sptlc2a (sptlc2)


Basic Information

Item Value
gene id sptlc2a
gene name sptlc2
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 24847088 ~ 24908731 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036954482.1
AGGGGTTGCATTCAGTTCATCTCAACGATTGCTACGTTGCGTGATGGTTTATACTGAACAAGACGTTTCCCCAAAACGGTGCGTACCGTCCTTCAACATCATTTGAGGTACGTCTGCTACTCTTTGGTGGGTGTGGCCTGATCAATACGGGGGATACCATTTGAAATCGCAAAACTCGTTCAGCAAGTTACAGTTATAGCCGTTATGTTGAATCAAAGGTTGAACATCGTGCTGTCTTACTGAACACACCCCTTGTGTCCGCGTTGTGGATTTTTGGGTGGGTTTGCGAGCGCACAACCCGGACAAGCACCAAAAACGAGTTCCCCATTCTGTGCTAGCCAGATACATGCAAGTTACTGTAGCCTCCACAATCATAGGCAAGGATGACCGAAAGCTCCGCGAACAAGCCGGCCAATGGACAAGTTTGTCACCGAGTAAAGAACGGAGTTAAACCGGGCAGAAACGGTTTCATAAAAAACCATCACCATTACCATCATCAGCAGCCGATGTACTGCTATCCCGAGGACAAGgtgcagCACACCGCGTGTAATGGCAGCAACGGCCTGGGCCTGTACAGTCGTCCCTTCATCGAGTCTTTTGAGGAAACGCCCATGCTGGTGGCGGTCCTCACCTACATGGGCTACGGCATCCTCACCATCTTCGGATACCTCCGAGACTTCCTCCGGGACTGGAAGATCGAGAGGTGTCACGTTGCCCGCgagagggaggagcagaggGACTTTGTCCCACTTTACCAGGACTTTGAGAACTTTTACACCAGGAACTTATACATGCGCATCCGTGACAGCTGGAACCGACCCATCTGCAGTGTCCCGGGGGCCAAGGTGGACCTAGTGGAACGTGTGTCACCTGACTACAACTGGACCTTTGActacacAGGCAAAGTGGTTGAAGGTGTAATAAACATGGGTTCCTATAACTACCTGGGCTTTGCTGAGAACACGGGTTACTGTGCTGACGCGTCCGCTGAGGTCACCATGAAGTACGGGGTGGGCGTGGCCAGCACCAGGCAGGAGATGGGTAACTTAGACAGACATGAGGAGATGGAGGAGCTGGTTGCTAAATTCCTGGGCGTGGAGTCGGCCATGGCTTTCGGGATGGGCTTCGCTACCAATTCGATGAACATCCCTGCCCTTACTGGCAAGggctGTCTAATCCTAAGTGATGAGCTGAACCATGCCTCTCTGGTCCTGGGAGCCAGGCTGTCTGGGTCCACCATCCGTGTCTTCAAACACAACAACATGCAAAGTCTGGAGAAGATGTTGAGAGACGCCATAGTCCACGGCCAGCCCAGAACACACAGGCCGTGGAAGAAGATCCTCATACtggtggagggtatatacagTATGGAAGGCAGTATAGTACGTCTACCTGAAGTCATAGCTCTGAAGAAGCGCTACAGGGCCTATCTGTACCTGGACGAGGCCCACAGTATTGGGGCTCTGGGGCCAGGGGGCCGAGGTGTGGTCGACTACTTTGGTCTGGACCCCCGAGACGTGGACGTCATGATGGGGACGTTCACCAAGAGCTTTGGTGCCGCTGGGGGCTACATCGGAGGCAGGAAGGAGTTGTTGGAGTACCTGCGCTCCCACTCTCACAGTGCGGTGTACGCCGCGTCCATGTCACCTCCTGTCGTGGAGCAGATCATCGCTTCTATGAAGTGCATTATGGGGGAGGACGGGACGACGCTTGgtcgTGATCGCGTGCAGCAGTTGGCAGAGAACACTTTGTATTTCCGTAGGAGACTGACAGAGATGGGCTTTATCATCTACGGAAACAACGACTCGCCCGTAGTTCCCATGATGCTCTACATGCCGGCCAAGATAGGggcGTTTGGTAGAGAGATGCTGAAGAGGAACAtcggggtggtggtggtgggcttTCCAGCCACACCCATCATTGAGTCCAGAGCACGATTCTGTATCTCTGCCGCTCACACCAAAGACATGCTCGACACGGCCCTGAGTGTGATCAGTGAGGTAGGAGACCTGCTGCAGGTCAAGTACTCCAGACACAAGAGACTGCCCTCTCTGGACTGAGTCGTCGACCATAGCATCTACGACCAGATACAAGACTGAACTGGACCACAGTGGTCTAGACCGGATCGGACCAGATTGGACTGGCAGTCTTCCACACCCAGAACCAAAATGTGCTCGCCTTGATGTCACAGAACCACTTTATTCATCTAACACAAGGTTTTAACTTTCACACGCCTGCCTTATTTTACCAGCAAACTCACTGCATCATGgcgaagaagaagaaaaaaactcggaaaacatttattttttcaaaCGATTATTTCTTACCTCTGTTTTGTCTTAAATAATGAAATGTTGGGTCTGCATCTTAATTTGTGGCATTTTGTTTCTGGAGGATTAGTAGACTGAGGACTGCTTATGTGTGCTTGTAGCTGCTTTATGTCATGCCTATGTCATGTcatctctgactgtgtgtgtttgggagaaACGGTGTGATTTGTAAAGACCAACCTAAATGTAGCTTACGAAGCTTTCGGAAGTATTTAAACAttttggaggagagatggggagttgaagaaaaacaacaagaataatcaacacaaacaaacaaactgatTTCTAAAGGTCATAAAACACACTGAGTTTCTGTTAGAAGTTTcccttaggtacagatctaggaccagcttACCCTCCACAAAACCTATCCTTACCCATTGGGGTTGAAATGTGTAACTGACCTTAGCACAGTGTCAAGGGGCAATGTTATCCTACTCTACTCAGTGATGGTATTGCTATGAAGTACAGTTTAGGAGTGCTTTGAGATGCATGTTTGGTGTAACCGACTCCTGGAGCTAAACTTTGCTGTTCTAACTTGCAGCCAGGAACCGTGTCTTACTTGAATCTCTAACTACGTTCTCTTTCCAAAGTATTTATGATTTTTATTTACAGATGACTATATCTCATAACAGGTCAGAGTGAGAGACGTTGTACCAAGGCCTTTACTTCCAGATGAGCTATGAGCACATCACTCCTCCTCGCTCGTATCCACTAGCCCTTGGTTCCAGGCTGTTTCAGCTGTAGatcctaaccacagatctaggatcagattattcTATCCCGATCCTAACGTTATCATTAGGTGGATGAACAACTATATGACCCAGTAGCGGTGGTTTGGGGGAAAACTCCACCCACTCCAGTAGAAAAAGTCTGGTATCCAGGGAAATGGATCTATCAGATGGGGGGGGGAGCAGACTTAGTCAAGACAGACTTAGTCTTAACCAAacgtgtgtgtgacagagagagttgTTTAATGTACAGATTTATTTATTCATTGTTTCcatggtttttttttttttcaatttggaaaaaatgtaacattttatCACTGGCAGCTCTGAAGCCATGTCCTGCATGCACATACCTTTACACCTCTCTGACTGATCACATGCCCTCAGTGCAATCACTACTGATGTGTATTTTATCGTTTGGCACACCTTAGCGCTGCATGCACAGTATGACATAGTCACTGACGCTGCTAGTACACCATGAAACAAGGTGCTCAACTGTACACACTACCtacatacaacactccttcctgtGGCTTTGTTTTAGTTTTTAAATACAACCTGAACTCATTCCAAAATTACTGATTTTATTGTATGAAATTGATATATCTTTGAAGACAAGGACATGTTCTGTttgtgttaaaaaaataaaaataaaaatctttCTTTGAGAGTTTATTAATATAAGTGACCTGcaaagagctggaggagagacatTTAAGATCATTGAAAATATTGAATATAGAGAACTAAATAGATTTTCATTCATTTTTCTTACTGTACAAAGAACTCTCACAATGACAAATGATTTGACTCATTCAGCTAGCTATTTTTTTGTTTCCTCAAAGGCAAAAAGTTAGAAGTAAATCTGCACTGGATGTGTGTAAAAATGTCTTTTGTATATTTCTATTTTTCTTGTTTGCACAAAGAGAAATACAACATGATACTGATGTGGTGTCAAAGTCTTAACGTCAAACTTCTTAAGATTTAAACACTGTCCTTATGCCTCATCTGTGGATGACCTGTCTCTTGGGTGAGATACAGGGTGTGAGTGGCCATTcaactgctttaaaaaaaaaatacatgtatgtgTTCTAACATAACTTGGATGTGCTACAAATAGTGCATAATAATAGCTGTACTTTTTTTGGATCAAAGAAAAATGCAGTGTTTGCTACATATCAGTGGATGACCTATTTGTACCTGTTTCACTCATGTTACGGACATCAAAATGTCATTAAAATAATGTAACAACG
>TU1838039
TTCACCTGGATTTGAAAAGCGTACCCCGCCAGCGATAGACTTCCTCATGCTCATTCAGCTGTTGCAGGGGCACAGATAAAACATGAACCAACggctccaaaaacacccaaatacatCCTTTTCAAAACGGCAACGCTCTCAGgatagtgatgcaggtcttttgatgttgtacacatgaaattgtcTCATTCTGAACTTTTTCTGCAATGTTATGTTCCATTTTGTGCCACTCGTGTTATTGCCCGTGCATGCGCACAAGGAAAAGTATAGCTTGAGTCGCACGCGTTTAGAATCGCACAACGTCCTTTACTGTTACTAAAACGTTTCAATCACGTTACAAATAAACCTTTCAGATCCTGTAAATGTACCATATCAATATAAAAACATGACATATTAACAACACAGCAACATttgagagaggagggtgaagagcaACGGCGCACAATGTAGATATCTACTTTTATGCCAAGTGTGAAATCAGAAATGTATACTTTTAGTGTTGCAAATATACTAACCTCAGAATCGACAAtaacattctattctgttctattttagGAGTTGTTGGAGTACCTGCGCTCCCACTCTCACAGTGCGGTGTACGCCGCGTCCATGTCACCTCCTGTCGTGGAGCAGATCATCGCTTCTATGAAGTGCATTATGGGGGAGGACGGGACGACGCTTGGCCCTGAGTGTGATCAGTGAGGTAGGAGACCTGCTGCAGGTCAAGTACTCCAGACACAAGAGACTGCCCTCTCTGGACTGAGTCGTCGACCATAGCATCTACGACCAGATACAAGACTGAACTGGACCACAGTGGTCTAGACCGGATCGGACCAGATTGGACTGGCAGTCTTCCACACCCAGAACCAAAATGTGCTCGCCTTGATGTCACAGAACCACTTTATTCATCTAACACAAGGTTTTAACTTTCACACGCCTGCCTTATTTTACCAGCAAACTCACTGCATCATGgcgaagaagaagaaaaaaactcggaaaacatttattttttcaaaCGATTATTTCTTACCTCTGTTTTGTCTTAAATAATGAAATGTTGGGTCTGCATCTTAATTTGTGGCATTTTGTTTCTGGAGGATTAGTAGACTGAGGACTGCTTATGTGTGCTTGTAGCTGCTTTATGTCATGCCTATGTCATGTcatctctgactgtgtgtgtttgggagaaACGGTGTGATTTGTAAAGACCAACCTAAATGTAGCTTACGAAGCTTTCGGAAGTATTTAAACAttttggaggagagatggggagttgaagaaaaacaacaagaataatcaacacaaacaaacaaactgatTTCTAAAGGTCATAAAACACACTGAGTTTCTGTTAGAAGTTTcccttaggtacagatctaggaccagcttACCCTCCACAAAACCTATCCTTACCCATTGGGGTTGAAATGTGTAACTGACCTTAGCACAGTGTCAAGGGGCAATGTTATCCTACTCTACTCAGTGATGGTATTGCTATGAAGTACAGTTTAGGAGTGCTTTGAGATGCATGTTTGGTGTAACCGACTCCTGGAGCTAAACTTTGCTGTTCTAACTTGCAGCCAGGAACCGTGTCTTACTTGAATCTCTAACTACGTTCTCTTTCCAAAGTATTTATGATTTTTATTTACAGATGACTATATCTCATAACAGGTCAGAGTGAGAGACGTTGTACCAAGGCCTTTACTTCCAGATGAGCTATGAGCACATCACTCCTCCTCGCTCGTATCCACTAGCCCTTGGTTCCAGGCTGTTTCAGCTGTAGatcctaaccacagatctaggatcagattattcTATCCCGATCCTAACGTTATCATTAGGTGGATGAACAACTATATGACCCAGTAGCGGTGGTTTGGGGGAAAACTCCACCCACTCCAGTAGAAAAAGTCTGGTATCCAGGGAAATGGATCTATCAGATGGGGGGGGGAGCAGACTTAGTCAAGACAGACTTAGTCTTAACCAAacgtgtgtgtgacagagagagttgTTTAATGTACAGATTTATTTATTCATTGTTTCcatggtttttttttttttcaatttggaaaaaatgtaacattttatCACTGGCAGCTCTGAAGCCATGTCCTGCATGCACATACCTTTACACCTCTCTGACTGATCACATGCCCTCAGTGCAATCACTACTGATGTGTATTTTATCGTTTGGCACACCTTAGCGCTGCATGCACAGTATGACATAGTCACTGACGCTGCTAGTACACCATGAAACAAGGTGCTCAACTGTACACACTACCtacatacaacactccttcctgtGGCTTTGTTTTAGTTTTTAAATACAACCTGAACTCATTCCAAAATTACTGATTTTATTGTATGAAATTGATATATCTTTGAAGACAAGGACATGTTCTGTttgtgttaaaaaaataaaaataaaaatctttCTTTGAGAGTTTATTAATATAAGTGACCTGcaaagagctggaggagagacatTTAAGATCATTGAAAATATTGAATATAGAGAACTAAATAGATTTTCATTCATTTTTCTTACTGTACAAAGAACTCTCACAATGACAAATGATTTGACTCATTCAGCTAGCTATTTTTTTGTTTCCTCAAAGGCAAAAAGTTAGAAGTAAATCTGCACTGGATGTGTGTAAAAATGTCTTTTGTATATTTCTATTTTTCTTGTTTGCACAAAGAGAAATACAACATGATACTGATGTGGTGTCAAAGTCTTAACGTCAAACTTCTTAAGATTTAAACACTGTCCTTATGCCTCATCTGTGGATGACCTGTCTCTTGGGTGAGATACAGGGTGTGAGTGGCCATTcaactgctttaaaaaaaaaatacatgtatgtgTTCTAACATAACTTGGATGTGCTACAAATAGTGCATAATA
>TU1838042
CATTTGTTCTCCTCACAGTTTATGTAGCTGATCACAGCTCTGGAGGGGAAAGGCTGGGATCATTAGGGAAATGGCTGGAGAACATGGCAACGAGTATGTGCTTGTGTGAGGGTGAACgtcgTGATCGCGTGCAGCAGTTGGCAGAGAACACTTTGTATTTCCGTAGGAGACTGACAGAGATGGGCTTTATCATCTACGGAAACAACGACTCGCCCGTAGTTCCCATGATGCTCTACATGCCGGCCAAGATAGGggcGTTTGGTAGAGAGATGCTGAAGAGGAACAtcggggtggtggtggtgggcttTCCAGCCACACCCATCATTGAGTCCAGAGCACGATTCTGTATCTCTGCCGCTCACACCAAAGACATGCTCGACACGGTAACTATCCCCCCATGCttggcacaaaatggctgccttttTCACATCAAAGACATAAAGAGCGTACACTTATGGTCCTGTGTCCTTCCGTTCTTTCTTCCATTCTATTGCTTCCACTTCCTagtgcagcgtttcccaaacttgggTACAGG

