LOC110497591 (LOC106603863)


Basic Information

Item Value
gene id LOC110497591
gene name LOC106603863
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 27168907 ~ 27173184 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021573782.2
CTCACCTGTTCCATCCACTTTCATCATTGGACATATTTAGTCACCACCTGCGTTTTCTGTGTTCCTGAGGTCACTTTAGAGtaaaagagaagaagaaatgtAACATATTTGGACGACCAACATTCATCATATTGGAAGGatgaaagaCAGATTTGGCCAACTTCAGGATGCGTTGGACgagcctggaggaggaggaggtcacaCCAATGAGGCCTTCACCAATGTGGACCTGGACCTAGATGACCTGTCTGCCCATTCGGGCAGGAACCGTGCAACAGTGGTGCCTGTCAACGACCCTGAGCTGAACAGCATTCTCCAGGAGGCCCAAAATGTTCGGCAGGAGATCCAACAGATCCAGGAAGACCATGCCCAGCTCCGGGACCAGAACTACCACGCCTTGAACAACACATTTATGGACGACACCAGTGATGTGATCAGGGACGCCAACAACATTGCAACAGACATCAAGGCCAGAGGAGGGGCTGTGTTGCAGAGCTTACACAGGATGAACAGGGAGACCAGGAAGCTGGAGGTTCAGCGAGGTAGCACTGACCACGTGGTACGCATCGCCCGGACGCAGTACACCAACCTGAGCACCACCTTCAGGGAAGTGATGTTCGACTACAACGAGACAGAGCTGGGACACAGGGAGAACTGTAAGAAACTGATCCAGAGACAGATGGCGATTGTGGGCAGAGACGTCACGTCTGAGGAGGTTGAGGAGATGATGGAGAGCGGGCAGCAGTTGAATATCTTCAACGCCCTGGCTGATGGGACGGCCCAGTCGGCACTGACACAGATCGCTAGTAGACACAAAGAGCTGCTTGACCTGGAGAAGAGGATCCAGGGGGTTCAAGAGCTGTTTCTGGATGTGGCTGTGCTGACAGAGGAACAGGGAGCGGTGCTCAACAACATCGAGACCAACGTACAAAAGACGGAGGCACCTATCGCGGGTGCCAGGGTTCAACTGAACAAAGCCAAAAGATATGACAAGAACAATCCCATCAAGAAACTGTGCTGTTGCTGCTTTCCATGTTGCATATGATTGTATATCTCATCTGATACATTGTGTATGTGATACATTCATTATCTTGATATTAATGTAAATAATGTGATTTTTTTAAAAGAAAGCAGTGGGACTGGGAGGTTGGCCTGCAATAAGGCCAGGTAACGATGGATAACCATTGCCAGGAGGGACATACTGTATGAGGGATGCATAGAAGGGCCTAAAAACTCTCTGGACTACCAACCAAACGACACTTTCAATCAAAAGAACATTGCATTGAGTTCGCAGAGAGTCTGAACTCTTTCTATTCTAGGTTTGATAATCTGGACTTTAGTACTGAGAAGGATGAGCTGCTGTGTGAACTCTTATCATTAGCACAATGGGAAGCTGATTTGGTAATAGAGGAAGCAGATGTTGATAGGGTTTTAAAATGAATAGCAGTAAACAGTCACCTAATAATAGTAATAGCAGTAaaggtcacctaatcatccccagattacaattggctcattcatccccctcctctcccctgtaactattccctagGTCGTTGCTgttaatgagaatgtgttctcagtcaacttacctggtaaaataataaaaaaaaaaaaaaaaaacaaagccaCTGGCCCAGGTAACATTAGTAACCATGTTCTGAAGTCCTGTCACAAGGACTTGTCAGGTGTGTTCTGTGAGCTGAATGCCACCAAGATCAAAGACCTTGCCATAGATTTTAGGAAGGAAACATCAGCTCCAAAGGCAATCAACATCGGTGGCCAGAGCATTGAACAGGTGGATGAGAATAAGTATCTTTGCACAATAGTTTACAATAAGCTAAACTTTTGAGCCAACTGTGGGCAAGTGTTATCAAAATGTCAATCATTGTTAATAATCCATTTGTTTTACAGTCATTTTACAGATGTTTTATTGCGTCTGTCATAACATTTAGTTTAGTTTCCTGGTTTGGCTCCATCACATGGGCAAGTCAGAATACCTTGTGGAATACCAGTGGTAAGATTAAAGGGAGAAGCCAAAAGGTACCCCTGAGACATTTACTAATACCACA

Function

NR:

description
syntaxin-11-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021573782.2 True 2072 mRNA 0.45 2 27168907 27173184

Neighbor

gene id symbol gene type direction distance location
LOC110497590 stx11 coding downstream 7892 27155132 ~ 27161015 (-)
trnal-uaa-59 NA coding downstream 15207 27153618 ~ 27153700 (-)
LOC110498695 NA coding downstream 29450 27131709 ~ 27139457 (-)
shprh shprh coding downstream 256439 26887874 ~ 26912468 (-)
LOC110497584 LOC106603407 coding downstream 281167 26872950 ~ 26887740 (-)
syne1b LOC106603506 coding upstream 40100 27213284 ~ 27350889 (-)
ahi1 ahi1 coding upstream 222666 27395850 ~ 27414739 (-)
LOC110497599 LOC106603601 coding upstream 251642 27424826 ~ 27440075 (-)
LOC110497600 LOC100196682 coding upstream 267716 27440900 ~ 27448264 (-)
trnaa-agc-7 NA coding upstream 338967 27512151 ~ 27512223 (-)
G1608904 NA non-coding downstream 103430 27063727 ~ 27065477 (-)
G1608863 NA non-coding downstream 131132 27035302 ~ 27037775 (-)
G1608712 NA non-coding downstream 205608 26698692 ~ 26963299 (-)
G1609001 NA non-coding upstream 59107 27232291 ~ 27291107 (-)
G1609062 NA non-coding upstream 211293 27384477 ~ 27387965 (-)
G1609081 NA non-coding upstream 244758 27417942 ~ 27418188 (-)
G1609082 NA non-coding upstream 245223 27418407 ~ 27418633 (-)
G1609103 NA non-coding upstream 298575 27471759 ~ 27472034 (-)
G1608844 LOC106603413 other downstream 227527 26937870 ~ 26941380 (-)
G1608576 NA other downstream 557924 26584938 ~ 26610983 (-)
G1608529 NA other downstream 741604 26424031 ~ 26427303 (-)
ston2 ston2 other downstream 1335530 25825790 ~ 25876073 (-)
G1608988 LOC106603498 other upstream 22564 27195748 ~ 27201735 (-)
G1608992 NA other upstream 33046 27206230 ~ 27207354 (-)
nkx2.9 nkx2-8 other upstream 705277 27877963 ~ 27879920 (-)
plekhh1 LOC106602716 other upstream 1063412 28205649 ~ 28269202 (-)
crip1 crip1 other upstream 1469104 28642288 ~ 28650251 (-)

Expression


Co-expression Network