fuca2 (LOC106603269)


Basic Information

Item Value
gene id fuca2
gene name LOC106603269
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 26691129 ~ 26706187 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021573740.2
TTTTAGCAAAGGTGTTCCTGTTTTTCTCATGTGATTCATTTGCGGAAGCATCATGTGATATCGGTAAGCTATTTTAGATGCAAAACTCAACTGAACGCAGCTTTCGGTTACCTGACTTCGTAGGAGTTATGTCTTCTTCAAAGTTAGCCCTCGTTTCTGTCGCACTTCTCCTGATGATTACTGTATGCAGTTGTAAATATGAGCCTACCTGGGAATCCATCGACTCCCGACCTTTGCCAGAGTGGTATGACCAGGCCAAGTTCGGAATATTCATTCACTGGGGAGTGTTTTCTGTTCCAAGCTTTGGTAGCGAGTGGTTCTGGTGGTTTTGGCAGAAGCAGAAGATAAAGTCCTATGTTGACTTCATGCAGAAGAACTATCCTCCAGACTTCAAGTATCAAGACTTTGCACCACAGTTTACAGCTGAGTTCTTTGATCCCAAAGAATGGACTGACATCTTTGCCTCATCCGGGGCAAAATATATTGTCCTCACCACGAAACACCATGaagGCTTCACTCTGTGGGGTTCGGAGAACTCCTGGAACTGGAACGCAGTGGACGTGGGTCCAAAACGTGATCTTGTCGGAGAAATGGCTGGAGCACTCAGAGCCAACAGCGACCTGCGTCTGGGACTGTACCACTCTCTGTTTGAGTGGTTTAACCCGCTTTACGAGCAGGACGCTGCCAACCTGTACACTACCAACCTCTTCCCCACAACTAAGACGCTGCCTGAGCTCTATGAGATCATCAACAAGTACAAGCCGGAGCTGCTGTGGTCCGATGGAGATGGGGATGCTCCTGATAAATACTGGAACAGCACCGGATTCCTGGCTTGGCTATACAACGAGAGccCAGTGCGAGAGACCGTGGTGACCAATGATCGTTGGGGCTACGGCAGCATCTGTACCCATGGAGGCTACTACACCTGCGATGATCGCTACCAGCCCGGACACCTGCTCAAACACAAATGGGAGAACTGCTTTTCGATAGACAAAGGTTCCTGGGGTTACAGGAGAAACGCCCAGCTTAAAGACTACTTCACTATCGAGCAGCTTGTGGCGACATTGGTGGAGACCGTGTCCTGTGGAGGGAATCTGCTGCTGAACGTCGGACCTACACATGACGGACGCATCGCCCCCATCTTTGAGGAGCGTCTGAGGCAGATGGGTCAGTGGCTGGGGGTCAATGGAGAGGCCATCTACAACACCACCGCATGGAGGGCCCAGAATGACAGCATCATACCTGGCATCTGGTACACTGCTAAACCACAGGACAAGGCCATCTATGCAATTCTCCTGGACTGGCCTCCAAGTGGATATGTTGTTCTGAATGAACCTATTGTTTCTACAGGAAAGACTCAGGTGGTGCTGCTTGGTCACAAGCCACTGTACTGGGAGCCGGTGAAGCCTCGTGGTCTGAAGGTGTTTCTGCCTCAACTGTCTTACAGTCAGATGCCATGTCACTGGGCCTGGACCCTACGCCTGACCGGTGCCGCATAGGAAAGAATGCAGGGTCGTGTTTATTagcaaaaaaaaattgaaaacaaaaacaagtgCTTCTTATTGAACAAGTTCAGATAGTTTGTTTGTCCTTTTTCTTCTGTTCTGTGCCTACTGAATATGACCTGGTTTTAAGCAGAGGGGTGCAGTGCTAGGCCACTGCAGACATGGCTGGAGGGCCTCAATTGTTGGACTAGCTGTTTTTTCTCGCTTCTCAACTATGGGTGTGTTTGTTTTGCATGGCCTGGTGAGTTTGCACATTTTAGACCATTCCAATGGTCCTGAAGTGAAACCTCCACCCACCTGGGGCACCGGTCAATTCAAATGAGCACACCCAGTTTATATAATTGTGAGGAAGTAAAATAGCTTGCAGATCATGTGCCACTTCTTTGCAGAAGGGAGTGCTTAGACCATGGTATCAACCATTGGTCTAAAATGGCTAGCTGCTAGCTTTTATCATAGGCCAACCCAACCTAGCCAATTGGCCATTTTAGACCGATTGTTTAAATCATGGTGTAACCAAAAGTTCACAATGACCCCAGAGTTTTGTTTTTAAGTGTGTGGGGAGGACCTTTCTTTGTGGAGAACTGATGGTAATTCTACAACTTAGAGGCCAGTATGGAACCTGAATGTACACAATTGtttcatgtttttttaaattttagtTCATTAAGAAGACTAATGAAATTGATTTTAAATTACGTGAATAATTCTTGCGATTGGTGTTTCATAATGATTTTTGCACTTTTTTCTATAAGGGATTGATACTGTATGCACTGAAATTGAACATGTGAATTTCAAAGGCTTTTATCAGATTTGTATATTGTTTTCAGGATTGTGAATGACCATCACAGCAACTTCTTAAACTAATGCCAATCCATATGTAATTTTTATTAGGAGTTGAATGCATTTGATACGTTTTAATTGTTGTATGGCTTTACAAATTACATACATACAATTTATTTGAATTGAATAAACCTTTAACTGTTATAAAATA

