACCCTGAGGAGCAGGAACCTGTGCTTAGTGGGACCGGGGGGACTGGGGTGGGGACAggcgtgggggtggggggtggctGGGGCAGCCGCTGGAGCAGCAACAAGGGATGGGACTCCAAGGAGAACTACGagtacgaggaggaggagtggagcgcCTGGTCACCATGCAGTGTCACCTGTGGCCACGGCAACCAGAAACGTATCCGTTCATGTGGTTACGCGTGCACGGCGACCGAGTCTCGGACCTGTGACCTGGACAGATGCCCAGaTGACCTATTAGCAGTGACTGAGCTGATACCTCTGGAGACAACAAATGGCACTGACTCCCTTGACACAAACGTGGACAGCTGTGAGAAGTGGCTGAGCTGTAAGAACGACTTTCTCCAGAAGTACCTCCACCAGGTGCTGACCGAACTACCCAGCTGCCCCTGCTCCTACCCGTCCGAGGCCGTCTACAGTGCCGTCAACATCTTCGACAAGACTCTGCGTAAGACCTACCGCTGGCGTGACGCCTCCGGCCCCAAAGAACGGCTGGACATCTACAAGCCCTCCGCCCGCTTCTGCACACGCTCAATGCTCTCCTTCGACAGCACCACGCTGGCCGCGCAGCACTGTTGCTACGGTGACCACATGAAGCTGATCACACGGGGGAAAGGGGCGGGCGCGCCAAACCTCATCAGTACGGAGTTCTCACCGGAGCTGCATTACAAAGTGGACGTGCTGCCCTGGATCCTGTGTAAAGGGGACTGGAGCCGCTTCCACTCTGTGAGGCCGCCCAACAACGGGCTGCAGTGTGCCCACAACCCCACAGAAGACGTGTACCAGGCTGAGCTAGAGGAGGCCCGTGAgtactgagggaggagagggggaggagtacTGAGATCCTGAGTGGGGAGAGACACACGTGGTTCCAATGGCTCTATTGGATTTGGGCATGGGCCACATACTGAATATATTGTGTTAACTATCAGTTGCTTTGGATGAAAGGAAACCTGGACATCCCCTCCCCCTTATTCAATGTTTGGTCACATTGTGGCACAGAGTTTAGTGAACACCTACATTTTTCTAGTCAGGCTTAACCCATCCAAAATTGAGTCAAGTTGAATActcttttttcaatttttttatttatttttaagttGAATACTCTTATCTGGTGTGCGTGGGAAAACTCTATGATCGTCACGTCTTAATGGCGCGTTGTAATGACATCATCACCATCAAGCGTTTCCTCATTGGATGACTCATCGGAATCCACCTGCCAATTGGAATATGTTTTCCCGTGGATGACTTACTGTGGTGTTACGGGAAGAGAAAAAACAACTATTTTCTAACTGGTAATTTATTGCTTGTGAAAGTCCGAATTTTGGAGAGCGTTTTTTTTTGGGCTACACTCAAAAaacaagaagaaaaaaacactGGTTTGTAAACATTGGGACATTTTAAAGAGGGAGAGACTGCAATGAGATTGTCCTAGTTCTCTCTGACACCCCTCAACCCACCACCCCATAGACTCACATGTGCTGCTGCTATTGAGAAAATGGATGGGGGGATGGGTACAGGGGGATGGGATGGCTCAGGGGTTGCCATGAGCTGTTCCAGAACCCCTGAGGGAACATGGAGGAACATGGATAGTGTATTTATTGGACTCATATTGGGCCTGTATTGTATTTACTCAAATACTCTGATGTCTCATGAAAGGAATTCCTGTCAAGCTGCTAAAATGGGGATGAATTCAACACAGAATGTTAGTTGTTGTTTGTCTTAGACTTGAAGCTCTCTCTCACAATCTCTGTCTTCTttctatccacctctctctcccttctctctctctctctctctctctctctctctcctggccccactccagtcggaagaaaaaaaacagactgATCAAACACAGGCCCAAGATGCATTGTGCTTTTCTTACTTTCTTATTTCATGTCAAGCCACATATTTCTTTGGAGACGTTGACCCCTAGAACTCTATTGTGTTATTCATCCAGTCATATCCAGTATCAGAGGACCAGATACTCATCCTCCTGAGCCATTTGGCCGTAATGCTTCGTCAGATAAAGTTGCATGGGTCATGGTTAGCTAATCCTGGGGGAAACATAAAAAATACATTGTTGAAggtctctctgttgttctctctctctttctcgctctcatcGACAGACGTACCGCTTGTTTTCCTCCTAAGGATTGCTCCATCGTTTAATCTGATCCATAATTGAATCGTATTGAGATGTTTTCCTTTTATCGCCTGTTAACAAGTCACGGTGTTGCATTCCTCGCAACCCGAGACACCCGGAGAGACAGTCGTAGATTTGccggtggagagggagagaggaaaacccTTGGTAGGGGGCCTTGAAAGGAGAGAGACACTAGGACTCTCCAGGGGTGAGGGGGAAGATGGAGTGAGGCTGGAGGTAGAAGTGAAGGTgcaggagagggctgaggggaGGGGTGTCTGGGCTCAGTTGATGCATGGAGGTCCTTTCTCCAGAGAGGAGTGGGAGTTGAGCAGAGGGGAAGTGGAGAGACATCTCTGTAAACAGTGGAACCCTTTGAAGAGCTCTCCCCTTCACTGGTGTCCAAGACCTgctgcctctccccctccaccctgtctTGAAGCCTGGTGTTGTTTTAAGGTCTTAATCCTAACCCTGGTTATCAGACTGAGTGCCATTGAGAGATGTTGAGGCTGAACACGTCCTGAAAGAATAGTGTTGATGGACAGCTCTCCCGCTCCACACTGCAATGACAACAGCAGAAACAACACACAACCTTTGGTGTTACACACTCGGTTTctctttcttattttttttaacattttagtaatttagcaaatgctcttatccagagcaacttacagtagtgagtgcatccAATCGTTAtactttttcatactggtcccccgtagGAAATGaatccacaaccctggcattgcaagagccatgctctaccaactgagccacacaggccTTATCCTATGCTTCCCTTTTTTTATACTCTAAttgcagccaggtcacccgtgatacaagtccaTGTTCGATGTCCATCCACATCTGACGATGTCGGGAAATGATGTGtaaaccggccactaggagcaatAGTGAGCACTGTTAGCAAAGTAGGTTTTTGGTTTTgctatggtgttgtgttgtggacagggattgGGTGTTGCACGTTTGCAAGTTCAGAACCAGCAATGGAAAGTCTTTTTGTTTTGAAGGGTATCCCAAACCTTCAaacttaccttaaccattcagagttactGCTTAACCTaagaatttggagttaatgcctaagcttaaccttaaacacactgaaatttgacatttggaacaacttctAAATTTGACGTTTAAGAAACATGGATGATGTCTAATTCTaagtctaattctgacgtgagactgtgggAGCCGGTAGCTTGCTTGCtccttttctccttccctccctctctctctccctcgccctcatCCATGCCCATTCATAGCTGGCTCAAGTTGGCATAGGGGAATTCTCTGTAGGTTGTCATCGGGCCGTCACTaaagacaaacacagacacacacacacacacacacacacgcagagtcaGGCAGCCCTCCAGTATTCCCTCAACATCCTGCACTCTGCCATATCGAAGCCAGTTAAGCGAATAGCGTTTAGAAACTTCACAGAGATCCCAATTCATCAAGATGCCAATCACAATAAGAACACAGAGGGCTGTAGTAGTTGGACTCAGACACACTGACGAACATAATATGAGAAGAGCGTTACAGCCTCTGGTATGAACAACGTTTTTTTCCATAAAATTCTCTCAGATGAAACAGCAGTATGACATGCGTTCTCCTTCATCTGTTGAGACACGGTGCTGGTAACATTTGTCCACATTCTCTGATCAAAGCCTTGCCATTTTTCACCCTTTTTTTccccttaaccccccccccttcGGAGGacacaaatatattttttgttttttacagcaTTTCtgttgtacatacagtacattgcacatatacatacatacattgcacatatatattttacatacatggtactttGATATATAGCAATCACATGACAATAATACATTACCGAACatgagctctttaatcccacccctcagccactctcagcccatcccacctatcactgCAGACCACCCTCGTTtagtttccatgtgccatatatttttcaattgtgctgtgatgttttacatggATTTTGAAGATTTTAATCACATAGTATCCAAAGCCTTGTCATTGAATGTGATGTGTTCCTATGGACTCAAACTGCCTTGACCATCACATTGTTGCTTCATATCACcaccaaacacacagtcaagTGAACACAGACAAAGTAATGCAGTGATTCATATGAGGAGTGTACGTTGGGATATGACCAGTTAACCATCCACAGTCCCTGGAAGATATCCATTACTTCATGCCAGACACAGTCAGAATGGACTCAATTAAATAGGgaatttgtcccaaatggcagcctaatgcctatatagtgcacagtattggaccagaaccctatgggcagggccctggtcaaaagtagtgcgttataaagggaatagggtactatttgggacGAAGTCCCTCTTTAATTGAGTCCATTCTGACTGTGTTTGGCATGGAGTAATGGATACCTTCACACTACACTGGGTTCATCTTCCATTGGGGCCCAGCTGTGAAAACCCCCTGAATCCTCATGGCATTAACAGCTCAGACTCACACTGCTGCATGGCTCTCCAGCCTGCCTGCTGCTGCCTCAGGTTTCACCatcacattacactacactacacccactacacccagtggaggctgctgaggggaggactacTCGTAGTAATAatggttttcatgtgtttgataccattccattcactctattccagccattacactccattccagccattattatgagctgtcctcccctcagcagcctccactgaccctcACAGCATATCTCTCTGTCCTAGGAATGtactctgtgttgtgtgtatgcacATGCAAGCGTGTATGTTTTTCAGAGGACCTCTAGGTTCtgaatgattgtgtttctaaTGCTATCTAGTCACGGTGTGTGTATTTCTAAAGGGCTAGATGGGCCTAGTCTATATTCAGTAGATCAGTGGCGGTTGGTGCCatttaagattagggaggactTTTTTTTTATGCGcaatggccttatttctattaaagcatattggatgactgtcattcatattccattcaatgTAACAtgaataggtttaggctacatgATACTTGCATTTTCCCTATAtctatcatgaggttgctacaacctagtctatgaatgaaagtttcTAACAGATCGAGAGacaaattggagtaatcaaggtgacagacagtgacacattcaataccgccttgcacactcttgcctgaatATAGCtaatctagggtgtaatcattagtccaaacagctgcaaacgagagtttctattggacgaATTCAGGTAggtttatccccgtttcgttccgtttatttccgtttaagaaacgtttttcaacagaatcgtcGGAATGAATACCCCTGATCCCCcgcacacacagttcactttcatagcagccacatacaaacagaatCATCACTTTGCTCAttatataattccttctcgcatctacgtgCTATCCTcccctcaccttttccctttcagtgcacaacagctgtctgtggcCATGCGAAATTAAACTtttcaagccaaaccttcataccataatcgctaaccactacacacagcctacatcgttgtcaccatattagctaacgtcatagtcaacatagctactagaactaacgtgttagtaaaccctCTACAATTGCGCAGTACAGTGTACatcaagcagtttagcagttacaccggcgggactcgtggcaataaattaattaaaccgcttaccttgacttggaagagttccagtattggatagccttagccagaTAGCTAACATAAATAGCATGCTTCTGTTTGTGCCGGGTGTTTaagtaggctaaattagctaactgaattagctagctaagtgaatgaaagtaaaaagaaaatgaaaaaaagaaatacagctagctctcgctctcgctctctttgctgcttctccttaatttttgcACTCAACAAAAAAAAGGCAGTGAATGATTTCTTAAAGATCACTCTAATCCAttgttctaggttttgtattgaagtcaatgtacccagaggaggacggaaaatagctgtccacaccatggtgctaccccagagagtgctgttgaggctactgtagaccttcattgcaaaacagtgtgttttaatcagttatttggtgacatgtgaatatatttagtatagtatcATCTTAAAAGGATAACCTTTAGAACTTTTCACTCTTTTCCATGAAATGACTGAGATGGATGGTCCTCCCCTCCTCTGAGGAGGAGCCTCCGCTGCAGTAGATAgatatctgtgtatgtgtgttctgtaGGAGTGCTGAGTAAAGTATGGCtacagaggaaaagggagagaaggagagagacgaggaaaagagagaaggatggaaggaaggCTGGCTATCAGAACTGTTTCTTAGAAAGTATTGACATTGGCCTGATTCTCaaagttattttattttgaaagcaAGCCAGGGCCACCTCtccctcttgccctctctctttctctgtacagtgtttctgtacagtaTGAAACGGACCATTTTTCAATGGCCACTGTTAAATCCACTCAGCACAGTATGAATTGCTTGACTCTTTTCCATGTACCTTACAGATTCTGTCTCATTGTTGGACCTTTTACCTATTTAGCAAAGGGAAATGTTAAGGTGATAGAGCTTGTGAGAAGGGAATAAAGTGCAACGATTATACAA
>TU1838053
GTGACTGGGACTGAACAgatggtgacagagagagagaagcagcgaCGAATGTAGATGACAAACGATTATTCTCAAGCAGTCATAGAAGAGGTTCCTTATAACAGGCACAGCAGAGCGCATGCGAGCATATTTGAGTTAGCAGCATTTAAGGTTAGAGAAAGTTACTTATTAAAACTCGGGATAAACTCAAGTCCATTTATTTCAAAGGAGTATACCCACAAGGTTGTAATAGCAGGACCGAAGAAGCGTGTACGGAAGGAGACAAGAATAAGGAGACGAAGCGTCTGGACAGTGTAAAGTCAAGTGAGGATAGGTAGGCAACATAGCTACCAGCCGATAGCCTGATCTAGTTCTGAACGGTTTTGTTATAAGACTAagactggatattggcgggagaAGAGCCAACGGGAATTAATGATCACAGTGCAAAATATTTTAAGTAACCTTTGAGCGTCAACGTTGGAAGTTACCTAATGGCGCATTTGGGGAGCAAAGAGCACAGATGAGACGCATCAAATTGGTTCAAAATTCAGCTCCAGCTCTGAAAACTGAGTTCACGTTCAAACAACATTGGATTAAGAATCGTATATCGCAAAGTCTTACATATTGATTTCGGATTTATATTGATTATATTTAGGCTATGGATCAGAGGCGAGGGTTCTGAAAACGTGTCCAGCACGCCGAGCGGCTTCTAAATATCTGCTGTTGCTTTCCACACCGACCACAGCATCGCAACACCAGCAAACACCGACGAAACCAACAGCTGTTGTCCCAACTTGGAAAAGACATGCAGAAGATGCACAGGAAGGTTAACCTGCTGTGGGTAGTCTTCTTGACGATGACTCAGGTGTCAATCAAGAGCTTCCCCACCAACAGTCACAAAAGTGCAGTCCCCAAGGACAGGAGCACTGCGACCACGGAGGCTAGCCCTGGTGGCGATGTGGGTGAGACTCTGGAGGACCTCCAGCAGCAGAACCAGCTCCAGAGCCTGGCATCATCCAACCCATCCTCTCAGAGACCCCGACGCCGTGGCTGGTCCCAGGGGGTTCTACCCAAACCAGAACCAGAGGAGGACCCAGAACCCTTCATCCTGGACCTCAGGAACTTCCCTGAGCTGGCCAACGCAGACCTGGGATCTCATAACCCTAATATACAGgtgACCATTGAGGTGGTGGAGGAcccacagacagagatggagatggaCCTGGCCAaggagggtggggaggggggCCGCAACGACTGGTCCCTGTCATCGGAGGAGTGGCTGGGCCACAAGAAGCTGTTCTGGCCTCTGTTCTGGGAGTACCCAGACCAGGCTGAGAGCGGGCCTGGCAGCAGGGCCAGCCTAGAGGAACAGGAGCAGCCCACAGAGGACTATAACTACAACCCTGAGGA

