LOC110497590 (stx11)


Basic Information

Item Value
gene id LOC110497590
gene name stx11
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 27155132 ~ 27161015 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021573781.2
ACGCAATAAAGTAGGTGGTGGGCTGGTTCCTGGCAGACACAGCTAGATGACTAAACGGAGCAGAAAGGGGAAATGATTCTTCGAGCATTTGTCTGTTCTGTTTGAATGATTTTGGTGTTATAGGATAGTCTACGGAGCACGATATCAGGTAGGATGAGAGACAGACTGGTTGACCTGAAGGGGGTGGCCCCCGCTTCTTCAGACATGGACGAGCGAGGTCAGGGTCGGGGCACTGATGACGAGGAACAGCTGGAGCACCAGACAGTGGTGTTCGAAGGCGAAGACATGATGGACAGCATCTTCAGAGAGGTCCAGTCAATCAGGAAGGAGATCGCTCTGCTCCAGGTGGATGTGAAGTGCCTGGGCAAGCAGAACTCCCGATTCCTCACCTCTGTCCGGAGGATCAGCTCCATCAAACGAGACTCCAATGCCCTGGCCAAGGGCATCAAGACCCGGGGGGAGGGCATCTACACACGGCTGGAGAAGATCGGCATGCAGCACAAAGAGCTGGAAGAAGAGCATGGTGCCCATTCTGCTCTGGTCCGCATGGTGCGCTCACAGTATGTTTCTCTCACCGGGGCCTTCCACGAGGCCATGTCTGAGTACAACCAAGCAGAGATGGGCCAGAGGGAGAACTGCAAGACCCGGATCCAGCGCCAGGCAAAGATAATGGGCAAGGAGGTGACCGGAGATCAGATTGAGGAGATGGTCGAGACGGGAAAGTGGAACGTGTTCTCCGACAACCTCCTGGCGGACGGGCGGACGGCGCGATCAGCGCTTACGGAGATCGAGAACCGGCACAAGGAGCTGGTTGAGCTGGAGAGTCGGATCAAGGACATCCATGAGCTGTTCTTTCAGATGGCTCTGCTGGTTGAGGAACAGGGGGCCATGGTGGACAACATAGAGGCCAACGTAGTCGCAACAACAGACTTTGTGGGCAAGGCCCAGGCTCAGATCAAGCTGGCGGTGAAGTACAAGAAGAACAACCCCTGTAGGAAGTTGTGCTGTTGCTGTTTCCCATGCTGCAACAAGTGAGGCAGACAGACCGATATTAGTGTTATTGTTTTATCTCAAGTCAAGATCCTCTCAAAAGTGTTTTCATGGCCATGACAATGTATTTAAAGAAGTAGAATTAATCCATTTGCAGTTGTTTACACAAGTATGCACTTGATCCTGAATATTTTCAGATGTACAGTATGGGTGTTccaatgtacactgagtgtacaaaatattaagaacaacttcttaatattgagttgaaccTACTACCATTCCCAACTGAAAGGCACTTcagtattttgtcttgcccattcaccctctgaatggcatacatttacaatccatgtctccagacttaaaattccttctttaacccgtctcctccccttcatctacactgatataagtggatttaacaggtgacatcaacaagggatcatagctttcacctgtcatggaaagagcaggtgttcctaatgttttgtgtactcatTGTATGTTTAAAATGATTTCTGCAGTTTGAACGAGGGTGCCATTTTGTATGTCATATGCAGCTATTTCTATCTCTTATTGTACATTAACACCCTTGCCTAGCTGGCGTTAGGAGAGAAGATCCAGTATCTCAATGACAAACTGCTGAAGCTAACATGCCATAGTGTGATATGGGGTGTTCCATTTCTTTaatgttgtaaaaaaataaaacatttgttcgGTGCTCCAGACTGGCAGTTAAAAGAATACTTGATTAGTCAATCAAGAATGTTTACTTGAGTGCAGTTCAAATGTTTCCTTCTCCCACTATTCCCTTTAACCTTCAGCTGTATTGAATGTTTGATTATTTGTCcattttttttatattatttatgTTTTATGACAGGATATTGTGATTTTTATGAATACAAACGCTGTAGAATGGCCCTTTGTGTTTTATTTGAGCATCTATTTTTTGATGTACACAATTACTTGATCATGATGCGTCATTCTAAACGCATAATTGTGATACATTTGAGTTTCTTTTCTTGGAGACACAACCGTTATTGCTACACTGACTGATATTGCAACTGAAGGCAACCTCAAAATGACTCAACGGGAATTTACATTGTGAAGAAAACAAGAATGTGCCTCAATTTTTCCATTGTATATAGTGCACATCACATGCAGATATCCAAGAGACCATTGCTTTTTTTAGTGTCCATCGTGAGTCAAAAACAGGCTCAGAAAATTCTCATCAGATTGCTGTGACGTGTAAGGCTAACTTTCAACGTCTGTGTTCCATAAACCCACCAGCAAGTGAGGTACCTATCTCTCTGTTTCGACAATCGCCCAATCCTAAATCAACCACTCACTGCTCCTTCCCCACATATATCTAATGATCCCGCTGTGTAGATCTGAAATGATTGGATGCGTAAACGATATAGTAATACTTCCACTATATGGACATCCATGAGCTGTTCTTCCAGATGGCTCTGCTGGTGGAGGAATAGGGGGCCATGGTGGACAACATAGAGGCCAACGTAGTCGCAACAACAGACTTTGTGGGCAAGGCCCAGGCTCAGATCAAGCTGGCGGTGAAGTACAAGAAGAACAACCCCTGTAGGAAGTTGTTCTGTTGCTGTTTCCCATGCTGCAACAAGTGAGGCAGACAGACCGATATTAGTGTTATTGTTTTTTCTCAAGTCAAGATCCTCTCAAAAGTGTTTTCATGGCCATGACAATGTATTTAAAGAAGTAGAATTAATCCATTTGCAGTTGTTTACACAAGTATGCACTTGATCCTGAATATTTTCAGATGTACAGTATGGGTGTTccaatgtacactgagtgtacaaaatattaagaacacttTAATATTGAGTTGAACCTACTACCATTCCCAACtgaaaggcacttcaatattttgtcttgcccattcaccatctaaatggcacacatacacaatccatgtttccaGGTTTAAACAACCTTCTttaacccttcatctacactgattaaagtggatttacaggtgacatcaataagggatcatagctttcaactgattcacctagtcagtctgtcatggaaagagcaagtgttcctaatgttttgtacactcagtggtaTGTTTGTTTAAAATTATTTATGCAGTTTGAATGAGAATGTGCCATTTTGTATGTCATGCAGCCATTTCTGCCTCTTTActgtaaaatatacattttatattAACACCCTTGCCTAGCTGGTGTTAGGAGAGAAGACCAAGCATCTTGATATCGAACAGAAGCTAACATGCAAGTGTGCTATGGGGTGTTCCATTTctttaatgtaaaaacaaaacactTGTTCGATGCTCCAGGCTGGCAGTTAAAGGAATACTTGATTAGTCAATCAAGAATGTTTACTTGAGTGCAGTTCAAATGCTTACTTCTCCCACTTGTCCTATAACGTTCTGCTGTATTGAATGTTtgattttacttttttttttttttttacatgacttGTGTTTATTGACAGGATATTGTGATGTTTATGAATACAAATGCTGTAGAATG

