LOC118941466


Basic Information

Item Value
gene id LOC118941466
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 25973345 ~ 26002713 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005037685.1
TAAAACACCACATCAATCAATGCAAACTTCTGAAGCTCGTTGGAGGCTTTGGAGCTGTTTACGAGAATTAGTAAAGACAACTCAGAAATACTACTAACACAGGAGTGGGCATTGGTGGAAAGCGTGAGGGCCAGGAATGACATACGGCTGTCTGAAAAAAGCAGACCATTGAGGAGAACGATGACACATTTGCCAGTTTGGCATCCATCAGCCTTCCGACAATCGCCACCCTTTTGAAGAGGCACCAGATATCTATGAAACATATTTACCTGTTGCCTTTTGAGAGAAAACACCGACTAGGTGAAACAACTACGGGCCAAGTATGTTCAGGTATATCTTTGTCGATGAAGTGGGCTGCAACCTGGCCAAAACTAGGCTCTGTGGGTGGAAACTCATCGACCGTCCAAGTGCCTGGACAACGTGGGGCAAATATCTCCGTGTGCGCAGCTATCTCTGAAGATGGTGTGGTAGGACGTAAGCCATTACTTGGATCCTACAACTCTGAACACCTCATTGTGGTTCTCAATGAAATTGAGCAGGCCTGTCAAGGTGAAGGGGtcacctatgtcattgtgtgggacaaAGTCAAGTTCAACCATGCAGAGGTGGTTCAGGCATGGTTTTGGGGCCATCCCTGATTCGTGACCCTATACCTGCTCTTATACACTCCTtttttcagcatggaggtggaatgTGTACGTTCACGATCCTGTGACGTGCCACCCTCCTTCTGGCCATGGATGAGGCATGTGACGACATCAATGTCAAGCTTGGATTCGCCATGCCTAAAGGTTTTTCCCGCGGCGCATGAACAATGAGGACATTCACAGTGATATGGATGAGAATTTATGGCAAAATGCTCAAGACAGGCTTGACGCAAATTAATGAGCTCATTTCAATTTGTTTCATTTAATTTCTTACATTTGATTACAGACAGTACACATTTTGTTTGTTGCATGAATGATTGTAGAGGATGTCTTCATTAATCACACCTTTGCTTACACATTTGATATATGTTATAGAAATGATAGATTTTGTCAATTTTGTTGGGTAATGTAAGTAAGTATATTGCCTAATGTGAACtgtgtaatgtagtactgtagcaTATTACTTCTAAGGGTGATTTGAAACGTGTATCTTGCATTGtttgctattggattaactggTTGTTAAACGACAAAATTGACAAGATCTATCTTAattgttgtgttttggtgattaaaACGATGTTCTCATTACATTTTACAAATAACTTGAGAGATGTTTTCAatctaaattgtatttttttaccaggcaagtcagttaagaacaaattattattttcaatgacagtgggttaactgccttg
>TU1839387
CTAATGAATAAAACACCACATCAATCAATGCAAACTTCTGAAGCTCGTTGGAGGCTTTGGAGCTGTTTACGAGAATTAGTAAAGACAACTCAGAAATACTACTAACAGAGTGGGCATTGGTGGAAAGCGTGAGGGCCAGGAATGACATACGGCTGTCTGAAAAAAGCAGACCATTGAGGAGAACGATGACACATTTGCCAGTTTGGCATCCATCAGCCTTCCGACAATCGCCACCCTTTTGAAGAGGCACCAGATATCTATGAAACATATTTACCTGTTGCCTTTTGAGAGAAAACACCGACTAGGTGAAACAACTACGGGCCAAGTATGTTCAGGTATATCTTTGTCGATGAAGTGGGCTGCAACCTGGCCAAAACTAGGCTCTGTGGGTGGAAACTCATCGACCGTCCAAGTGCCTGGACAACGTGGGGCAAATATCTCCGTGTGCGCAGCTATCTCTGAAGATGGTGTGGTAGGACGTAAGCCATTACTTGGATCCTACAACTCTGAACACCTCATTGTGGTTCTCAATGAAATTGAGCAGGCCTGTCAAGGTGAAGGGGtcacctatgtcattgtgtgggacaaAGTCAAGTTCAACCATGCAGAGGTGGTTCAGGCATGGTTTTGGGGCCATCCCTGATTCGTGACCCTATACCTGCTCTTATACACTCCTtttttcagcatggaggtggaatgTGTACGTTCACGATCCTGTGACGTGCCACCCTCCTTCTGGCCATGGATGAGGCATGTGACGACATCAATGTCAAGCTTGGATTCGCCATGCCTAAAGGTTTTTCCCGCGGCGCATGAACAATGAGGACATTCACAGTGATATGGATGAGAATTTATGGCAAAATGCTCAAGACAGGCTTGACGCAAATTAATGAGCTCATTTCAATTTGTTTCATTTAATTTCTTACATTTGATTACAGACAGTACACATTTTGTTTGTTGCATGAATGATTGTAGAGGATGTCTTCATTAATCACACCTTTGCTTACACATTTGATATATGTTATAGAAATGATAGATTTTGTCAATTTTGTTGGGTAATGTAAGTAAGTATATTGCCTAATGTGAACtgtgtaatgtagtactgtagcaTATTACTTCTAAGGGTGATTTGAAACGTGTATCTTGCATTGtttgctattggattaactggTTGTTAA

