LOC110497675 (foxa1)


Basic Information

Item Value
gene id LOC110497675
gene name foxa1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 32502939 ~ 32506011 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021573951.2
GGAAGATCTAAACTCACAGGTCACACTGCATTCAACATCTATCTCCTCACTTCTTTACTCTAACCCTCCTGCAACATCCCACCAGTTACAACGCACCTTTTCCTAGGATACATTTCTCACAAACTCCAGTCTGAGGAACTGCATGTTTACGATTTGTGGATATCAACCATAATGTTGGGTACAGTGAAAATGGAAGGTCACGAAACGCCAGATTGGAGCAGTTATTACAATGACGCACAAGAGGTATATTCGCCCATGGTGAACAACGGCATGAATGCAGGACTGAGTTCCATGAACAATATGAACAGTTACATGAGTATGTCTACTAATGGAAATATGACCTCAGGTTCTTTCAATATGTCTTACGCCAACCCCGGCCTGGGAGCCGGACTAAGCCCCGGGACAATGACAGGGATGCCCCCGAGCGCGTCCAGTGCGATGAACGGAATGGGTGGAGGGGTACCGTTAATGGGCACTGCCCTTAGCCCCTCGAACATGGGCGCGATGTCGGCTCAGCAGGCTTCCATGAACGCTATGAATCCATACGCGAGCATGAGCCCTACTATGAGCCCAATGTCCTATACTCAGCCCAACCTGAACCGAGCAAGGGACAACAAGTCGTTCAGGAGAAGCTACCCGCACGCAAAGCCTCCGTATTCATACATATCCCTTATAACCATGGCCATTCAGCAAGCACCAAGCAAGATGCTCACGCTTAGCGAAATCTATCAGTGGATAATGGACCTATTTCCATACTACAGACAGAACCAACAGAGGTGGCAGAACTCCATTCGCCATTCCTTGTCTTTTAATGATTGCTTCATCAAAGTGTCTAGGTCACCGGATAAGCCAGGCAAAGGTTCGTACTGGGCCCTGCACCCAGATTCAGGAAATATGTTCGAGAACGGTTGTTACCTACGCAGACAAAAGCGCTTTAAATGCGAAAATAGAAAGATATCTTCAAGTAAAGGGGACGGAAGGAAAGACCAGTCCGGTTCTGGGTCGCCTTCGAGCGAGAACACCAACAGCAAGACTGGGAATGTGGACTCCAACTCCCTCTCCAACCAGTCCTCCAGCCCTCACAGCATGGACCACAGGAGCAGTGGCAGCGGCTCTGAACTAAAGAGCAGCGGGCCGCCTCTCCACCCCGTGGCCAGCTCGGCCAcgtccctgtcctctctccctttacctccGCACTCGATGGCGCACGAGTCCCATCTGCACCTAAAAGGGGATCCCCATTACTCATTCAACCACCCGTTTTCAATAAATAATTTAATGTCATCCTCAGAGCAACAGCACAAACTGGATTTGAAAGCCTACGAGCAAGCTTTGCAATACTCTTCCTACGGCTCAAGTATGTCTTCCAGTCTACCCCTCGGCAGCGCGTCCATGGCTGGCAGAGCCATGGACCCATCCGCAATAGAGGCGTCATACTATCAAGGTGTGTATTCCAGACCAGTCCTCAACACTTCTTAGTATCTTCTCATTTTTAGAGTGCTCGATAAAAGGATGACAGAAAACATTGATCATATTTTTTTGCATGCACCTGGTGCATAAGGACTGTTACTTTAATGTATAAGAATGTGTATGAGTAAAATACAATAGGCCTATACTGTAAAGTGTTACCATTGAATGATTGTATATCCAGTCGTAAATCATTGCTAGTGTATTTAAAACAATTTTGAGCTTGCAAAATAATGTTGTATTCCCCAAACTTGTAGTACCCACGATgaatatgtccatgtgtgttacTATGTGCATGAATGAAGGTCAATAAGGTCTCGTGAACGCGTGAGACAGGTGAAGCGACAAACACCCGTCTGTTCCAGATAACTTACTTTTTAAATGGATGTTGTCATTTTACGCATTGCTTTGGTTCATTTGCTAAATATCTGACAAACATATTTACAAACCAATCTTGTATAACAATCTTAAATTCCACGTGGAAATGCattataaataaaaatgtgtatttCTTTATACATGACAACTGTATGTCTTTTGTGGTATTTTTCAAACCAGAAAATGTGTGATTTTTATGTGCAGCCTAATGTCAGCGTTTTATCTTTCTCTGTTTGTTTTGATGTCTCTGCATGTGCTTAACTTATTTCTTGTTCAttttcaaataaaacaaatacgaTTTATTCACTGA