Function

symbol description
stx11 Predicted to enable SNAP receptor activity and SNARE binding activity. Predicted to be involved in intracellular protein transport; synaptic vesicle fusion to presynaptic active zone membrane; and vesicle docking. Predicted to act upstream of or within cellular response to interferon-gamma and leukocyte degranulation. Predicted to be located in phagocytic vesicle. Predicted to be part of SNARE complex. Predicted to be active in presynaptic active zone membrane and synaptic vesicle. Predicted to be integral component of membrane. Implicated in familial hemophagocytic lymphohistiocytosis 4.

NR:

description
syntaxin-11-like

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0016020 membrane cellular_component
GO:0005484 SNAP receptor activity molecular_function

KEGG:

id description
K08487 STX11; syntaxin 11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021573781.2 True 3530 mRNA 0.43 2 27155132 27161015

Neighbor

gene id symbol gene type direction distance location
trnal-uaa-59 NA coding downstream 1432 27153618 ~ 27153700 (-)
LOC110498695 NA coding downstream 15675 27131709 ~ 27139457 (-)
shprh shprh coding downstream 242664 26887874 ~ 26912468 (-)
LOC110497584 LOC106603407 coding downstream 267392 26872950 ~ 26887740 (-)
fbxo30a LOC106603398 coding downstream 282312 26864882 ~ 26872820 (-)
LOC110497591 LOC106603863 coding upstream 7892 27168907 ~ 27173184 (-)
syne1b LOC106603506 coding upstream 52269 27213284 ~ 27350889 (-)
ahi1 ahi1 coding upstream 234835 27395850 ~ 27414739 (-)
LOC110497599 LOC106603601 coding upstream 263811 27424826 ~ 27440075 (-)
LOC110497600 LOC100196682 coding upstream 279885 27440900 ~ 27448264 (-)
G1608904 NA non-coding downstream 89655 27063727 ~ 27065477 (-)
G1608863 NA non-coding downstream 117357 27035302 ~ 27037775 (-)
G1608712 NA non-coding downstream 191833 26698692 ~ 26963299 (-)
G1609001 NA non-coding upstream 71276 27232291 ~ 27291107 (-)
G1609062 NA non-coding upstream 223462 27384477 ~ 27387965 (-)
G1609081 NA non-coding upstream 256927 27417942 ~ 27418188 (-)
G1609082 NA non-coding upstream 257392 27418407 ~ 27418633 (-)
G1609103 NA non-coding upstream 310744 27471759 ~ 27472034 (-)
G1608844 LOC106603413 other downstream 213752 26937870 ~ 26941380 (-)
G1608576 NA other downstream 544149 26584938 ~ 26610983 (-)
G1608529 NA other downstream 727829 26424031 ~ 26427303 (-)
ston2 ston2 other downstream 1321755 25825790 ~ 25876073 (-)
G1608988 LOC106603498 other upstream 34733 27195748 ~ 27201735 (-)
G1608992 NA other upstream 45215 27206230 ~ 27207354 (-)
nkx2.9 nkx2-8 other upstream 717446 27877963 ~ 27879920 (-)
plekhh1 LOC106602716 other upstream 1075581 28205649 ~ 28269202 (-)
crip1 crip1 other upstream 1481273 28642288 ~ 28650251 (-)

Expression


Co-expression Network