Function

NR:

description
PREDICTED: uncharacterized protein LOC109204711

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005037685.1 False 1348 mRNA 0.41 3 25973353 26002713
TU1839387 True 1178 TUCP 0.43 3 25973345 26002538
Loading

Neighbor

gene id symbol gene type direction distance location
nrxn3a nrxn3 coding upstream 327781 25217809 ~ 25645572 (+)
adck1 adck1 coding upstream 820377 24981116 ~ 25152976 (+)
slirp slirp coding upstream 1010261 24959312 ~ 24963092 (+)
txndc16 txndc16 coding upstream 1717561 24206824 ~ 24255792 (+)
trnaa-ugc-143 NA coding upstream 1791504 24181776 ~ 24181849 (+)
tdp1 tdp1 coding downstream 140712 26143425 ~ 26205201 (+)
kcnk13a kcnk13 coding downstream 210921 26213634 ~ 26224573 (+)
LOC110497557 gcfc2 coding downstream 258648 26261361 ~ 26279307 (+)
LOC110497558 LOC106603178 coding downstream 282705 26285418 ~ 26295775 (+)
LOC110497559 LOC106603195 coding downstream 293674 26296387 ~ 26306724 (+)
G1606736 NA non-coding upstream 40703 25853551 ~ 25932650 (+)
G1606667 NA non-coding upstream 176635 25789248 ~ 25796718 (+)
G1606658 NA non-coding upstream 195575 25777539 ~ 25777778 (+)
G1606656 NA non-coding upstream 199224 25773578 ~ 25774129 (+)
G1606653 NA non-coding upstream 205249 25767905 ~ 25768104 (+)
G1606875 NA non-coding downstream 31710 26034423 ~ 26034709 (+)
G1606876 NA non-coding downstream 32146 26034859 ~ 26035086 (+)
G1606883 NA non-coding downstream 42120 26044833 ~ 26045041 (+)
G1606886 NA non-coding downstream 48324 26051037 ~ 26051544 (+)
G1606901 NA non-coding downstream 67493 26070206 ~ 26071058 (+)
G1606716 NA other upstream 148527 25824484 ~ 25824826 (+)
G1605451 sptlc2 other upstream 1119416 24851175 ~ 24853937 (+)
LOC110497498 LOC106610000 other upstream 3511731 22423424 ~ 22462109 (+)
G1602216 NA other upstream 3555804 22417202 ~ 22417549 (+)
G1602007 LOC106610024 other upstream 3952354 22019067 ~ 22020999 (+)
G1607702 NA other downstream 1517250 27519963 ~ 27522078 (+)
G1607901 NA other downstream 1861410 27864123 ~ 27864595 (+)
G1609741 NA other downstream 2639620 28642333 ~ 28646521 (+)
cdan1 cdan1 other downstream 2793679 28796261 ~ 28816106 (+)

Expression

LOC118941466 Expression in all Baseline Samples

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LOC118941466 Expression in each Bioproject

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LOC118941466 Expression in each Sample
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Co-expression Network