Function

symbol description
sptlc2 Contributes to serine C-palmitoyltransferase activity. Acts upstream of or within ceramide biosynthetic process and positive regulation of lipophagy. Part of serine C-palmitoyltransferase complex. Implicated in hereditary sensory and autonomic neuropathy type 1C.

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036954482.1 False 4323 mRNA 0.46 12 24847088 24908731
TU1838039 False 2902 lncRNA 0.40 2 24847212 24880338
TU1838042 True 535 TUCP 0.50 3 24852469 24856721

Neighbor

gene id symbol gene type direction distance location
LOC110497546 LOC106603015 coding downstream 2937 24792012 ~ 24844151 (-)
LOC110497545 LOC106603014 coding downstream 119570 24704456 ~ 24727518 (-)
LOC110498564 fabpl coding downstream 279779 24565455 ~ 24567309 (-)
LOC118941548 fabpl coding downstream 293064 24552373 ~ 24554024 (-)
LOC110498563 fabpl coding downstream 305253 24539981 ~ 24541835 (-)
dio2 dio2 coding upstream 769476 25678207 ~ 25686102 (-)
ston2 ston2 coding upstream 917059 25825790 ~ 25876073 (-)
foxn3 foxn3 coding upstream 984493 25893224 ~ 26008243 (-)
efcab11 efcab11 coding upstream 1148375 26057106 ~ 26143352 (-)
LOC110497555 LOC106603151 coding upstream 1320283 26229014 ~ 26262882 (-)
G1605410 NA non-coding downstream 161527 24685271 ~ 24685561 (-)
G1605399 NA non-coding downstream 172233 24674646 ~ 24674855 (-)
G1605390 NA non-coding downstream 180878 24665874 ~ 24666210 (-)
G1605380 NA non-coding downstream 194798 24651984 ~ 24652290 (-)
G1605214 NA non-coding downstream 332329 24513735 ~ 24514759 (-)
G1606289 NA non-coding upstream 274116 25182847 ~ 25183049 (-)
G1606301 NA non-coding upstream 295067 25203798 ~ 25204007 (-)
G1606304 NA non-coding upstream 301565 25210296 ~ 25210670 (-)
G1606398 NA non-coding upstream 474029 25382760 ~ 25395212 (-)
G1606597 NA non-coding upstream 788720 25697451 ~ 25697658 (-)
gpr137c LOC106602981 other downstream 640650 24176332 ~ 24206622 (-)
G1604902 NA other downstream 872982 23973790 ~ 23974106 (-)
LOC110497482 LOC106610017 other downstream 1702544 23121508 ~ 23168994 (-)
G1608529 NA other upstream 1515300 26424031 ~ 26427303 (-)
G1608576 NA other upstream 1676207 26584938 ~ 26610983 (-)

Expression


Co-expression Network