Function

NR:

description
plasma alpha-L-fucosidase

GO: NA

KEGG:

id description
K01206 FUCA; alpha-L-fucosidase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021573740.2 True 2496 mRNA 0.45 7 26691129 26706187

Neighbor

gene id symbol gene type direction distance location
LOC110497570 LOC106603258 coding downstream 10821 26669796 ~ 26680308 (-)
LOC110497567 LOC106603250 coding downstream 29399 26655013 ~ 26661730 (-)
LOC110497568 LOC106603844 coding downstream 36219 26651469 ~ 26654910 (-)
LOC110498692 LOC106603236 coding downstream 50595 26617454 ~ 26640534 (-)
trnal-cag-28 NA coding downstream 77678 26613369 ~ 26613451 (-)
LOC110497574 LOC106603280 coding upstream 17495 26723682 ~ 26735552 (-)
LOC110497579 LOC105015404 coding upstream 77311 26783498 ~ 26791128 (-)
LOC110497578 scml4 coding upstream 85185 26791372 ~ 26808704 (-)
LOC118941467 LOC100194722 coding upstream 135825 26842012 ~ 26844988 (-)
fbxo30a LOC106603398 coding upstream 158695 26864882 ~ 26872820 (-)
G1608672 NA non-coding downstream 76705 26614211 ~ 26614424 (-)
G1608574 NA non-coding downstream 78905 26611107 ~ 26612224 (-)
G1608575 NA non-coding downstream 80973 26609397 ~ 26610156 (-)
G1608653 NA non-coding downstream 109772 26580826 ~ 26581357 (-)
G1608643 NA non-coding downstream 118522 26572360 ~ 26572607 (-)
G1608763 NA non-coding upstream 60664 26766851 ~ 26767159 (-)
G1608804 LOC106603381 non-coding upstream 150056 26856243 ~ 26857489 (-)
G1608863 NA non-coding upstream 329115 27035302 ~ 27037775 (-)
G1608904 NA non-coding upstream 357540 27063727 ~ 27065477 (-)
G1609001 NA non-coding upstream 526104 27232291 ~ 27291107 (-)
G1608576 NA other downstream 80146 26584938 ~ 26610983 (-)
G1608529 NA other downstream 263826 26424031 ~ 26427303 (-)
ston2 ston2 other downstream 857752 25825790 ~ 25876073 (-)
dio2 dio2 other downstream 1005027 25678207 ~ 25686102 (-)
G1606398 NA other downstream 1295917 25382760 ~ 25395212 (-)
shprh shprh other upstream 205210 26887874 ~ 26912468 (-)
G1608844 LOC106603413 other upstream 231683 26937870 ~ 26941380 (-)
G1608988 LOC106603498 other upstream 489561 27195748 ~ 27201735 (-)
G1608992 NA other upstream 500043 27206230 ~ 27207354 (-)
nkx2.9 nkx2-8 other upstream 1172274 27877963 ~ 27879920 (-)

Expression


Co-expression Network