nkx2.9 (nkx2-8)


Basic Information

Item Value
gene id nkx2.9
gene name nkx2-8
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 27877963 ~ 27879920 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021575227.2
CAACAATCACCATTATCTGGTCACCACTTTTCACGATACGGGACGAATCTGTAATGATGACGAGTGTTTCCTTCGGCCATTGTTGAGGCAACGGGGATAATTCTTCTGCGGGTTCACACCTACCATCATTGGATAAAGACACTCGAATCATTCAGGTACTTGGAGTCCTCGAGGAGCATATATAAGCGGCGTGAAGTACTGTTTATACAAACACTGCCtcatgtccacacacacagagtgttCTAGGTCGTCTCTGACTCTGACAGCGCTCTTCGCCATTCCTTGAGTGGATACATATTTTTACTCCTATATCAACTGTATCCTCTCATTTGGATAGTTATTACGCACAAGGATTCAGTTTTTTTTTCTGGACAGAATGGCTGTTGCTGCAAAGTTCAGTTTTTCCGTGAGGAGCATCCTGGATTTGCCTGAGCATGACGCAAAGACAGCGCAGCCTTCCCCCGGTAACTCCTGCTACAGCTCCCCTTACTCCTCCTGGATGGACAGCGACCGGAGCCCTTGTCTCTCTTCAGATGAGGGTAGCCTGGAGATCTCCCCAAACAAGTCAGACGAGTCTTCTCTGGACTCTGAGGCCGAGAAGAAGAAGAAGCGCCGCGTGCTCTTCTCAAAGGCCCAGACCTTCGAGCTTGAGAGGCGCTTCCGTCAGCAGCGCTATCTGTCAGCACCAGAGCGGGAGCAGCTCGCCCATCTCCTCAGCCTGACGCCGACGCAGATCAAGATCTGGTTCCAGAACCACAGGTACAAAATGAAGAGGTCGCGAGTAGAGGGAGCGCCACAAGACATAAACCAATCGCCAATGTTGCGAAGAGTAGTGGTACCCATCCTAGTTCGGGATGGCAAGCCTTATCAGACCTGTTTCATTAACACGGAGAAAGGAGGCTGTCTTAGACCGACCACGTCCCCGGGTACACCCTTCAGTTTGGGATACcagtctttccagcttccgtCGCCGTTCGGTCTACCTTCCCCATACCAGCATTTTGCCAGCCCGGCAGCATCTAGACACACCTTTGCTTGGAGAGACTTTCTGAACGACTCAGTTCAATTCAGTTATTTTAAGTGACTGAAAACATAAACAAGAGGACATTGCATAGAGGAACACTTAAAACCAAATATGTTTTCTGAATTCCCTTATTTTTCGAGGTACTTAAGTGTTAAACTCTCACTAATAATGTTGTATGAGAAGTAGGCTATTTTGCACATATTttatttttggtattttattaaatGTAGCCTATTGAGTGACATTTTCGAATGATTAAAGTCGTTATTAGTTTGTTGTAATCTGGTGGTAGGCCTATGGACATTATACTCCTAGATTAAGTTTTGTTTATCCAATTGGATCATTGTTGTGTTTACTTTGCGTAGGCTTATTTTATCAGTAATTTAACATTTCTGTAATTTTTATGAATTTCGAATCTACACCAAGTTAACTGTCAAAAGTACGAGGGAATTAGGATATAATTGctttggaaaatgtttttcacTTTTGTCTGGAAATGTTATAGAACATAATCGTTATATTGATTGGTTGGCCTtaaatgttttgtgtttttataGAATTACGAATAAATCTTGTACATG
>TU1842195
AACCACAGGTACAAAATGAAGAGGTCGCGAGTAGAGGGAGCGCCACAAGACATAAACCAATCGCCAATGTTGCGAAGAGTAGTGGTACCCATCCTAGTTCGGGATGGCAAGCCTTATCAGACCTGTTTCATTAACACGGAGAAAGGAGGCTGTCTTAGACCGACCACGTCCCCGGGTACACCCTTCAGTTTGGGATACcagtctttccagcttccgtCGCCGTTCGGTCTACCTTCCCCATACCAGCATTTTGCCAGCCCGGCAGCATCTAGACACACCTTTGCTTGGAGAGACTTTCTGAACGACTCAGTTCAATTCAGTTATTTTAAGTGACTGAAAACATAAACAAGAGGACA

Function

symbol description
nkx2-8 Enables DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in positive regulation of transcription by RNA polymerase II and transcription by RNA polymerase II. Predicted to be part of chromatin. Predicted to be active in nucleus.

NR:

description
homeobox protein Nkx-2.8

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021575227.2 False 1605 mRNA 0.44 2 27877963 27879920
TU1842195 True 356 TUCP 0.49 1 27878461 27878816

Neighbor

gene id symbol gene type direction distance location
nkx2.1 nkx2-1 coding downstream 19733 27855353 ~ 27858230 (-)
LOC110497613 mbip coding downstream 45258 27817693 ~ 27832705 (-)
LOC110498697 NA coding downstream 150768 27724652 ~ 27727195 (-)
hadhab LOC106603767 coding downstream 157241 27697629 ~ 27720722 (-)
LOC110497609 LOC106603760 coding downstream 180890 27690633 ~ 27697073 (-)
slc25a21 slc25a21 coding upstream 40086 27920006 ~ 28196715 (-)
LOC118941468 NA coding upstream 90490 27970410 ~ 27971427 (-)
plekhh1 LOC106602716 coding upstream 325729 28205649 ~ 28269202 (-)
tmem229b LOC106602701 coding upstream 611181 28491101 ~ 28505568 (-)
mta1 mta1 coding upstream 625967 28505887 ~ 28550457 (-)
G1609331 NA non-coding downstream 10619 27867116 ~ 27867344 (-)
G1609330 NA non-coding downstream 11402 27866316 ~ 27866561 (-)
G1609328 NA non-coding downstream 12429 27865291 ~ 27865534 (-)
G1609285 NA non-coding downstream 77578 27800073 ~ 27800385 (-)
G1609284 NA non-coding downstream 78802 27798941 ~ 27799161 (-)
G1609304 pax9 non-coding upstream 34049 27913969 ~ 27916063 (-)
G1609388 NA non-coding upstream 91761 27971681 ~ 27974692 (-)
G1609398 NA non-coding upstream 119409 27999329 ~ 28000230 (-)
G1609417 NA non-coding upstream 163274 28043194 ~ 28122872 (-)
G1609426 NA non-coding upstream 167794 28047714 ~ 28048413 (-)
G1608992 NA other downstream 670609 27206230 ~ 27207354 (-)
G1608988 LOC106603498 other downstream 676228 27195748 ~ 27201735 (-)
G1608844 LOC106603413 other downstream 936583 26937870 ~ 26941380 (-)
shprh shprh other downstream 965526 26887874 ~ 26912468 (-)
G1608576 NA other downstream 1266980 26584938 ~ 26610983 (-)
crip1 crip1 other upstream 762368 28642288 ~ 28650251 (-)
mideasb elmsan1 other upstream 844335 28704168 ~ 28735490 (-)
G1610194 ttbk2 other upstream 909501 28789421 ~ 28790413 (-)
G1611350 NA other upstream 2006425 29886345 ~ 29886690 (-)

Expression


Co-expression Network