arid4a (arid4a)


Basic Information

Item Value
gene id arid4a
gene name arid4a
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 32376266 ~ 32398733 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021573940.2
ATGGCAACTTTTCCCTCAAAGAGACGATTTCATCTCTACCAACCATCAATACAGATTAGTTATGTCCTATAGCATTTGAAGCATGTGTTGACCAATCACATTTCTGAGATTTGACCACGACTGTCATGGCAGCCAATCTGATTTCGAGAAACACATCTTCGGATCAAGCTTATTCTTCGTGTATTGCTTTGCAACTCTAGCAAGTGGTGAGCAGTCGGATCGTTGCACAATCAAAACCAATCGAGCTGGACTCCCTCAAATAGTCTACGATGAAGGCAGCAAACGAGCCTGCCTATCTGACCGTGGGGACTGAGGTCAGTGCCAAATACAGAGGTGCCTTCTGTGAGGCAAAAATCAAGACTGTTAAACGGATGGTGAAGGTTAAGGTGATGGTCAAAGGAGACACCACCTCGCAAGTTGTTCAAGATGATCAAGTGAAAGGACCGTTAAGGGTGGGCTCCACAGTGGAGGTGAAGAGTGCAGAGGGGATCTGCAGTGAGGCAACCATCAACAAACTCACAGACGCCAGTTGGTACACAGTGGTGTTTGACGATGGGGATGAGAAGACACTCCGCAGGACGTCACTGTGTCTGAAGGGAGAAAGACATTTTGCTGAGAGCGAGACATTGGACCAACTGCCCCTAACCAACCCAGAGCACTTTGGCACCCCCGTCATTGGGAAGAAGGGAAACCGCGGAGGGAGGAGGTCATCTCAGGCTCATGCGGACGATGACAAGGAGTCGTCTTCCAGTGAAGATGACAATGAGGACAGGAGGAGGCTAAACGATGACCTGATGggtaaagtggccagtgttcagACTGGGACAGAGCGGACATCCTGGTACCTGGCCCTGGTGATATCACCCAGCTGCAATGATGACTTGACAGTCAAGAAGGACCAATGTTTAGTCAGATCATTTGCAGACTCCAAATTtCACACTGTGGCAAGAAAGGAGATCCATGAAGTGAACATGGACAGCATCTCTAAAGCTGAGTTCTCACCGAGGAAAGGGTTGGATGGGGCAGTGCATTTCCTCAAGACCAAGGTAGTTCCTGACAGTTGGAAGATGGACATGAGTGAGATTTTAGAATCCTCCAGCAGTGACGAGGAGGACACAGAAGGAAAGGAGAGTGAcgacgatgatgaggaggaggaggaggaggaggagaaggaggaggaggaggaggaggagaaggaagatgcCAATGATGAGCCTGAGGATGAGGCGGACCCAGAGGAGAGGGATCACTTCCTGCAGCAGCTGTATAAGTTCATGGAGGATCGAGGGACGCCAATTAACAAGCCTCCTGTGCTCGGCTACAAGGATCTGAACCTCTTCAAGCTCTTCAGGCTAGTCTACCACCAGGGGGGCTGTGACAAAATTGAAAGTGGATCTGTGTGGAAACAAATCTACATAGACCTTGGCATTCCCGTCCTAAACTCTGCTGCCTCCTACAATGTGAAGACTGCCTATAGAAAGTACCTGTATGGCTTTGAGGAGTACTGTCGCTCAGCCTGCATCGTCTTCAGGACCATCCACCACAGCGAGGATCCGCCAGCTTCCCAGTCCCAGACAGAAGAGAAGGCCGCCCAAATCCTTGAGGTGAAGGAGTGCCAGGGCCCAACACCATCCATCAAAACTGAGTCTGTTGCGGCCATGGAGGACAAGCCTGCCCAGGAGGAGGCGGCAGAGTCGGGGAGCGAGAGCGACAAAGATGTCTCTTCTCCCAGGGGGAGGAGACGGTGCACTGTGACCCCGGTCAAAGCTGAGGTGAAGGAGCCCTCAAAGCTGGAGAAGATCAAAGAGAAGGAGGAGCAGAGTGGTGTGGGGGAGACCAGCGGAGAGGAGACTGGAGGTCCGAGAGACGGCACCAGGTCAGATGGAGGGGACACCCCGGGGAACAGACGCAGCCGACGCCTGGAGGAGTCCGATAAAGAGTCTGAGGACGAGGAGGAGTTGGAGGATGAGGAAGACAGCGAGAGGAGAGTCGGAGAAAGaggtgaGGACGAAGACTCTGAAGACTCCGTAACAGGGACTAAGGTGAAGGTAAAGTACGGTCGAGGGAAGACCCAAAAGATCTACGAGGCCAACATCAAGAAGGCAGAGAACGATGATGGAGGAGATGTCCTCTACCTAGTTCACTACTACGGCTGGAACGTCAGGTATGATGAGTGGGTCAAAGCAGACCGGATAATCTGGCCTGTCGACAAGGGCGGAacaaaaaagaaacagaaaaagAAAGTGAAGAATAAAGAGGAAGGCGAGAAGGAGGATGACAAGCAGGGGAAGCTGTGTGGCTTGAAGCGAGGTCGCCCTCTTCTTAGAACCACCTCCGCCAGCGCCAACCGCAGCGTCTCCAAGACCCCCAGCAGTGAGGGGCGctccagcagcaagagcaaaTCTGATGTATCAGCCCTGCCCAACGGAGAGGGTACCCCTCGCCGACGCACAAGAACAACCTCTGGGATGTATGACTCGGACAGGGATTCTACCTCCAATGAAGAATCGGGGAACTCGTCAGAGGACAGTGAGTCAGAGGATTCTCCTGAGAAGAAGCCTGCGTGGGCGGAGAGGACGGACCCCGCCACAGCCCgtaagcaggaggaggaggaggaccggagggtggagagaggaagagcagaGGCAGCAGCCGCCGCTGCAGCCCAGGTCGTAGCCCAGGATCAGCCCCCCAGCAGCCCTCAGGAGAAGGAGCAGCAGGAGGACACGCTCCCTGAGAGGAGGGAGCCGGAGAAGGCTGCGGAGCAGCCCCAGGTGCCCCCCATGACCCCTGAACCCGACAGAACTAAGGAGGAGGACCCCCCCACCCCGAAATTCCCCAGGTCTAAAGCAGCACGTAGAAGTAACGTTTGCGAGCCAGAGAGGAACCCCAACAACGACACTGGCTCTGAAACGCCCACCAAAACCACCATCACCACTCCCAACAACACTGAGACCGAGTCGTCTCCCTGCCCGCGTACCCTGAACAGGCAGGATGAGCCCATGGTGGTCCTTCATTGTCTCCCAGCTGAGCACATTCCCAGCATCCCTGACCTTCCCACCATGGACTCTGACACAGACTCAGCTACGGAGGAGGAGATCTGCAGGGAGGAGCGAGGTGTGGCCAAGCGTAAAGCCACTGAGCAGAGGACGCCGGACAAGAAGGTGCGTCTGGACAGGAGGGAAGAGACGACCAAGATGGCGTCGCCAGTCAGGCGGCCCGCTGACTCGCCAGCCAGGCGGCCCGCTGACTCGCCAGAGTGGAGGCTGGAGGCGGGGGGACAGAGAGGCGAGGAGCGCCTGACGCTAGCAAAGGGTAAAACAGAGATGCCTGCCCTCACTCCGGAGGTGCAGTGTCAAAGtctaggagagggaggtgtagcaGGAGGTCGACCCAGGTTGGAGCAGCTAGCCTCGGGGGTCGAGGAGGAGGTGATGCCCCAGATCGGCCCTGAGGCGCTGGTCTGTCACGAAGTGGATCTGGACGACCTGGATGAGAAGGACAAGACCTTAGCAGAAGACCTCCTAATGATGATGAGTCAAGGGAAGGTCCATGCTCCCCCTCCGTCCAATGCCTCCTCCCACCAGACCCACAACAACCCTCCTCTGTCCTCGGGGGGCGCTGCTCCTCCACGGGTCTTCTCCCCCACCTCTGCCCCCAGCCCTGATGAGTCTCACAGCACCAAGAGTGAGAGCGACGTCCCCATCGAGGTGGACAGTGTAGCCGGGGAGTCTCAGGAGGGGCTTGGTGATAACGAGTCGGCCAACTCAAACTGTTTTGAAGCTAGCACCAGCTCCAGCAACTCCAGCATGTCACTACAGGAGAGGGACACCAAGGACAGAGGTCAGAAAAGGTTGATGGACTGCCATTTGAGTTCTTCTGCAAAGAAGCAGAAGCGAAACCAGAAACGGCCAAGCACAACATCCAAAATTGATAAGAACGGAGCAGGGCACAGCAGTGACAGTGAGGACCTGGCTGTCATGGACACCTCTAGTAAGCTGACTCCAGTGAAACACTCCATGTCTAAAGGAACCCAGAAGCTGGTATCTCCCAACAGTAAGGAGCTAGAGAAATATAAGCACAAGGACAAGCagtcctccttcccctcccctcgcACGTACAAGTGGACCTTCCAGCTCAATGAACTGGACAGCATGACAAGTGCTGAGAGGATATCCTTCTTACAAGACAAACTACAGGATATAAGGAAGTATTACATGTCACTCAAGTCTGAAGTGGCCTCCATAGACAGGAGGCGGAAGAGGTTAAAGAAGAAGGAAAGAGAAGtgTCCCACACCACAGCGTCAACGTCGTCCGGCTCGTCAGACACTGGGATGAGCCCCTCCTCTGCTTCTCCCACTCAGAACACTGTGGCTGTCGAGTGTAGGTGATGACACGCCTCCTCCCCCATGGCGACCACCTTGCCCATCTCTGCCTGCCAGCCCAGCATCCTGCTGCCTCCCTGGAGACACAGGgtacatctgaaatggcaccctattccctatatagggaatatatttTGGCCAGAAGCCCATGTCAAATGACCagagaccctggtcaaaagtagtctacTATATATGGCATaggggtggcatttgggacgcacacacgTACTGACACATAGGAGCAAGCGGCCTAAAGCACTCGACTGCCCCCCTCAGTCTCCTTTCACCCCTTTATCCTTTCTACCGTATCCCGTCCACCACTCTCACTTCCTGCCTCGTAGTCATTTTAGTCCACCTATCACAGTCGTCAGGAAATGGATTCCATGTGAGTTGAATGTAAAGGAAACTACAAACCCAAGATACTCCTAGCCAAACCCCGTCAGACTCTCCATCCTTGGAACAGACCATGGCACTTTTCTCCTCCCGCTCTGTCAGAACCACAGAAACATATAACCTCCTCTGGTTCCCCAAACGGGACCAATCTGGATGCAGTAATGAATCAATGATGTCCCAGACAAATGCAATGTATGTAACCTACAATGTAAAGGGTTCCTACCTATGTTAATAATGGTCACTTAACCAGCTGGACATGGTTTGCAAGAAGGTAAATTATGTTTGCTTGCACCATCAGAACTGCCAAAGTACTAGTGTTACAGCAGAGTGCCCTATTTTGGAAAAATTTGAAATTCAATTGTGAAAGGGAATGTAGTTTACTGAAAACTGCAGCTGTTGTCTTCCACTATTGGAGTGTCAGCACAGATTAATTATGCAAACTATTTTTTAGTTCTTTTTAAGAaaaggaatttaaaaaaataaaaggtttACAGTGGAACAAGAGAATGATTTCAGTGGACTAATTTCCTTTGCGAGTGTATTTTGCCGTTTTATATGTAATTGCAGAGTTTTTATTTTAGTATGGAAAATTTCAAAACTATATATCACAGCAGTGAAGTTATTTAATGAAAGATTTCTCGAACTGAAATTGTGTAAAATAAAGTCATGGTTTGctttgttaaatatatttattctgTTAGTGGAGACTTTTGTATTTTTTACAATATAGAGACATGAACCTTCCACAGTTTGGACAATGGGAAAGTATATTGAAATAATGTAATGTGCTCATCTAAAAGCAGACTGTGTTTCAATTGGGGAGCTACTATGCAGTAgatactgtgtacaaaacattaggaacaccttcctaatgttgagttgcacccccctttgcccgggaaactgttgagcgtgaaaaacccagcagcattgcagttcttgacacactaccataccccgttcaaaggcacttaactcttcttgtcttgcccattcaccctcaatggtgcacacacacaatccatgtctctaatttaaggcttaaaaatccttatttaaaaACCTCTCAATTGAAGTGatatcaataaggaatcatagcattcatctggtcagtctgtcatggaaagagcaggtgttcctaatgttttgtacactgagtTTGTTTCCCCCCATTTTCAATAGAGCCCACTACTTTCCCTAGATGTTTTTTGGGGAACACCATCATTTGATGGCCTTCACTTTTTCACTTTGTTTCTTGGtacttgtattttattttcaacatGAGTTCTGACCAATTAAAAGTTGCATAAGAAGCATGTATGTTAAGCCCAGGGGTTTCCTATGATTTGTTTCTTTTGTACATATTGTCCAAAACCATGtatttgaaaaatacattttacaaactgTAAAGGATGATTTATTATTTTTaacctcatctttgtaccagtatattaaaacctttatttttctGTCAAGTTGGTAGAAATGTTAGCACACAGTGTATATATTGAACCCCGTAGAAGAGAATGGAAGCATtcagaacattttaaaatgtttgacTTGATTTCATTGTGAAAAAAATGTACTTCTTAAAATCGAAGTTGATCTAGGGATTCCTAGATGAAGGTATTATGATTCCCTGAGCAAAGCCATTGTATCTTTGTAAAATAAGCAGAGCTCTCCATTTCTAATAAAAGTGTTTAAATATT