Function

NR:

description
isthmin-2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021573699.2 False 8302 mRNA 0.46 6 24792012 24844151
TU1838053 True 1395 TUCP 0.50 3 24810720 24844137

Neighbor

gene id symbol gene type direction distance location
LOC110497545 LOC106603014 coding downstream 64494 24704456 ~ 24727518 (-)
LOC110498564 fabpl coding downstream 224703 24565455 ~ 24567309 (-)
LOC118941548 fabpl coding downstream 237988 24552373 ~ 24554024 (-)
LOC110498563 fabpl coding downstream 250177 24539981 ~ 24541835 (-)
LOC110497543 LOC106603011 coding downstream 316476 24398570 ~ 24475536 (-)
sptlc2a sptlc2 coding upstream 2937 24847088 ~ 24908731 (-)
dio2 dio2 coding upstream 834056 25678207 ~ 25686102 (-)
ston2 ston2 coding upstream 981639 25825790 ~ 25876073 (-)
foxn3 foxn3 coding upstream 1049073 25893224 ~ 26008243 (-)
efcab11 efcab11 coding upstream 1212955 26057106 ~ 26143352 (-)
G1605410 NA non-coding downstream 106451 24685271 ~ 24685561 (-)
G1605399 NA non-coding downstream 117157 24674646 ~ 24674855 (-)
G1605390 NA non-coding downstream 125802 24665874 ~ 24666210 (-)
G1605380 NA non-coding downstream 139722 24651984 ~ 24652290 (-)
G1605214 NA non-coding downstream 277253 24513735 ~ 24514759 (-)
G1606289 NA non-coding upstream 338696 25182847 ~ 25183049 (-)
G1606301 NA non-coding upstream 359647 25203798 ~ 25204007 (-)
G1606304 NA non-coding upstream 366145 25210296 ~ 25210670 (-)
G1606398 NA non-coding upstream 538609 25382760 ~ 25395212 (-)
gpr137c LOC106602981 other downstream 585574 24176332 ~ 24206622 (-)
G1604902 NA other downstream 817906 23973790 ~ 23974106 (-)
LOC110497482 LOC106610017 other downstream 1647468 23121508 ~ 23168994 (-)
G1602763 NA other downstream 2375969 22415418 ~ 22416043 (-)
G1608529 NA other upstream 1579880 26424031 ~ 26427303 (-)

Expression


Co-expression Network