LOC110497578 (scml4)


Basic Information

Item Value
gene id LOC110497578
gene name scml4
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 26791372 ~ 26808704 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021573752.2
cacacacacacacacacaccattacagtGGAATCTGCCCTGCTTGGATATTCCACTCTGCGTTGCGGTTCAAGAGATTTAGAAGCAGGCAAATACACTCAGAtacagacagaacagaggaggatTCAGTAGGAGATCAACTGAAAAGGGATATACTCTCCAATCCTCATTCTTTCTGATGCTCCAATGAGTGTACTTGCAGCAGCACAGAAAGCAGACAACAACAGTGAAATGCAGTCGCCTGCAgtgtctccttccttcctccccagCCAGCCAGGAAAGATTCCcggcaggaagagagggagacccCCACTTCATCGCAAGATGGATTTTCCAACCCACTACCCTgattcccttcctcctctcaaaGTTCccaagaagagggggagaaagccTGGCTTCAAGCTGAAGCCCAGGATGGTGATGACTCCCCTGGCCATCTCACCTCCCAGCAGCACCCCAGAACCAGACATGAGCTCCATCCCCCAGGATGCTGCGACCATCCCCCACTCTGCCACGCCCCAGGTGCTCACAGTGTGTATCTACATCAACAAGCAAGCCAACATGGGTCCTAACCTGGATAGGAAGAAGCTGCAGCAGCTCCCAGATCATTTTGGACCTGACAGGCCTTCCGTGGTGCTGCAGCAGGCTGTCCAGGGGTGCATCGACAGTGCCTTCCAGCAGAAAGCTGTGTTCACTCTCCTCACACAGGGCTACGGAGGAGAGAAAATATCAGCCACCTTCGATGGGAAGCAGCACCTTCTGAGTCTGCCTGTGGTCAACAGCGTCGGCTACGTGCTACGCTTCCTCAAGAAGCTCTGTCGTAGTTTACACTGTGAAAACCTCTTCAGCGACCAACCAATCACCCAGCATAATGCCTCCTACCAATCAGAGGCTGAAACCTCCATGCCAGAGGAGTACCTTCTGGACCCGTCAGACAAACGCTACTCAATGGACCCAGGTGACTCCGCCTTTAGTGCCATAAGCTCCTCCTACTCATCCAAACCGTCCTATGGGTTTCGCTCCTCGCAGCAATTCCCCAACAGCTCCTCCCCCATGGGCATGTGTAGACAGACGTCTAGTCCAAATACTTTCCTGGAAGGTAACAGGACAGCGTACAATCCATCTCAGGACTCCCAGGAATCCAAGGTGCCCCCCAGTAAGGACCCTTCCACCTGGAGTGTAGAGGACGTGGTGTGGTTCATCAGAGACGCTGACCCCCATTCCCTGGGCCCTCATGTCGACATATTCAGGAAGCATGAGATAGACGGCAACGCGTTGTTACTTCTAAAGAGTGAGATGATCATGAAGTACCTAGGACTGAAGCTGGGACCAGCCCTGAAGCTCTGCTATCACATCGACAAACTAAAACAAAACAAGTTCTGAATCTGAACATTTTTTCACTTCATCAATCTGTGGGACCCAACTTTGTGCTATATTTTACTAATTATTTAGCATTTTCAGATGCTATGTAGCTgatgaaaaaaaatgtattctgacAGAATACAACGTTTTGGGATATTCTAGTTTTGATGTTGAAATAACTTTTTGGTTTATACAGATGACACAATATGCAAATTCTGGAATGCATAACTGATACACTGGCAGACAATATTGGGAAAAGTAGACTATATTACTTTGAGGATACAGTTGTCCCATAAATTAGTTTATAATGTGCCCAAAGCATATAGCAAGTCACATTTATGATCTGTTGAGAAGTGTGAATTATTTTAGATAAACTATTATTTATACTTGGTCTTCGAAAAACGTAGTTAAGGCCTCACAAATGTGTGATAAACAGATAAAAATGGTCCCATATTGTTTTGATTCTATACCCTCACAAAAGTTATTTGAATGTGTCATAGGGTTGAAGATACAGTTTCACATAATGGTTTTTCAAGCTCTATACACATCAATGTAAACTCATATTGTGAAGCATGCGATTAGAAACAGGAATTTAAGCCcatgttaaacattattaaactgttgttgtttttttacacaaAATAATGTAAACTAAACTCAGTGCAGAAATAAAAAATGACTTTGCATATTGTTTTACATACTATTTTGATAGAATTGTcaaccaacaaaaaaaacacgtTTGCGCTCAAATACATGACAATGAGCCATTTCTAGTTGAATATACCAGATTGTCAAATAATTATCATCGCCAAGACGCCTCACAAATTCATTGAAACTCGATTGTGTGGATATTTACTATATACATGTTTTACTATGTTATCATTCTGGAAACAGATTTGGAGAGCATAAGGGATGACAACACTCACCGGGGAAAAATGTCTAAGGACCTACAGTATTGGGTTATGAGGCCATATAGCATTGCTTGTGTGTGCCAGTTTGGCAGTATGTGTACATTTTAGGAACCAATGTATGTGAATGCTGCTGTATATTGATTACATGTTAGCCATGCCAAGTCAAATCAAGCTGGGACGAtgtcttttattttgaaaatcATGTTGGAAAGATGTACTGTAAGTCAGAGAATGACCAATGTGTGGATGAGTTTATTTGTACTGGTGCTAAAGAAATTCTCAATGTATTGAATATCTCATGTTTGCTTTTGTGTTGTGAGTTTTAAATGGAAAACACTCAAATGTGTGTATTTAACCTGGCTGTGTATCCTAAGTATTAAATTAAGAAAATATTAAGGGGACAAGGTATGGTTTGAGGAGCATCTTTCTTTGTGATATCAACCAATTTACGGAATGAAATGATGCTTAGGATTCATGGAAAAATGAGAATTAAAGATACCAAATGTGTCCACATGGTGACACAATCATATGTTAATTCAGATAGTTCTGCTCCCTCCTGATgcaacattatttattacaagctACTTCAGTATATTTGAATTAGTCAAACAGTATATATAGCCTATCCTTTTTTTACAGCCATGTTTGCATTGGAAGTTAGGCTACATAGGCTACATGCAGAAATCGTTGCAAATGTAGAATAGGGCAACATGCCTTACTGCAGTAGGCTTTGCAGGGGCATAAGTGGTAAGTGGTATAATCTGATTGAATATAACTGTTAAAGTGTAAATATTTACTTAATATTCCATTATGATGCATAGCCCTTCAACAAAACCAAATAAAAGCCCCCAGGGTAAAAACACA
>XM_036954535.1
cacacacacacacacacaccattacagtGGAATCTGCCCTGCTTGGATATTCCACTCTGCGTTGCGGTTCAAGAGATTTAGAAGCAGGCAAATACACTCAGAtacagacagaacagaggaggatTCAGTAGGAGATCAACTGAAAAGGGATATACTCTCCAATCCTCATTCTTTCTGATGTGTAATGAGATgtctgcagccagccagccagcctgtgtgccgtgcagcagtagcagcagcagcagagacgaAAGGAGCAGGGAGAAACACGTACAGTACAGCAGCTAGAGGCAAAATGGCTTTCACAGCCTGCTGAGGGAGTGTGCTGTGCATAGAACCTTCTCCTGGTGATCTGGACTCTAACAGGGATCGAAGAAGGGAAGAGCTTGCTTCTCAAGCGTTCTAGATCAGAGGAGATCAGCTCCAATGAGTGTACTTGCAGCAGCACAGAAAGCAGACAACAACAGTGAAATGCAGTCGCCTGCAgtgtctccttccttcctccccagCCAGCCAGGAAAGATTCCcggcaggaagagagggagacccCCACTTCATCGCAAGATGGATTTTCCAACCCACTACCCTgattcccttcctcctctcaaaGTTCccaagaagagggggagaaagccTGGCTTCAAGCTGAAGCCCAGGATGGTGATGACTCCCCTGGCCATCTCACCTCCCAGCAGCACCCCAGAACCAGACATGAGCTCCATCCCCCAGGATGCTGCGACCATCCCCCACTCTGCCACGCCCCAGGTGCTCACAGTGTGTATCTACATCAACAAGCAAGCCAACATGGGTCCTAACCTGGATAGGAAGAAGCTGCAGCAGCTCCCAGATCATTTTGGACCTGACAGGCCTTCCGTGGTGCTGCAGCAGGCTGTCCAGGGGTGCATCGACAGTGCCTTCCAGCAGAAAGCTGTGTTCACTCTCCTCACACAGGGCTACGGAGGAGAGAAAATATCAGCCACCTTCGATGGGAAGCAGCACCTTCTGAGTCTGCCTGTGGTCAACAGCGTCGGCTACGTGCTACGCTTCCTCAAGAAGCTCTGTCGTAGTTTACACTGTGAAAACCTCTTCAGCGACCAACCAATCACCCAGCATAATGCCTCCTACCAATCAGAGGCTGAAACCTCCATGCCAGAGGAGTACCTTCTGGACCCGTCAGACAAACGCTACTCAATGGACCCAGGTGACTCCGCCTTTAGTGCCATAAGCTCCTCCTACTCATCCAAACCGTCCTATGGGTTTCGCTCCTCGCAGCAATTCCCCAACAGCTCCTCCCCCATGGGCATGTGTAGACAGACGTCTAGTCCAAATACTTTCCTGGAAGGTAACAGGACAGCGTACAATCCATCTCAGGACTCCCAGGAATCCAAGGTGCCCCCCAGTAAGGACCCTTCCACCTGGAGTGTAGAGGACGTGGTGTGGTTCATCAGAGACGCTGACCCCCATTCCCTGGGCCCTCATGTCGACATATTCAGGAAGCATGAGATAGACGGCAACGCGTTGTTACTTCTAAAGAGTGAGATGATCATGAAGTACCTAGGACTGAAGCTGGGACCAGCCCTGAAGCTCTGCTATCACATCGACAAACTAAAACAAAACAAGTTCTGAATCTGAACATTTTTTCACTTCATCAATCTGTGGGACCCAACTTTGTGCTATATTTTACTAATTATTTAGCATTTTCAGATGCTATGTAGCTgatgaaaaaaaatgtattctgacAGAATACAACGTTTTGGGATATTCTAGTTTTGATGTTGAAATAACTTTTTGGTTTATACAGATGACACAATATGCAAATTCTGGAATGCATAACTGATACACTGGCAGACAATATTGGGAAAAGTAGACTATATTACTTTGAGGATACAGTTGTCCCATAAATTAGTTTATAATGTGCCCAAAGCATATAGCAAGTCACATTTATGATCTGTTGAGAAGTGTGAATTATTTTAGATAAACTATTATTTATACTTGGTCTTCGAAAAACGTAGTTAAGGCCTCACAAATGTGTGATAAACAGATAAAAATGGTCCCATATTGTTTTGATTCTATACCCTCACAAAAGTTATTTGAATGTGTCATAGGGTTGAAGATACAGTTTCACATAATGGTTTTTCAAGCTCTATACACATCAATGTAAACTCATATTGTGAAGCATGCGATTAGAAACAGGAATTTAAGCCcatgttaaacattattaaactgttgttgtttttttacacaaAATAATGTAAACTAAACTCAGTGCAGAAATAAAAAATGACTTTGCATATTGTTTTACATACTATTTTGATAGAATTGTcaaccaacaaaaaaaacacgtTTGCGCTCAAATACATGACAATGAGCCATTTCTAGTTGAATATACCAGATTGTCAAATAATTATCATCGCCAAGACGCCTCACAAATTCATTGAAACTCGATTGTGTGGATATTTACTATATACATGTTTTACTATGTTATCATTCTGGAAACAGATTTGGAGAGCATAAGGGATGACAACACTCACCGGGGAAAAATGTCTAAGGACCTACAGTATTGGGTTATGAGGCCATATAGCATTGCTTGTGTGTGCCAGTTTGGCAGTATGTGTACATTTTAGGAACCAATGTATGTGAATGCTGCTGTATATTGATTACATGTTAGCCATGCCAAGTCAAATCAAGCTGGGACGAtgtcttttattttgaaaatcATGTTGGAAAGATGTACTGTAAGTCAGAGAATGACCAATGTGTGGATGAGTTTATTTGTACTGGTGCTAAAGAAATTCTCAATGTATTGAATATCTCATGTTTGCTTTTGTGTTGTGAGTTTTAAATGGAAAACACTCAAATGTGTGTATTTAACCTGGCTGTGTATCCTAAGTATTAAATTAAGAAAATATTAAGGGGACAAGGTATGGTTTGAGGAGCATCTTTCTTTGTGATATCAACCAATTTACGGAATGAAATGATGCTTAGGATTCATGGAAAAATGAGAATTAAAGATACCAAATGTGTCCACATGGTGACACAATCATATGTTAATTCAGATAGTTCTGCTCCCTCCTGATgcaacattatttattacaagctACTTCAGTATATTTGAATTAGTCAAACAGTATATATAGCCTATCCTTTTTTTACAGCCATGTTTGCATTGGAAGTTAGGCTACATAGGCTACATGCAGAAATCGTTGCAAATGTAGAATAGGGCAACATGCCTTACTGCAGTAGGCTTTGCAGGGGCATAAGTGGTAAGTGGTATAATCTGATTGAATATAACTGTTAAAGTGTAAATATTTACTTAATATTCCATTATGATGCATAGCCCTTCAACAAAACCAAATAAAAGCCCCCAGGGTAAAAACACA
>XM_021573751.2
TGTCTTCTGCAGCCGGCTGGGGGAGAGCATCCGTCGAATAGCCTGAGCAGTAGAAAAGATCACGGAATCGGAATTATCGGTACATCCTGAAGCTGTATTAGTACTAGAACTAGTTAAATAATTAGCGAGACCACCTGTGGCGGTTATTGGTTAACGTGCGAAGAGCAGAAACGTAACGTTATTCATTTAGCGAGCAAACTGTCCAAAGCCAAAAGGTTCAGTCAGCGATTCGATATTCCTTCGTCTCTAAAAGCTCCAATGAGTGTACTTGCAGCAGCACAGAAAGCAGACAACAACAGTGAAATGCAGTCGCCTGCAgtgtctccttccttcctccccagCCAGCCAGGAAAGATTCCcggcaggaagagagggagacccCCACTTCATCGCAAGATGGATTTTCCAACCCACTACCCTgattcccttcctcctctcaaaGTTCccaagaagagggggagaaagccTGGCTTCAAGCTGAAGCCCAGGATGGTGATGACTCCCCTGGCCATCTCACCTCCCAGCAGCACCCCAGAACCAGACATGAGCTCCATCCCCCAGGATGCTGCGACCATCCCCCACTCTGCCACGCCCCAGGTGCTCACAGTGTGTATCTACATCAACAAGCAAGCCAACATGGGTCCTAACCTGGATAGGAAGAAGCTGCAGCAGCTCCCAGATCATTTTGGACCTGACAGGCCTTCCGTGGTGCTGCAGCAGGCTGTCCAGGGGTGCATCGACAGTGCCTTCCAGCAGAAAGCTGTGTTCACTCTCCTCACACAGGGCTACGGAGGAGAGAAAATATCAGCCACCTTCGATGGGAAGCAGCACCTTCTGAGTCTGCCTGTGGTCAACAGCGTCGGCTACGTGCTACGCTTCCTCAAGAAGCTCTGTCGTAGTTTACACTGTGAAAACCTCTTCAGCGACCAACCAATCACCCAGCATAATGCCTCCTACCAATCAGAGGCTGAAACCTCCATGCCAGAGGAGTACCTTCTGGACCCGTCAGACAAACGCTACTCAATGGACCCAGGTGACTCCGCCTTTAGTGCCATAAGCTCCTCCTACTCATCCAAACCGTCCTATGGGTTTCGCTCCTCGCAGCAATTCCCCAACAGCTCCTCCCCCATGGGCATGTGTAGACAGACGTCTAGTCCAAATACTTTCCTGGAAGGTAACAGGACAGCGTACAATCCATCTCAGGACTCCCAGGAATCCAAGGTGCCCCCCAGTAAGGACCCTTCCACCTGGAGTGTAGAGGACGTGGTGTGGTTCATCAGAGACGCTGACCCCCATTCCCTGGGCCCTCATGTCGACATATTCAGGAAGCATGAGATAGACGGCAACGCGTTGTTACTTCTAAAGAGTGAGATGATCATGAAGTACCTAGGACTGAAGCTGGGACCAGCCCTGAAGCTCTGCTATCACATCGACAAACTAAAACAAAACAAGTTCTGAATCTGAACATTTTTTCACTTCATCAATCTGTGGGACCCAACTTTGTGCTATATTTTACTAATTATTTAGCATTTTCAGATGCTATGTAGCTgatgaaaaaaaatgtattctgacAGAATACAACGTTTTGGGATATTCTAGTTTTGATGTTGAAATAACTTTTTGGTTTATACAGATGACACAATATGCAAATTCTGGAATGCATAACTGATACACTGGCAGACAATATTGGGAAAAGTAGACTATATTACTTTGAGGATACAGTTGTCCCATAAATTAGTTTATAATGTGCCCAAAGCATATAGCAAGTCACATTTATGATCTGTTGAGAAGTGTGAATTATTTTAGATAAACTATTATTTATACTTGGTCTTCGAAAAACGTAGTTAAGGCCTCACAAATGTGTGATAAACAGATAAAAATGGTCCCATATTGTTTTGATTCTATACCCTCACAAAAGTTATTTGAATGTGTCATAGGGTTGAAGATACAGTTTCACATAATGGTTTTTCAAGCTCTATACACATCAATGTAAACTCATATTGTGAAGCATGCGATTAGAAACAGGAATTTAAGCCcatgttaaacattattaaactgttgttgtttttttacacaaAATAATGTAAACTAAACTCAGTGCAGAAATAAAAAATGACTTTGCATATTGTTTTACATACTATTTTGATAGAATTGTcaaccaacaaaaaaaacacgtTTGCGCTCAAATACATGACAATGAGCCATTTCTAGTTGAATATACCAGATTGTCAAATAATTATCATCGCCAAGACGCCTCACAAATTCATTGAAACTCGATTGTGTGGATATTTACTATATACATGTTTTACTATGTTATCATTCTGGAAACAGATTTGGAGAGCATAAGGGATGACAACACTCACCGGGGAAAAATGTCTAAGGACCTACAGTATTGGGTTATGAGGCCATATAGCATTGCTTGTGTGTGCCAGTTTGGCAGTATGTGTACATTTTAGGAACCAATGTATGTGAATGCTGCTGTATATTGATTACATGTTAGCCATGCCAAGTCAAATCAAGCTGGGACGAtgtcttttattttgaaaatcATGTTGGAAAGATGTACTGTAAGTCAGAGAATGACCAATGTGTGGATGAGTTTATTTGTACTGGTGCTAAAGAAATTCTCAATGTATTGAATATCTCATGTTTGCTTTTGTGTTGTGAGTTTTAAATGGAAAACACTCAAATGTGTGTATTTAACCTGGCTGTGTATCCTAAGTATTAAATTAAGAAAATATTAAGGGGACAAGGTATGGTTTGAGGAGCATCTTTCTTTGTGATATCAACCAATTTACGGAATGAAATGATGCTTAGGATTCATGGAAAAATGAGAATTAAAGATACCAAATGTGTCCACATGGTGACACAATCATATGTTAATTCAGATAGTTCTGCTCCCTCCTGATgcaacattatttattacaagctACTTCAGTATATTTGAATTAGTCAAACAGTATATATAGCCTATCCTTTTTTTACAGCCATGTTTGCATTGGAAGTTAGGCTACATAGGCTACATGCAGAAATCGTTGCAAATGTAGAATAGGGCAACATGCCTTACTGCAGTAGGCTTTGCAGGGGCATAAGTGGTAAGTGGTATAATCTGATTGAATATAACTGTTAAAGTGTAAATATTTACTTAATATTCCATTATGATGCATAGCCCTTCAACAAAACCAAATAAAAGCCCCCAGGGTAAAAACACA

