lgals3b (LOC106602243)


Basic Information

Item Value
gene id lgals3b
gene name LOC106602243
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 32064498 ~ 32077555 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036954653.1
AAACACTGTTTAAGAGTGGACCTGCGGTTGCAGTATTTGAAACATACAATTCACATTTCTCACCCTCTTTTTCAGATAAAATGAATCTGTCAGATGCTCTGGGTGGTGGACCGGGCTGTCCAGGCCAGAACAACCAGCAGGGTGGTGGGGGCGTGTGGCCTGGTGGACAACCCAACCAACCAACATGGCCAGGACAGCCTGGTGTTCAACCGGCTTGGCCTGGTCAGCAGCAACCAGGCCAGCCCACCCCCATGTGGCCTGGACAACAACCAAACCCTTCCCAACCCTCATGGCCGGGGCAACAACATGGAGGTGGAGTACAGCCCAGCCAGCCAACCTGTCCCGGACAACCAGGGGGAGGACCGCCCAGCCAGCCAACATGGCCAGGGCAGCCTAGCCAACCTACTGCTCCTCAACATCATTCACTGAAAGTGCCATATGTTCAGAACCTGCCAAACGGATGCTATGACGAGATGGTCATCACCATTATCGGGACAATTAACCACAATGCCAAAATGTTCACATTGAACCTGACCAAAGGGAATGACATTGCCATGCACATTAACCCTCGCTTTGATGACCATGGCAAGAAAATTATTGTGAGGAACAGTCTGATTGGCAATAAATGGggcaaagaggagagaggacacaacCACTTCCCCTTCACTCAGGGCCAGCCCTTTGAGATGAAAATCATGTGCACTAACAATGAGTTCAGGGTGGCAGTGAATAGCTCGCACCTCCTGGAGTTCAAACACCGCATCCGTGACCTCGACTCAATCAAACACCTGGGTATCTACAATGACGTCACCCTCACGTCTGTGGAGATCAATGACTTTATCTAGCAGGTTTGGTTccagccatagaaatagaatgactagcaTGGCCTAGCCTCAAGTTATTTATGATTCCAAAGACTTCCCTTAATTGTCTATAAACAGAAAAGTACAGTAGCTTGACTCCAGCTTTAATTAAGCCACTAGGACTGTCACATTCGGTACTAGGCCGGTCTGTtctgttaaaatatattttgataagtGAAATTCGTACATGGCCAATTCATACTTTGATCTTCAAGTAATTTGTGTAAGCTGGTAATGTATAGACTGCATGCAATAAATGTGGTGTTGGCAGATTTTTCTCCATGTAAAGACAATACAT
>XM_021573937.2
ATATGTCAGTTCCTTGTACTCTAGCATGGAGATATTCATCAGCATTGATATACTGATTTCTCCTGAGGACTGAGTTTGGAAAACACTGTTTAAGAGTGATAAAATGAATCTGTCAGATGCTCTGGGTGGTGGACCGGGCTGTCCAGGCCAGAACAACCAGCAGGGTGGTGGGGGCGTGTGGCCTGGTGGACAACCCAACCAACCAACATGGCCAGGACAGCCTGGTGTTCAACCGGCTTGGCCTGGTCAGCAGCAACCAGGCCAGCCCACCCCCATGTGGCCTGGACAACAACCAAACCCTTCCCAACCCTCATGGCCGGGGCAACAACATGGAGGTGGAGTACAGCCCAGCCAGCCAACCTGTCCCGGACAACCAGGGGGAGGACCGCCCAGCCAGCCAACATGGCCAGGGCAGCCTAGCCAACCTACTGCTCCTCAACATCATTCACTGAAAGTGCCATATGTTCAGAACCTGCCAAACGGATGCTATGACGAGATGGTCATCACCATTATCGGGACAATTAACCACAATGCCAAAATGTTCACATTGAACCTGACCAAAGGGAATGACATTGCCATGCACATTAACCCTCGCTTTGATGACCATGGCAAGAAAATTATTGTGAGGAACAGTCTGATTGGCAATAAATGGggcaaagaggagagaggacacaacCACTTCCCCTTCACTCAGGGCCAGCCCTTTGAGATGAAAATCATGTGCACTAACAATGAGTTCAGGGTGGCAGTGAATAGCTCGCACCTCCTGGAGTTCAAACACCGCATCCGTGACCTCGACTCAATCAAACACCTGGGTATCTACAATGACGTCACCCTCACGTCTGTGGAGATCAATGACTTTATCTAGCAGGTTTGGTTccagccatagaaatagaatgactagcaTGGCCTAGCCTCAAGTTATTTATGATTCCAAAGACTTCCCTTAATTGTCTATAAACAGAAAAGTACAGTAGCTTGACTCCAGCTTTAATTAAGCCACTAGGACTGTCACATTCGGTACTAGGCCGGTCTGTtctgttaaaatatattttgataagtGAAATTCGTACATGGCCAATTCATACTTTGATCTTCAAGTAATTTGTGTAAGCTGGTAATGTATAGACTGCATGCAATAAATGTGGTGTTGGCAGATTTTTCTCCATGTAAAGACAATACAT
>XM_021573936.2
GAATACGCCCTGACACGCAGCCTCTCCAATTCTAGTATATGTCTGCCATATGAAGGGAGCAGCGTGGTGACATCAAAGCACAACAGGACCTGCGGTTGCAGTATTTGAAACATACAATTCACATTTCTCACCCTCTTTTTCAGATAAAATGAATCTGTCAGATGCTCTGGGTGGTGGACCGGGCTGTCCAGGCCAGAACAACCAGCAGGGTGGTGGGGGCGTGTGGCCTGGTGGACAACCCAACCAACCAACATGGCCAGGACAGCCTGGTGTTCAACCGGCTTGGCCTGGTCAGCAGCAACCAGGCCAGCCCACCCCCATGTGGCCTGGACAACAACCAAACCCTTCCCAACCCTCATGGCCGGGGCAACAACATGGAGGTGGAGTACAGCCCAGCCAGCCAACCTGTCCCGGACAACCAGGGGGAGGACCGCCCAGCCAGCCAACATGGCCAGGGCAGCCTAGCCAACCTACTGCTCCTCAACATCATTCACTGAAAGTGCCATATGTTCAGAACCTGCCAAACGGATGCTATGACGAGATGGTCATCACCATTATCGGGACAATTAACCACAATGCCAAAATGTTCACATTGAACCTGACCAAAGGGAATGACATTGCCATGCACATTAACCCTCGCTTTGATGACCATGGCAAGAAAATTATTGTGAGGAACAGTCTGATTGGCAATAAATGGggcaaagaggagagaggacacaacCACTTCCCCTTCACTCAGGGCCAGCCCTTTGAGATGAAAATCATGTGCACTAACAATGAGTTCAGGGTGGCAGTGAATAGCTCGCACCTCCTGGAGTTCAAACACCGCATCCGTGACCTCGACTCAATCAAACACCTGGGTATCTACAATGACGTCACCCTCACGTCTGTGGAGATCAATGACTTTATCTAGCAGGTTTGGTTccagccatagaaatagaatgactagcaTGGCCTAGCCTCAAGTTATTTATGATTCCAAAGACTTCCCTTAATTGTCTATAAACAGAAAAGTACAGTAGCTTGACTCCAGCTTTAATTAAGCCACTAGGACTGTCACATTCGGTACTAGGCCGGTCTGTtctgttaaaatatattttgataagtGAAATTCGTACATGGCCAATTCATACTTTGATCTTCAAGTAATTTGTGTAAGCTGGTAATGTATAGACTGCATGCAATAAATGTGGTGTTGGCAGATTTTTCTCCATGTAAAGACAATACAT
>XM_021573935.2
CCTTGGGGGAAAACCTGTATGAATACGCCCTGACACGCAGCCTCTCCAATTCTAGTATATGTCTGCCATATGAAGGGAGCAGCGTGGTGACATCAAAGCACAACAGATAAAATGAATCTGTCAGATGCTCTGGGTGGTGGACCGGGCTGTCCAGGCCAGAACAACCAGCAGGGTGGTGGGGGCGTGTGGCCTGGTGGACAACCCAACCAACCAACATGGCCAGGACAGCCTGGTGTTCAACCGGCTTGGCCTGGTCAGCAGCAACCAGGCCAGCCCACCCCCATGTGGCCTGGACAACAACCAAACCCTTCCCAACCCTCATGGCCGGGGCAACAACATGGAGGTGGAGTACAGCCCAGCCAGCCAACCTGTCCCGGACAACCAGGGGGAGGACCGCCCAGCCAGCCAACATGGCCAGGGCAGCCTAGCCAACCTACTGCTCCTCAACATCATTCACTGAAAGTGCCATATGTTCAGAACCTGCCAAACGGATGCTATGACGAGATGGTCATCACCATTATCGGGACAATTAACCACAATGCCAAAATGTTCACATTGAACCTGACCAAAGGGAATGACATTGCCATGCACATTAACCCTCGCTTTGATGACCATGGCAAGAAAATTATTGTGAGGAACAGTCTGATTGGCAATAAATGGggcaaagaggagagaggacacaacCACTTCCCCTTCACTCAGGGCCAGCCCTTTGAGATGAAAATCATGTGCACTAACAATGAGTTCAGGGTGGCAGTGAATAGCTCGCACCTCCTGGAGTTCAAACACCGCATCCGTGACCTCGACTCAATCAAACACCTGGGTATCTACAATGACGTCACCCTCACGTCTGTGGAGATCAATGACTTTATCTAGCAGGTTTGGTTccagccatagaaatagaatgactagcaTGGCCTAGCCTCAAGTTATTTATGATTCCAAAGACTTCCCTTAATTGTCTATAAACAGAAAAGTACAGTAGCTTGACTCCAGCTTTAATTAAGCCACTAGGACTGTCACATTCGGTACTAGGCCGGTCTGTtctgttaaaatatattttgataagtGAAATTCGTACATGGCCAATTCATACTTTGATCTTCAAGTAATTTGTGTAAGCTGGTAATGTATAGACTGCATGCAATAAATGTGGTGTTGGCAGATTTTTCTCCATGTAAAGACAATACAT
>XM_021573933.2
CACTATgtgtagactatattgacctgtggaaTAGTAAGCGCGCTGAAAAGCGTAGTGCACAAGGGAAGAACCAAAACACCTTGATAGGGAACGCGCATGCAAACAGATGAGGACATTATTGTAAAACCTGCAAAATGGGATAAAATGAATCTGTCAGATGCTCTGGGTGGTGGACCGGGCTGTCCAGGCCAGAACAACCAGCAGGGTGGTGGGGGCGTGTGGCCTGGTGGACAACCCAACCAACCAACATGGCCAGGACAGCCTGGTGTTCAACCGGCTTGGCCTGGTCAGCAGCAACCAGGCCAGCCCACCCCCATGTGGCCTGGACAACAACCAAACCCTTCCCAACCCTCATGGCCGGGGCAACAACATGGAGGTGGAGTACAGCCCAGCCAGCCAACCTGTCCCGGACAACCAGGGGGAGGACCGCCCAGCCAGCCAACATGGCCAGGGCAGCCTAGCCAACCTACTGCTCCTCAACATCATTCACTGAAAGTGCCATATGTTCAGAACCTGCCAAACGGATGCTATGACGAGATGGTCATCACCATTATCGGGACAATTAACCACAATGCCAAAATGTTCACATTGAACCTGACCAAAGGGAATGACATTGCCATGCACATTAACCCTCGCTTTGATGACCATGGCAAGAAAATTATTGTGAGGAACAGTCTGATTGGCAATAAATGGggcaaagaggagagaggacacaacCACTTCCCCTTCACTCAGGGCCAGCCCTTTGAGATGAAAATCATGTGCACTAACAATGAGTTCAGGGTGGCAGTGAATAGCTCGCACCTCCTGGAGTTCAAACACCGCATCCGTGACCTCGACTCAATCAAACACCTGGGTATCTACAATGACGTCACCCTCACGTCTGTGGAGATCAATGACTTTATCTAGCAGGTTTGGTTccagccatagaaatagaatgactagcaTGGCCTAGCCTCAAGTTATTTATGATTCCAAAGACTTCCCTTAATTGTCTATAAACAGAAAAGTACAGTAGCTTGACTCCAGCTTTAATTAAGCCACTAGGACTGTCACATTCGGTACTAGGCCGGTCTGTtctgttaaaatatattttgataagtGAAATTCGTACATGGCCAATTCATACTTTGATCTTCAAGTAATTTGTGTAAGCTGGTAATGTATAGACTGCATGCAATAAATGTGGTGTTGGCAGATTTTTCTCCATGTAAAGACAATACAT

