jmjd7 (jmjd7)


Basic Information

Item Value
gene id jmjd7
gene name jmjd7
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 31987475 ~ 31994210 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021573927.2
CACAGATGATTtgttaacatagcaggttaggagaataaggttaaggttaggaaaagggttaggtaAAATACTACAGTTGTCAACAACTGTTGTCCAAAACACGAAAGAAACTGCCAGGGACCAATGGCGAGCATGAGATCAGGAAACGCCGATATTAACAAACTATTCTAAAGTCTTCCACCAGAAGAGGGAGACAATTTGAGTCGAATTGATGCAATCGTCTTGTAGAAGAAGTAGACGACGCATGCGCGCACAGAAGGTAAACAAATATGGAGACGCATGTGCACGTTTTTACTGTCCATTTTTTGGGGGACAAATATTGATATTACATGTTTTTCTATTAATAATCTTAATCGGGATGTATAGAAGGAGCCCCAAAATATGTCCATTTTAAAACTAAAATCGTTTAATGGCAATGTAATGGCAGAAAATAAAACGTTGGATGCAGTGAAAAAGTGTTTGAGAGACTTCCCTCTGGAGGCACGTGAGCTATATCTCAATAAAACAGTGCCGTGTCTAGAGCAGCCCCTTTCCCCACTTGAGTTCTACCGGGAATGGATTGGTCCAAATAAACCCTGCGTCATCCGGAATGCTTTCGGTCATTGGCCAGCCTTGTCCAAATGGAATCCCTCCCATCTCCgGGAAGTGGTGGGTTCAAAGGTCATCAGTGTGGCCGTGACCCCAAATGGCTATGCAGACGCAGTTAACCGGGACCGCTTTGTCATGCCTGAGGAGCGGCTGATGAccttctcctctctgctggaTGTTGTGGAGGGGAAGGTGGAGAGCAGGGGAGTGTTCTACGTCCAGAAACAGTGTTCTAACCTGACcgaggagctgccagagctgacTGGGGACGTGGAGACTCACATACCCTGGATGAGTGAAGCCCTCGGGAAGTTACCAGATGCAGTGAATTTCTGGTTAGGAGAAGCAGGCGCAGTCACGTCGATGCACAAGGACCACTATGAGAACCTGTACTGTGTCATCACTGGAGAGAAACACTTCATCCTTCTCCCGCCGTCTGACAGGCCCTTTATACCTTATGAGCACTACCAGCCTGCAgtgtacagacagagagaggatggggacttCGACGTGGTTGATGTGGCAGATTCAGACAAGGTTCCTTGGATACCATTGGACCCGTTAAAGCCAGATCTGGAGCTTTACCCTGACTACAGTCTGGCACGCCCACTCCATGTTACTGTCAAGGCCGGAGAGATGCTCTACCTGCCCTCTCTCTGGTTCCATCATGTTCGCCAGTCTCACGGTTGCATTGCAGTGAATTTCTGGTATGATATGGAGTATGACATCAAATACAACTACTTCCAGCTGGTGGAGTCGCTGGCTGGAGCTGTGGGGCCGCTTTGACATTTAAATTCATCTGATATACCAGCAAATGTCTTCATGGTTGTGcctcaaatggcaacctattcccttttatagagcactacttttgaccagggcccatagggctctagttaAAAGTAGTTccgtatatagggaatagggtgccattagggatgtaTTCTATGTAAATAAAGCGCTTAGTCTGAA

Function

symbol description
jmjd7 Predicted to enable 2-oxoglutarate-dependent dioxygenase activity. Is expressed in alar plate midbrain region; immature eye; mesoderm; and optic tectum. Orthologous to human JMJD7 (jumonji domain containing 7).

NR:

description
jmjC domain-containing protein 7

GO: NA

KEGG:

id description
K19219 JMJD7; peptidyl-lysine (3S)-dioxygenase / protease

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021573927.2 True 1560 mRNA 0.47 8 31987475 31994210

Neighbor

gene id symbol gene type direction distance location
haus2 haus2 coding downstream 164844 31814466 ~ 31822631 (-)
ccdc85ca LOC106602325 coding downstream 196667 31730827 ~ 31790808 (-)
setd3 LOC106602337 coding downstream 269868 31653662 ~ 31717607 (-)
bcl11ba LOC106601761 coding downstream 358420 31567353 ~ 31629055 (-)
si:dkey-288a3.2 LOC106601776 coding downstream 998524 30911393 ~ 30988951 (-)
fbxo34 fbxo34 coding upstream 18976 32013186 ~ 32062575 (-)
lgals3b LOC106602243 coding upstream 70288 32064498 ~ 32077555 (-)
dact1 dact1 coding upstream 195417 32189627 ~ 32205732 (-)
kiaa0586 kiaa0586 coding upstream 228287 32222497 ~ 32369182 (-)
irf2bpl LOC106602196 coding upstream 351698 32345908 ~ 32349044 (-)
G1613876 LOC106602280 non-coding downstream 7281 31979340 ~ 31980194 (-)
G1613850 NA non-coding downstream 49230 31934654 ~ 31938245 (-)
G1613804 LOC106602308 non-coding downstream 104589 31882348 ~ 31882886 (-)
G1613798 LOC106584099 non-coding downstream 124018 31861934 ~ 31863457 (-)
G1613770 NA non-coding downstream 155039 31831501 ~ 31832436 (-)
G1613880 LOC106602264 non-coding upstream 5712 31999922 ~ 32000388 (-)
G1613883 NA non-coding upstream 6964 32001174 ~ 32001504 (-)
G1613884 NA non-coding upstream 8016 32002226 ~ 32002462 (-)
G1613813 NA non-coding upstream 12232 32006442 ~ 32007227 (-)
G1613915 LOC106579309 non-coding upstream 99139 32093349 ~ 32093618 (-)
G1613722 hipl1 other downstream 180228 31719922 ~ 31807247 (-)
G1613218 NA other downstream 523579 31463121 ~ 31463896 (-)
G1611431 LOC106602420 other downstream 1951793 30034918 ~ 30035682 (-)
G1611392 NA other downstream 2031689 29947400 ~ 29955786 (-)
G1611350 NA other downstream 2100785 29886345 ~ 29886690 (-)
G1615240 NA other upstream 464320 32458530 ~ 32461579 (-)
G1615357 LOC106602003 other upstream 656716 32650926 ~ 32657769 (-)
LOC110497688 npas3 other upstream 777707 32770921 ~ 33161896 (-)
G1615793 NA other upstream 1418009 33412219 ~ 33413217 (-)

Expression


Co-expression Network