Function

symbol description
scml4 Predicted to enable chromatin binding activity and histone binding activity. Acts upstream of or within definitive hemopoiesis. Predicted to be active in nucleus. Is expressed in brain; olfactory epithelium; and retina. Orthologous to human SCML4 (Scm polycomb group protein like 4).

NR:

description
sex comb on midleg-like protein 4

GO:

id name namespace
GO:0003677 DNA binding molecular_function

KEGG:

id description
K11466 SCML4; sex comb on midleg-like protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021573752.2 False 3139 mRNA 0.42 8 26791372 26800987
XM_036954535.1 False 3380 mRNA 0.43 9 26791372 26800987
XM_021573751.2 True 3212 mRNA 0.42 8 26791372 26808704

Neighbor

gene id symbol gene type direction distance location
LOC110497579 LOC105015404 coding downstream 244 26783498 ~ 26791128 (-)
LOC110497574 LOC106603280 coding downstream 55820 26723682 ~ 26735552 (-)
fuca2 LOC106603269 coding downstream 85185 26691129 ~ 26706187 (-)
LOC110497570 LOC106603258 coding downstream 111064 26669796 ~ 26680308 (-)
LOC110497567 LOC106603250 coding downstream 129642 26655013 ~ 26661730 (-)
LOC118941467 LOC100194722 coding upstream 33308 26842012 ~ 26844988 (-)
fbxo30a LOC106603398 coding upstream 56178 26864882 ~ 26872820 (-)
LOC110497584 LOC106603407 coding upstream 64246 26872950 ~ 26887740 (-)
shprh shprh coding upstream 79170 26887874 ~ 26912468 (-)
LOC110498695 NA coding upstream 323005 27131709 ~ 27139457 (-)
G1608763 NA non-coding downstream 24213 26766851 ~ 26767159 (-)
G1608672 NA non-coding downstream 176948 26614211 ~ 26614424 (-)
G1608574 NA non-coding downstream 179148 26611107 ~ 26612224 (-)
G1608575 NA non-coding downstream 181216 26609397 ~ 26610156 (-)
G1608653 NA non-coding downstream 210015 26580826 ~ 26581357 (-)
G1608804 LOC106603381 non-coding upstream 47539 26856243 ~ 26857489 (-)
G1608863 NA non-coding upstream 226598 27035302 ~ 27037775 (-)
G1608904 NA non-coding upstream 255023 27063727 ~ 27065477 (-)
G1609001 NA non-coding upstream 423587 27232291 ~ 27291107 (-)
G1609062 NA non-coding upstream 575773 27384477 ~ 27387965 (-)
G1608576 NA other downstream 180389 26584938 ~ 26610983 (-)
G1608529 NA other downstream 364069 26424031 ~ 26427303 (-)
ston2 ston2 other downstream 957995 25825790 ~ 25876073 (-)
dio2 dio2 other downstream 1105270 25678207 ~ 25686102 (-)
G1606398 NA other downstream 1396160 25382760 ~ 25395212 (-)
G1608844 LOC106603413 other upstream 129166 26937870 ~ 26941380 (-)
G1608988 LOC106603498 other upstream 387044 27195748 ~ 27201735 (-)
G1608992 NA other upstream 397526 27206230 ~ 27207354 (-)
nkx2.9 nkx2-8 other upstream 1069757 27877963 ~ 27879920 (-)

Expression


Co-expression Network