sec23a (sec23a)


Basic Information

Item Value
gene id sec23a
gene name sec23a
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 32591472 ~ 32618035 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036954659.1
ATTTTGTCTGGAGAAAGCAAATTTCTCGGAGGGTGCTATGGCGACCTTCCCGGAGTTTATTGCACAGAATGAGGAGCGTGATGGGGTGCGCTTCAGCTGGAATGTCTGGCCCTCTAGTCGTCTGGAGGCCACCCGCATGGTCGTCCCCGTTGCCTCTCTGTTCACCCCCCTGAAAGAGCGGCCAGATCTGCCCCCCATCCAGTATGAGCCTGTGCTGTGTAGCAGGGTGACCTGCCGCGCTGTCCTCAACCCCCTCTGCCAAGTGGATTACAGAGCCAAACTGTGGGCTTGTAACTTCTGCTATCAGCGAAATCAGTTTCCTCCTACCTATGCTGGGATATCAGATGTCAACCAGCCAGCTGAGCTGCTGCCACAGTTCTCCACCATTGAATATGTGGTCCAGAGAGGTCCCCTGATGCCGCTTGTCTTCCTGTATGTGGTGGACACCTGCATGGAGGACGAGGACCTGCAGGCTCTGAAAGAGTCCTTACAGATGTCCCTATCCCTGCTTCCTCCTACGGCCCTGGTGGGCCTCATCACCTTTGGACGCATGATCCAAGTCCACGAGCTGGGCTGCGAGGGCATCTCCAAGAGCTATGTCTTCAGGGGAACCAAAGACCTCAATGCCAAACAATTGCAGGAGATGCTGGGGTTGACCAAGCCCACTGCTGCACAGGCAGGACGGGGACCACAAGCTCCACAGGCCCCCCTCTCCAACAGATTCCTCCAGCCAGTCCAGAAGATTGACATGAACCTGACAGACCTGCTTGGAGAGCTGCAGAGAGATCCCTGGCCTGTCACTCAGGGAAAACGGCCCCTCCGCTCGTTAGGATCAGCCATGTCCATCGCTGTTGGCTTGCTGGAGTGCACCTTCCCTAACACTGGGGCACGCATCATGACCTTCATCGGTGGGCCAGCCACTCAGGGCCCAGGCATGGTGGTAGGAGATGAGCTGAAGGCCCCTATTCGCTCCTGGCATGACATTGAGAAGGACAATGCCAAGTTCATGAAGAAGGGGACCAAACATTATGAGGCGTTGGCGAGCCGTGCTTCCACCAATGGCCATATCATAGACATCTATGCATGCGCTCTGGACCAGACTGGACTGCTGGAAATGAAGTGTTGTTCcaatcacactggAGGCTACATGGTGATGGCGGACTCTTTCACAACCTCACTATTCAAACAAACCTTCCAGAGGGTTTTTACCAAAGATGTGTCTGGAGCCTTCAAGATGGCCTTCGCAGGCACTCTGGAGATAAAGACATCTCGAGAGATCAAGATTTCAGGAGCCATCGGGCCATGTGTGTCATTAAATGCCAAAGGACCGTGTGTATCTGAAAATGAAATTGGAACAGGGGGCACCTCTCAATGGAAGATCTGTGGTCTTGATCATAACACCACTCTGGCAGTGTACTTTGAGGTGGTCAATCAGCATAATGCACCTATTCCCCAGGGGGGCCGAGGGGCGGTCCAGTATGTCACACAGTACCAACACTCCAGTGGACAGAAACGCATTCGAGTCACCACCACCGCCAgaaactgggCAGATGCAGGGACCCAGATCCAGACTATTGCAGCATCATTTGACCAGGAGGCTTCAGCCATCCTGATGGCTAGACTGGCTGTGTACCGCGCTGAGACCGAGGAGGGCCCTGATGTGCTTCGCTGGCTGGACAGGCAGCTCATCCGGCTGTGTCAGAAGTTTGGAGATTATCATAAGGATGATCCCAACTCTTTCCGCTTCTCAGAAACCTTTTCTCTCTATCCCCAGTTTATGTTCCACCTAAGAAGATCTCCTTTCCTGCAAGTGTTCAACAACAGCCCAGATGAGAGCTCATACTACAGACACCAGTTCATGCGTCAGGACCTGACCCAGTCTCTCATCATGATACAACCCATTCTCTACGCCTACTCCTTCAACGGGCCCCCAGAGCCTGTGTTGCTGGACAGCAGCAGTATCCTTCCTGATCGCATCCTTCTCATGGACACCTTCTTCCAGATCCTCATCTACCATGGAGAGACTGTGTCTCAGTGGCGTAAGGCAGGCTACCAGGAGTTGCCAGAGTACGAGAACTTCCGCCACCTGCTGCAGGCTCCTGTGGACGACGCCCAGGAGATCCTCCACAGCCGCTTTCCTATGCCCCGCTACATAGACACAGAGCACGGCGgatcacagGCTCGTTTCCTGCTATCTAAAGTAAACCCATCACAAACCCACAACAATATGTATGCATGGGGCCAGGAGTCAGGTGCTCCGATCCTGACGGATGACGTCAGTCTCCAGGTGTTCATGGACCACCTGAAGAAGCTGGCTGTGTCCAGCGCAGCCTGAGACTCAGACCAATGCCATGGTAACCACTGAGTATCATCAACCCAAATACTATATGAACCCAGTGTTGCTCAACAGTAGTCAACTGATGCTATACATGGGAGTGAACAACCAAAAGAGAATACCTCTTTCTCCTTTTTATATTGAAAACCAAGAGCTTTGTACAGGAAAGTGACTATGTACAGAGAATGATCTGCAGTATAGCCTTTTTATGACACTAGTTGGTCAATTATTGTAAAAACTCAAAACAAAAGAAAACATCAGTTGTTGCCTACTAGCTAAATGTttggtcccagatcagtatgtAAGATGAGTCTGGTATTCATGTACTTTTCCCCCAGAACACAGAACACCCAGATTCCAATCAGTTATTTTATTGTGATGCCCAATGGAGTTACTTTATATTACattttctgtctgtttctatttaaaaatatatatatatgtatcttGTATCAGAGAAATATATAAtatcatccagtcagtcagagacGTCAGCGGTAGGCTACAGAAAGAGTGGGTGTCGTGTCGTCGGATGGTACAGATTGGAGAATCCAATACAATGGTATCTAATTAGAGCTAAGTGTTTTTTGTTCTTCACCCTGCGTACGCCACAGAATAATGGGTTATTTCAGACCTTTTAGTGTGTGCTGTCTAATTCATGTTAGTCATTCATATCAAACACTCATTGTGGCTAAAAACCAATCCTAAGAAACATGATAGTATACTATACAGACTGTGGTACTAACATGCTCCACCCTACAGAGTATAGCAGGGTATGAAAGCTGCCTTCCCTTTTCTCTGCATCTGATATAATTTCTGAAAGTGTTGTTTCTGACATTTCTAATAAAATACCTTGTTAAAacacaaa
>XM_021573954.2
GGATACAGTTTGTCAAATTGGCGTGAACAATTATTTGTTTAGCTTTTTAGctacccctaacccttttcctaacatTGATCTAATTCTCATAACCTGCTACGTTACTTATCCAtacctgctgcgtaagttctaACCTGCCACAAAAAGTAAATTCTGACAAACTGTATCCCTTCTAGCCAAAACCCTCTTGACGTGGCATTGCTTCCCGCAGCCATGTTTTGTTAGCTACGTTGTCACATCCTAcgttgtatgcggggcgctgttcACTCACTGTCACCAGTAGCAGTGTGGAACTCGTCTGAGGATATCAGTTCTCGGAGGGTGCTATGGCGACCTTCCCGGAGTTTATTGCACAGAATGAGGAGCGTGATGGGGTGCGCTTCAGCTGGAATGTCTGGCCCTCTAGTCGTCTGGAGGCCACCCGCATGGTCGTCCCCGTTGCCTCTCTGTTCACCCCCCTGAAAGAGCGGCCAGATCTGCCCCCCATCCAGTATGAGCCTGTGCTGTGTAGCAGGGTGACCTGCCGCGCTGTCCTCAACCCCCTCTGCCAAGTGGATTACAGAGCCAAACTGTGGGCTTGTAACTTCTGCTATCAGCGAAATCAGTTTCCTCCTACCTATGCTGGGATATCAGATGTCAACCAGCCAGCTGAGCTGCTGCCACAGTTCTCCACCATTGAATATGTGGTCCAGAGAGGTCCCCTGATGCCGCTTGTCTTCCTGTATGTGGTGGACACCTGCATGGAGGACGAGGACCTGCAGGCTCTGAAAGAGTCCTTACAGATGTCCCTATCCCTGCTTCCTCCTACGGCCCTGGTGGGCCTCATCACCTTTGGACGCATGATCCAAGTCCACGAGCTGGGCTGCGAGGGCATCTCCAAGAGCTATGTCTTCAGGGGAACCAAAGACCTCAATGCCAAACAATTGCAGGAGATGCTGGGGTTGACCAAGCCCACTGCTGCACAGGCAGGACGGGGACCACAAGCTCCACAGGCCCCCCTCTCCAACAGATTCCTCCAGCCAGTCCAGAAGATTGACATGAACCTGACAGACCTGCTTGGAGAGCTGCAGAGAGATCCCTGGCCTGTCACTCAGGGAAAACGGCCCCTCCGCTCGTTAGGATCAGCCATGTCCATCGCTGTTGGCTTGCTGGAGTGCACCTTCCCTAACACTGGGGCACGCATCATGACCTTCATCGGTGGGCCAGCCACTCAGGGCCCAGGCATGGTGGTAGGAGATGAGCTGAAGGCCCCTATTCGCTCCTGGCATGACATTGAGAAGGACAATGCCAAGTTCATGAAGAAGGGGACCAAACATTATGAGGCGTTGGCGAGCCGTGCTTCCACCAATGGCCATATCATAGACATCTATGCATGCGCTCTGGACCAGACTGGACTGCTGGAAATGAAGTGTTGTTCcaatcacactggAGGCTACATGGTGATGGCGGACTCTTTCACAACCTCACTATTCAAACAAACCTTCCAGAGGGTTTTTACCAAAGATGTGTCTGGAGCCTTCAAGATGGCCTTCGCAGGCACTCTGGAGATAAAGACATCTCGAGAGATCAAGATTTCAGGAGCCATCGGGCCATGTGTGTCATTAAATGCCAAAGGACCGTGTGTATCTGAAAATGAAATTGGAACAGGGGGCACCTCTCAATGGAAGATCTGTGGTCTTGATCATAACACCACTCTGGCAGTGTACTTTGAGGTGGTCAATCAGCATAATGCACCTATTCCCCAGGGGGGCCGAGGGGCGGTCCAGTATGTCACACAGTACCAACACTCCAGTGGACAGAAACGCATTCGAGTCACCACCACCGCCAgaaactgggCAGATGCAGGGACCCAGATCCAGACTATTGCAGCATCATTTGACCAGGAGGCTTCAGCCATCCTGATGGCTAGACTGGCTGTGTACCGCGCTGAGACCGAGGAGGGCCCTGATGTGCTTCGCTGGCTGGACAGGCAGCTCATCCGGCTGTGTCAGAAGTTTGGAGATTATCATAAGGATGATCCCAACTCTTTCCGCTTCTCAGAAACCTTTTCTCTCTATCCCCAGTTTATGTTCCACCTAAGAAGATCTCCTTTCCTGCAAGTGTTCAACAACAGCCCAGATGAGAGCTCATACTACAGACACCAGTTCATGCGTCAGGACCTGACCCAGTCTCTCATCATGATACAACCCATTCTCTACGCCTACTCCTTCAACGGGCCCCCAGAGCCTGTGTTGCTGGACAGCAGCAGTATCCTTCCTGATCGCATCCTTCTCATGGACACCTTCTTCCAGATCCTCATCTACCATGGAGAGACTGTGTCTCAGTGGCGTAAGGCAGGCTACCAGGAGTTGCCAGAGTACGAGAACTTCCGCCACCTGCTGCAGGCTCCTGTGGACGACGCCCAGGAGATCCTCCACAGCCGCTTTCCTATGCCCCGCTACATAGACACAGAGCACGGCGgatcacagGCTCGTTTCCTGCTATCTAAAGTAAACCCATCACAAACCCACAACAATATGTATGCATGGGGCCAGGAGTCAGGTGCTCCGATCCTGACGGATGACGTCAGTCTCCAGGTGTTCATGGACCACCTGAAGAAGCTGGCTGTGTCCAGCGCAGCCTGAGACTCAGACCAATGCCATGGTAACCACTGAGTATCATCAACCCAAATACTATATGAACCCAGTGTTGCTCAACAGTAGTCAACTGATGCTATACATGGGAGTGAACAACCAAAAGAGAATACCTCTTTCTCCTTTTTATATTGAAAACCAAGAGCTTTGTACAGGAAAGTGACTATGTACAGAGAATGATCTGCAGTATAGCCTTTTTATGACACTAGTTGGTCAATTATTGTAAAAACTCAAAACAAAAGAAAACATCAGTTGTTGCCTACTAGCTAAATGTttggtcccagatcagtatgtAAGATGAGTCTGGTATTCATGTACTTTTCCCCCAGAACACAGAACACCCAGATTCCAATCAGTTATTTTATTGTGATGCCCAATGGAGTTACTTTATATTACattttctgtctgtttctatttaaaaatatatatatatgtatcttGTATCAGAGAAATATATAAtatcatccagtcagtcagagacGTCAGCGGTAGGCTACAGAAAGAGTGGGTGTCGTGTCGTCGGATGGTACAGATTGGAGAATCCAATACAATGGTATCTAATTAGAGCTAAGTGTTTTTTGTTCTTCACCCTGCGTACGCCACAGAATAATGGGTTATTTCAGACCTTTTAGTGTGTGCTGTCTAATTCATGTTAGTCATTCATATCAAACACTCATTGTGGCTAAAAACCAATCCTAAGAAACATGATAGTATACTATACAGACTGTGGTACTAACATGCTCCACCCTACAGAGTATAGCAGGGTATGAAAGCTGCCTTCCCTTTTCTCTGCATCTGATATAATTTCTGAAAGTGTTGTTTCTGACATTTCTAATAAAATACCTTGTTAAAacacaaa