Function

symbol description
arid4a Predicted to enable transcription cis-regulatory region binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ARID4A (AT-rich interaction domain 4A).

NR:

description
AT-rich interactive domain-containing protein 4A

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021573940.2 True 6487 mRNA 0.50 24 32376266 32398733

Neighbor

gene id symbol gene type direction distance location
kiaa0586 kiaa0586 coding downstream 7084 32222497 ~ 32369182 (-)
irf2bpl LOC106602196 coding downstream 27222 32345908 ~ 32349044 (-)
dact1 dact1 coding downstream 170534 32189627 ~ 32205732 (-)
lgals3b LOC106602243 coding downstream 298711 32064498 ~ 32077555 (-)
fbxo34 fbxo34 coding downstream 313691 32013186 ~ 32062575 (-)
LOC110497673 psma3 coding upstream 2182 32400915 ~ 32414594 (-)
LOC110497675 foxa1 coding upstream 104206 32502939 ~ 32506011 (-)
clec14a NA coding upstream 143933 32542666 ~ 32545053 (-)
sec23a sec23a coding upstream 192739 32591472 ~ 32618035 (-)
srp54 LOC106602043 coding upstream 220126 32618859 ~ 32628054 (-)
G1615197 NA non-coding downstream 12039 32363913 ~ 32364227 (-)
G1615196 NA non-coding downstream 13446 32362526 ~ 32362820 (-)
G1615195 NA non-coding downstream 13742 32362289 ~ 32362524 (-)
G1615194 NA non-coding downstream 14112 32361934 ~ 32362154 (-)
G1615191 NA non-coding downstream 17625 32358318 ~ 32358641 (-)
G1615242 NA non-coding upstream 66432 32465165 ~ 32465640 (-)
G1615287 LOC100194703 non-coding upstream 125997 32524730 ~ 32524955 (-)
G1615289 NA non-coding upstream 126876 32525609 ~ 32525835 (-)
G1615290 NA non-coding upstream 127136 32525869 ~ 32526077 (-)
G1615291 NA non-coding upstream 127379 32526112 ~ 32526341 (-)
G1613722 hipl1 other downstream 569019 31719922 ~ 31807247 (-)
G1613218 NA other downstream 912370 31463121 ~ 31463896 (-)
G1611431 LOC106602420 other downstream 2340584 30034918 ~ 30035682 (-)
G1611392 NA other downstream 2420480 29947400 ~ 29955786 (-)
G1615240 NA other upstream 59797 32458530 ~ 32461579 (-)
G1615357 LOC106602003 other upstream 252193 32650926 ~ 32657769 (-)
LOC110497688 npas3 other upstream 373184 32770921 ~ 33161896 (-)
G1615793 NA other upstream 1013486 33412219 ~ 33413217 (-)
G1615810 hectd1 other upstream 1079860 33478593 ~ 33479436 (-)

Expression


Co-expression Network