crip1 (crip1)


Basic Information

Item Value
gene id crip1
gene name crip1
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 28642288 ~ 28650251 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036954597.1
ctctctatctctttctctttctctctctctcaagcgcacgcacgcacagacacagatacagacacaaacacacacacacacgcacacgcacacgcacacgctgTCAAAGCCTCACCCTCTATTCCTTTCCACCGAACGTATTTCCTTCTCGGTATAAATAGGAAGGCGCGCACATCTGCACTTCACAACGAGGCGTGGTTTAGAACGGACAGGTGGGCTGCTGCTGTAATACTGCCGTGAACATTAGGATACTTATTTCACTCCCGGAGACCAACACTTTAACCTGCAAACATGCCCAAGTGCCCAAAATGCACGAAGGAAGTTTACTTCGCGGAGAGAGTGACATCACTGGGGAAGGACTGGCACAGGCCCTGTCTGAAGTGTGAGAAGTGCAGCAAAACGCTGTCGGCCGGATCACACGCAGAGcACGATGGCAAGCCTTATTGTAACAACCCCTGCTACTCTGCACTATTCGGGCCTAAAGgtTTTGGACGTGGAGGAGCTGAAAGCCACACATTCACAAAGTAGAGCCACTCAGGTTCTCCAACCACACCAAGAAGAAGGCAACTCTGCATTCTACAACGTCCTCCATACCATACTAAACCAAAACAAACAACCAAAGAAGTTCCTTTTCGGGAACCACCATTTTGtgttattttctgtctttgtgttgtCTAGAGGAATCAGCCTTAATGCACAGCAGAGACGCTCTCTATTCCCACTAGTGGATCGGAGGGGTATACGAGAACCTCTCTGTTCCTTTACTTGTTCTTAAATTCTGATTAAACActatttttcaaaatgtt
>TU1842983
ACGAGGCGTGGTTTAGAACGGACAGGTGGGCTGCTGCTGTAATACTGCCGTGAACATTAGGATACTTATTTCACTCCCGGAGACCAACACTTTAACCTGCAAACATGCCCAAGTGCCCAAAATGCACGAAGGAAGTTTACTTCGCGGAGAGAGTGACATCACTGGGGAAGGACTGGCACAGGCCCTGTCTGAAGTGTGAGAAGTGCAGCAAAACGCTGTCGGCCGGATCACACGCAGAGcACGATGGCAAGCCTTATTGTAACAACCCCTGCTACTCTGCACTATTCGGGCCTAAAGgtTTTGGACGTGGAGGAGCTGAAAGCCACACATTCACAAAGTAGAGCCACTCAGGTTCTCCAACCACACCAAGAAGAAGGCAACTCTGCATTCTACAACGTCCTCCATACCATACTAAACCAAAACAAACAACCAAAGAAGTTCCTTTTCGGGAACCACCATTTTGtgttattttctgtctttgtgttgtCTAGAGGAATCAGCCTTAATGCACAGCAGAGACGCTCTCTATTCCCACTAGTGGATCGGAGGGGTATACGAGAACCTCTCTGTTCCTTTACTTGTTCTTAAATTCTGATTAAACActatttttcaaaatgttttactCTCTCCTAATTCATTCATTTCTCGTGGTCTTGTACTTGAC

Function

symbol description
crip1 Predicted to enable peptide binding activity and zinc ion binding activity. Acts upstream of or within heart contraction and heart development. Predicted to be located in cytoplasm. Orthologous to human CRIP1 (cysteine rich protein 1).

NR:

description
cysteine-rich protein 1 (intestinal)

GO:

id name namespace
GO:0008630 intrinsic apoptotic signaling pathway in response to DNA damage biological_process
GO:0071493 cellular response to UV-B biological_process
GO:0071236 cellular response to antibiotic biological_process
GO:0010043 response to zinc ion biological_process
GO:0005737 cytoplasm cellular_component
GO:0003680 minor groove of adenine-thymine-rich DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0042277 peptide binding molecular_function
GO:0008301 DNA binding, bending molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036954597.1 False 806 mRNA 0.48 5 28642333 28650251
TU1842983 True 664 TUCP 0.46 5 28642288 28650064

Neighbor

gene id symbol gene type direction distance location
mta1 mta1 coding downstream 91876 28505887 ~ 28550457 (-)
tmem229b LOC106602701 coding downstream 136765 28491101 ~ 28505568 (-)
plekhh1 LOC106602716 coding downstream 373131 28205649 ~ 28269202 (-)
slc25a21 slc25a21 coding downstream 445618 27920006 ~ 28196715 (-)
LOC118941468 NA coding downstream 670906 27970410 ~ 27971427 (-)
mideasb elmsan1 coding upstream 53917 28704168 ~ 28735490 (-)
tmem62 tmem62 coding upstream 107008 28757259 ~ 28766203 (-)
LOC110497632 snap23 coding upstream 284828 28935079 ~ 28957730 (-)
LOC110497635 LOC106602575 coding upstream 358564 29008815 ~ 29090489 (-)
LOC110498568 NA coding upstream 558573 29208824 ~ 29212107 (-)
G1610119 NA non-coding downstream 3754 28638361 ~ 28638579 (-)
G1610023 NA non-coding downstream 146513 28495604 ~ 28495820 (-)
G1610018 NA non-coding downstream 153750 28488232 ~ 28488583 (-)
G1610019 NA non-coding downstream 154988 28487035 ~ 28487345 (-)
G1609638 NA non-coding downstream 175019 28467102 ~ 28467314 (-)
G1610151 NA non-coding upstream 38866 28689117 ~ 28689370 (-)
G1610159 zadh1 non-coding upstream 101331 28751582 ~ 28753333 (-)
G1610156 NA non-coding upstream 104374 28754625 ~ 28755357 (-)
G1610161 NA non-coding upstream 105313 28755564 ~ 28755801 (-)
G1610160 NA non-coding upstream 105752 28756003 ~ 28756279 (-)
nkx2.9 nkx2-8 other downstream 763517 27877963 ~ 27879920 (-)
G1608992 NA other downstream 1434979 27206230 ~ 27207354 (-)
G1608988 LOC106603498 other downstream 1440598 27195748 ~ 27201735 (-)
G1608844 LOC106603413 other downstream 1700953 26937870 ~ 26941380 (-)
G1610194 ttbk2 other upstream 139170 28789421 ~ 28790413 (-)
G1611350 NA other upstream 1236094 29886345 ~ 29886690 (-)
G1611392 NA other upstream 1297149 29947400 ~ 29955786 (-)
G1611431 LOC106602420 other upstream 1384667 30034918 ~ 30035682 (-)

Expression


Co-expression Network