Function

symbol description
sec23a Predicted to enable GTPase activator activity and zinc ion binding activity. Acts upstream of or within pectoral fin morphogenesis; protein targeting; and skeletal system development. Predicted to be located in cytosol. Predicted to be extrinsic component of membrane. Predicted to be part of COPII vesicle coat. Predicted to be active in endoplasmic reticulum exit site. Is expressed in several structures, including cartilage element; hatching gland; notochord; polster; and tail bud. Used to study craniolenticulosutural dysplasia. Human ortholog(s) of this gene implicated in craniolenticulosutural dysplasia. Orthologous to human SEC23A (SEC23 homolog A, COPII coat complex component).

NR:

description
protein transport protein Sec23A

GO: NA

KEGG:

id description
K14006 SEC23; protein transport protein SEC23

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036954659.1 False 3203 mRNA 0.49 18 32591472 32617088
XM_021573954.2 True 3492 mRNA 0.49 18 32591472 32618035

Neighbor

gene id symbol gene type direction distance location
clec14a NA coding downstream 46419 32542666 ~ 32545053 (-)
LOC110497675 foxa1 coding downstream 85461 32502939 ~ 32506011 (-)
LOC110497673 psma3 coding downstream 176878 32400915 ~ 32414594 (-)
arid4a arid4a coding downstream 192739 32376266 ~ 32398733 (-)
kiaa0586 kiaa0586 coding downstream 222290 32222497 ~ 32369182 (-)
srp54 LOC106602043 coding upstream 824 32618859 ~ 32628054 (-)
LOC110497688 npas3 coding upstream 152886 32770921 ~ 33161896 (-)
akap6 akap6 coding upstream 549708 33167743 ~ 33361399 (-)
LOC110497690 arhgap5 coding upstream 746428 33364463 ~ 33401640 (-)
nubpl nubpl coding upstream 795185 33413220 ~ 33422265 (-)
G1615303 NA non-coding downstream 42290 32548916 ~ 32549182 (-)
G1615293 NA non-coding downstream 61871 32529298 ~ 32529601 (-)
G1615291 NA non-coding downstream 65131 32526112 ~ 32526341 (-)
G1615290 NA non-coding downstream 65395 32525869 ~ 32526077 (-)
G1615289 NA non-coding downstream 65637 32525609 ~ 32525835 (-)
G1615349 NA non-coding upstream 31552 32649587 ~ 32650492 (-)
G1615352 LOC106602024 non-coding upstream 88569 32706604 ~ 32714044 (-)
G1615401 NA non-coding upstream 131704 32749739 ~ 32814084 (-)
G1615414 NA non-coding upstream 140819 32758854 ~ 32760174 (-)
G1615446 NA non-coding upstream 193775 32811810 ~ 32812468 (-)
G1615240 NA other downstream 129893 32458530 ~ 32461579 (-)
fbxo34 fbxo34 other downstream 528978 32013186 ~ 32062575 (-)
G1613722 hipl1 other downstream 784225 31719922 ~ 31807247 (-)
G1613218 NA other downstream 1127576 31463121 ~ 31463896 (-)
G1611431 LOC106602420 other downstream 2555790 30034918 ~ 30035682 (-)
G1615357 LOC106602003 other upstream 32891 32650926 ~ 32657769 (-)
G1615793 NA other upstream 794184 33412219 ~ 33413217 (-)
G1615810 hectd1 other upstream 860558 33478593 ~ 33479436 (-)
LOC110498336 LOC106611177 other upstream 2774825 35392412 ~ 35396783 (-)

Expression


Co-expression Network