Function

symbol description
foxa1 Enables transcription cis-regulatory region binding activity. Acts upstream of or within axial mesoderm morphogenesis. Predicted to be located in nucleus. Is expressed in several structures, including central nervous system; chordo neural hinge; digestive system; endoderm; and liver primordium. Orthologous to human FOXA1 (forkhead box A1).

NR:

description
hepatocyte nuclear factor 3-alpha

GO: NA

KEGG:

id description
K09387 FOXA1, HNF3A; forkhead box protein A1, hepatocyte nuclear factor 3-alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021573951.2 True 2155 mRNA 0.45 2 32502939 32506011

Neighbor

gene id symbol gene type direction distance location
LOC110497673 psma3 coding downstream 88345 32400915 ~ 32414594 (-)
arid4a arid4a coding downstream 104206 32376266 ~ 32398733 (-)
kiaa0586 kiaa0586 coding downstream 133757 32222497 ~ 32369182 (-)
irf2bpl LOC106602196 coding downstream 153895 32345908 ~ 32349044 (-)
dact1 dact1 coding downstream 297207 32189627 ~ 32205732 (-)
clec14a NA coding upstream 36655 32542666 ~ 32545053 (-)
sec23a sec23a coding upstream 85461 32591472 ~ 32618035 (-)
srp54 LOC106602043 coding upstream 112848 32618859 ~ 32628054 (-)
LOC110497688 npas3 coding upstream 264910 32770921 ~ 33161896 (-)
akap6 akap6 coding upstream 661732 33167743 ~ 33361399 (-)
G1615242 NA non-coding downstream 37299 32465165 ~ 32465640 (-)
G1615197 NA non-coding downstream 138712 32363913 ~ 32364227 (-)
G1615196 NA non-coding downstream 140119 32362526 ~ 32362820 (-)
G1615195 NA non-coding downstream 140415 32362289 ~ 32362524 (-)
G1615194 NA non-coding downstream 140785 32361934 ~ 32362154 (-)
G1615287 LOC100194703 non-coding upstream 18719 32524730 ~ 32524955 (-)
G1615289 NA non-coding upstream 19598 32525609 ~ 32525835 (-)
G1615290 NA non-coding upstream 19858 32525869 ~ 32526077 (-)
G1615291 NA non-coding upstream 20101 32526112 ~ 32526341 (-)
G1615293 NA non-coding upstream 23287 32529298 ~ 32529601 (-)
G1615240 NA other downstream 41360 32458530 ~ 32461579 (-)
fbxo34 fbxo34 other downstream 440445 32013186 ~ 32062575 (-)
G1613722 hipl1 other downstream 695692 31719922 ~ 31807247 (-)
G1613218 NA other downstream 1039043 31463121 ~ 31463896 (-)
G1611431 LOC106602420 other downstream 2467257 30034918 ~ 30035682 (-)
G1615357 LOC106602003 other upstream 144915 32650926 ~ 32657769 (-)
G1615793 NA other upstream 906208 33412219 ~ 33413217 (-)
G1615810 hectd1 other upstream 972582 33478593 ~ 33479436 (-)
LOC110498336 LOC106611177 other upstream 2886849 35392412 ~ 35396783 (-)

Expression


Co-expression Network