Function

NR:

description
galectin-5-like isoform X1

GO:

id name namespace
GO:0030246 carbohydrate binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036954653.1 False 1161 mRNA 0.48 6 32064498 32068821
XM_021573937.2 False 1184 mRNA 0.48 6 32064498 32068901
XM_021573936.2 False 1229 mRNA 0.48 6 32064498 32069010
XM_021573935.2 False 1192 mRNA 0.49 6 32064498 32069030
XM_021573933.2 True 1225 mRNA 0.48 6 32064498 32077555

Neighbor

gene id symbol gene type direction distance location
fbxo34 fbxo34 coding downstream 1923 32013186 ~ 32062575 (-)
jmjd7 jmjd7 coding downstream 70288 31987475 ~ 31994210 (-)
haus2 haus2 coding downstream 241867 31814466 ~ 31822631 (-)
ccdc85ca LOC106602325 coding downstream 273690 31730827 ~ 31790808 (-)
setd3 LOC106602337 coding downstream 346891 31653662 ~ 31717607 (-)
dact1 dact1 coding upstream 112072 32189627 ~ 32205732 (-)
kiaa0586 kiaa0586 coding upstream 144942 32222497 ~ 32369182 (-)
irf2bpl LOC106602196 coding upstream 268353 32345908 ~ 32349044 (-)
arid4a arid4a coding upstream 298711 32376266 ~ 32398733 (-)
LOC110497673 psma3 coding upstream 323360 32400915 ~ 32414594 (-)
G1613813 NA non-coding downstream 57271 32006442 ~ 32007227 (-)
G1613884 NA non-coding downstream 62036 32002226 ~ 32002462 (-)
G1613883 NA non-coding downstream 62994 32001174 ~ 32001504 (-)
G1613880 LOC106602264 non-coding downstream 64110 31999922 ~ 32000388 (-)
G1613876 LOC106602280 non-coding downstream 84304 31979340 ~ 31980194 (-)
G1613915 LOC106579309 non-coding upstream 15794 32093349 ~ 32093618 (-)
G1613919 NA non-coding upstream 20836 32098391 ~ 32098686 (-)
G1613936 NA non-coding upstream 53551 32131106 ~ 32131311 (-)
G1615089 NA non-coding upstream 103776 32181331 ~ 32181607 (-)
G1615091 NA non-coding upstream 105029 32182584 ~ 32182784 (-)
G1613722 hipl1 other downstream 257251 31719922 ~ 31807247 (-)
G1613218 NA other downstream 600602 31463121 ~ 31463896 (-)
G1611431 LOC106602420 other downstream 2028816 30034918 ~ 30035682 (-)
G1611392 NA other downstream 2108712 29947400 ~ 29955786 (-)
G1615240 NA other upstream 380975 32458530 ~ 32461579 (-)
G1615357 LOC106602003 other upstream 573371 32650926 ~ 32657769 (-)
LOC110497688 npas3 other upstream 694362 32770921 ~ 33161896 (-)
G1615793 NA other upstream 1334664 33412219 ~ 33413217 (-)
G1615810 hectd1 other upstream 1401038 33478593 ~ 33479436 (-)

Expression


Co-expression Network