LOC110497673 (psma3)


Basic Information

Item Value
gene id LOC110497673
gene name psma3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 32400915 ~ 32414594 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021573949.2
AGGAGGTGGCAGTATGTTTGCGTGTTCAGTGCGGCTGCTGTTGTACGTAAAGGCATTTTCTTGTTGGTTGGTGAATGACTGGGATGTGCTGAAACACATCAGACGGAGTTGTTATAAAGGAGTTTTTAACACAATGAGTTCAATAGGAACTGGGTATGACTTGTCTGCCTCCACCTTTTCACCTGATGGAAGGGTATTCCAGGTGGAATATGCCATGAAGGCAGTAGAAAACAGCAGCACAGCAATTGGGATCCGATGCAAGGATGGGGTTGTGTTCGGTGTTGAGAAATTGATTCTCTCCAAACTTTATGAACAAGGCTCAAACAAGCGCATCTTCAATGTTGACCGTCACGTAGGAATGGCAGTGGCTGGACTACTGGCTGATGCTCGATCCCTGTCTGAGGTGGCCAGAGAGGAGGCCTCCAACTTCAGATCCAACTATGGACACAACATCCCACTGaagTATCTCTCCGAGAGAGTGGCCATGTACGTTCATGCCTATACACTATACAGTGCCGTGCGGCCGTTTGGATGCAGCTTCATCTTGGGCTCTTACGATCAAGATGATGGTCCTCAGCTGTACATGGTTGATCCCTCTGGAATCTCATTTGGTTACTGGGGATGTGCTATTGGAAAAGCCAAGCAAGCCGCCAAGACAGAAATTGAAAAGCTTCAGATGAAAGACATGACCTGCAGGGAGTTGGTAAAGGAGGTGGCCAAAATAATCTACATTGTACACGATGAAGTGAAAGACAAAGCGTTCGAGTTGGAACTCAGCTGGGTTGGAGAAGTGACAAATGGAAAGCACGAGCTGGTTCCTAAAGACATCAGGGTGGAGGCAGAGAAGTATGCTAAGGATtctttggaggaggaggatgactcTGAAGAAGACAACATGTAAATTCAATTCTGCGGTTTCTTCACTTGTCACACACCTACTGACAGGACAGCTCTACAAGAAACAGACGGAAATTATTTTGTATGTTTTGTAGTTTAATGGACCATTCATGTCATTTCTTTCCCATTTGGTTTGACGGATTACACAGCTTTGAAATAAAAGTGGATGAGCACTGTTTATACTAAAAGCAACTTTGACAATTAAAAGAAAAAGCTAAATACGGTCAA

Function

symbol description
psma3 Predicted to be involved in proteasomal protein catabolic process. Predicted to act upstream of or within ubiquitin-dependent protein catabolic process. Predicted to be located in cytoplasm. Predicted to be part of proteasome core complex, alpha-subunit complex. Predicted to be active in nucleus and synapse. Orthologous to human PSMA3 (proteasome 20S subunit alpha 3).

NR:

description
proteasome subunit alpha type-3

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0019773 proteasome core complex, alpha-subunit complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004298 threonine-type endopeptidase activity molecular_function

KEGG:

id description
K02727 PSMA3; 20S proteasome subunit alpha 7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021573949.2 True 1125 mRNA 0.45 10 32400915 32414594

Neighbor

gene id symbol gene type direction distance location
arid4a arid4a coding downstream 2182 32376266 ~ 32398733 (-)
kiaa0586 kiaa0586 coding downstream 31733 32222497 ~ 32369182 (-)
irf2bpl LOC106602196 coding downstream 51871 32345908 ~ 32349044 (-)
dact1 dact1 coding downstream 195183 32189627 ~ 32205732 (-)
lgals3b LOC106602243 coding downstream 323360 32064498 ~ 32077555 (-)
LOC110497675 foxa1 coding upstream 88345 32502939 ~ 32506011 (-)
clec14a NA coding upstream 128072 32542666 ~ 32545053 (-)
sec23a sec23a coding upstream 176878 32591472 ~ 32618035 (-)
srp54 LOC106602043 coding upstream 204265 32618859 ~ 32628054 (-)
LOC110497688 npas3 coding upstream 356327 32770921 ~ 33161896 (-)
G1615197 NA non-coding downstream 36688 32363913 ~ 32364227 (-)
G1615196 NA non-coding downstream 38095 32362526 ~ 32362820 (-)
G1615195 NA non-coding downstream 38391 32362289 ~ 32362524 (-)
G1615194 NA non-coding downstream 38761 32361934 ~ 32362154 (-)
G1615191 NA non-coding downstream 42274 32358318 ~ 32358641 (-)
G1615242 NA non-coding upstream 50571 32465165 ~ 32465640 (-)
G1615287 LOC100194703 non-coding upstream 110136 32524730 ~ 32524955 (-)
G1615289 NA non-coding upstream 111015 32525609 ~ 32525835 (-)
G1615290 NA non-coding upstream 111275 32525869 ~ 32526077 (-)
G1615291 NA non-coding upstream 111518 32526112 ~ 32526341 (-)
fbxo34 fbxo34 other downstream 338421 32013186 ~ 32062575 (-)
G1613722 hipl1 other downstream 593668 31719922 ~ 31807247 (-)
G1613218 NA other downstream 937019 31463121 ~ 31463896 (-)
G1611431 LOC106602420 other downstream 2365233 30034918 ~ 30035682 (-)
G1611392 NA other downstream 2445129 29947400 ~ 29955786 (-)
G1615240 NA other upstream 43936 32458530 ~ 32461579 (-)
G1615357 LOC106602003 other upstream 236332 32650926 ~ 32657769 (-)
G1615793 NA other upstream 997625 33412219 ~ 33413217 (-)
G1615810 hectd1 other upstream 1063999 33478593 ~ 33479436 (-)

Expression


Co-expression Network