cfl2 (LOC106602033)


Basic Information

Item Value
gene id cfl2
gene name LOC106602033
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 32687789 ~ 32693112 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021573961.2
CCGCTGCAAGTGCAGTGGCTCATACTGGCGCGCCCCTTACCACCACctttctcccccgctctctcccaGTCCCACACACCCGGTCGGCTCGTCCAAACATTACCATATCTATTTACCCACATAATCGCAAATCACACAGGACGATCGGACAACATGGCCTCTGGTGTCACTGTCAACGATGAAGTCATCAAGGTCTTCAATGACATGAAAGTCAGGAAGTCATCCTCTACCGAAGATGTAAAAAAGCGTAAAAAGGCTGTGCTGTTTTGCCTCAGCGATGACAAGAAGAAGATTGTTGTGGAAGAGGGCAAGTGGATTCTGGTTGGTGACATTGGGGAGTCGGTGGACGACCCATACGCCTGCTTCGTCAAACTTCTACCTCTCAACGATTGCAGATACGGCTTATATGATGCCACATATGAAACAAAAGAATCCAAGAAAGAAGACCTGGTATTTATATTTTGGGCACCTGAGGGTGCTCCCTTGAAAAGCAAGATGATCTATGCTAGCTCTAAAGATGCCATTAAAAAGAAGTTCACAGGTATCAAACACGAATGGCAAGTCAACGGATTAGACGACATCCAGGACCGCGCCACCCTGGCAGACAAGTTGGGGGGAAACGTGGTGGTGTCACTCGAAGGGTTACCATTGTAAACGGAAAATACTACGTGCCATCTGGATTCCAGACGCTTTCACCTTCGCAGTTGTGTCTATATAATTTGGTCCTAAAGGAATAGCTGTAGGCTTTTATTTTGTTAAGTTTTATTATCTTATTTTTTTTTCGCACAAAGGAGATCTCATTAACATATGCAAAAGCCTACAAGTTATTTTGCCagctgacttaaaaaaaaaaaaaatcctggtattttttttattttatttttttttaccttcgaGGAATGTTCACTTATCAGGTGTTTTGCCAAACAAATATGTACAGCAGCACCACACTACCTGAGATTAATAACACTCCCAAAACAAAAAGTTTAGCACTGTTTTTGCATTCTTTGCCGCCTAAACAGTGACTAGATGCTCAGTAGAGTAGGAAAATGTGAACGCTTTCTATAATGCCTTGACAGTCATATTCACTGCCCAGGTTACAGCTAAAAGCAAGTATTTTGCACTAATTAGGTTTTTCATATGACTGACGTATTTATTTGAAGTGTTCTATCGTATCCAATATGTTATTCGACCTGGCAAAACACGTAAtagactatgcatatatgaaGCACTTTTTTGTTTATACACTACAAGTTGAGACAAAAAAGTTTCGAATAACTATAAAGAATATCTATATTTATGTCAACTAGAGATGTTACCTCAGTTTTCATTCCTGTTATGCATATGGACAAGAACAGATGAGTATTTGACTGTTCAATTGCCACCTTACTTTCATTTGAATGTACAGTACACCACCGTAAAAAGGAGGGGTTGTggttgcagttttttttttaacactaaacaaaataattcAAATATATCAGTAAAGATGGCAATATGTGCATTTGGAGCATTAAGTGGAACATTGTTTTTGAGATCAGGCGAGGAGGTTGCCACTTTGCAATAAAACCTTGTGGCAGATAACAGAAAGAAGTGTCTTCTGTTCTGGGTTGTCTCTGAGTGTATCTGTTCATTAGGAGGCCTGAGAAGCAATAAAGAGATACATTATTGATTTCCTCTAACAGGAAATAGAAAGATCTGGTCTATATGCTATGCTATATTGCCTTGGTTAGTTTTTTATTCAATTAAACCAGATGCAGTGAGTGAGTGACAATCTAATGGGCTCTGTTCAGGAGGGCAGCTACAATTTAACGGAACATTCTGGTATAAATATATTGTGTATAATTGGGAATAATTTCAGCTCTACACATTATATTTTCTGTGTGAAACTCCAAATGGAAATAAGGTGGATGCTTCTTATATCTAATATCTACACTGTTGTGCGTGAAGCCAAGCTAGTAAGGCTATTTCTGTTGTAGTACAGCAAATCATTACTGACCAACCTCCGATCATACTGTATGTCATTGTGAATTGGAGAACTGTCAACTTATGTCATTGAAATATTTATAGATTGAATCATATTTTTATGTAATGCTCTTTCAACCTTAGAGAACTGCAGTTTCCCAAATTAATCAAAGTACCTTTTTTATACTCTCCATCTAAGTTTCAATGAACAGCCAGGCCAGTCTGCCCCTGTCCCTTCATTTGAACAGGGCCAAATGTTtctaggaaagagagagtggtgcGTCTTTTACTGCAACTGGGCTGGGGGCCAGGCCTGCTGCCTTCTCCCTGTAGAGAATTTGATCTGCAGGCAGTGAGCAATCCTCTGCTGGTCAGAGCTATTTATGGCCAACACATGCTTTTGTGTCTTGTCATCGTTGTCCACAAATGGCAAAACTGGACAAGCTTCCAAAGAGCAGCGAAAGGGAAGCCCTGGTAGAGGAGAAGAGTAGCACGTTAAAGTACACACGCTTGCCGCCCACTACCAAGAATGCTTTTCACACTCAAGGAACAGAATAGGAAATAAGGGGATGGAAAAATCACATAGGAAAAAAATCCTTGGTGTATTAATATAAGATGTTGTAAACCCCTGCTTATGGGAAGTATCTAACGCAACAGATGGCCCAGTCCTGTGACAGCTGAAATATATGGTGTAGGTTGGCGTTGGTGTCGCACCAAATAGACTTCGAACAAACTCTTGATTGTATCTCTGTCTGGACTGACTACGCTACAACTTAGTGAGCAACAAGTATTATCCAATGGTGTCCCCAGTGTCTAGAACGTTGTAGTCTACTAGTCATGgttaggtaacctagtggttaagagcgttgggccagtaaaccaaaaggtcgctggtttgaatccccgagccgactaggttaAATCTGTccatatgcccttgagcaaggcaaccctaattgcttctgtaagtctctctggataagagcgtctgctaaaggaCTAAACATTTAATAATGTTATGAAACTGGTCTGAAGGCTACTGCTGTATaacttatataatatatatatataatcttatACGGGCAAGTCACACAAACATGCCTATTGAGTAAGGAAGTTACTTTTGTCCTCCGAAGAGGGGGGGTGGTGGATGGGCCGAttgataaaataaaaatgtatgagGATATTAATAGGAAGGTCAATAGAGGTTattcattttcatacttttttttgtTGAACTTTCATCTTCTAGACACTGCCACATCAAGTGCATCCtatagcctggtggaaccagccctGCATCCTTTGCTCAGGCATATCATTTATGTTGGTCTTAACTAGTCTAAAAATAGTTTTAAATAGTCTAATCAATATATCCAATACATTTGTCAACGAGCCAATTAAAGATTAAATCATAACTATTTTCCTCTTCAGTGGAAAATTCCATGAACTTTTCCCTACTGTGTCTCTATATGGAAGATACTGTGTTGAATTTAGAATGTGGTCTCTCTCAGAGCACTTCATGTAAGCCCTTATACCCTCATGCATATGTTAAACAAAGTGCCTGTTATTCATGTCAACTCAGAATATGTGTCTGGACAAGAAAGATGAAAATAAACAAGTGACCTCTC
>TU1847430
CctttctcccccgctctctcccaGTCCCACACACCCGGTCGGCTCGTCCAAACATTACCATATCTATTTACCCACATAATCGCAAATCACACAGGACGATCGGACAACATGGCCTCTGGTGTCACTGTCAACGATGAAGTCATCAAGGTCTTCAATGACATGAAAGTCAGGAAGTCATCCTCTACCGAAGATGTAAAAAAGCGTAAAAAGGCTGTGCTGTTTTGCCTCAGCGATGACAAGAAGAAGATTGTTGTGGAAGAGGGCAAGTGGATTCTGGTTGGTGACATTGGGGAGTCGGTGGACGACCCATACGCCTGCTTCGTCAAACTTCTACCTCTCAACGATTGCAGATACGGCTTATATGATGCCACATATGAAACAAAAGAATCCAAGAAAGAAGACCTGGGCACCTGAGGGTGCTCCCTTGAAAAGCAAGATGATCTATGCTAGCTCTAAAGATGCCATTAAAAAGAAGTTCACAGGTATCAAACACGAATGGCAAGTCAACGGATTAGACGACATCCAGGACCGCGCCACCCTGGCAGACAAGTTGGGGGGAAACGTGGTGGTGTCACTCGAAGGGTTACCATTGTAAACGGAAAATACTACGTGCCATCTGGATTCCAGACGCTTTCACCTTCGCAGTTGTGTCTATATAATTTGGTCCTAAAGGAATAGCTGTAGGCTTTTATTTTGTTAAGTTTTATTATCTTATTTTTTTTTCGCACAAAGGAGATCTCATTAACATATGCAAAAGCCTACAAGTTATTTTGCCagctgacttaaaaaaaaaaaaaatcctggtattttttttattttatttttttttaccttcgaGGAATGTTCACTTATCAGGTGTTTTGCCAAACAAATATGTACAGCAGCACCACACTACCTGAGATTAATAACACTCCCAAAACAAAAAGTTTAGCACTGTTTTTGCATTCTTTGCCGCCTAAACAGTGACTAGATGCTCAGTAGAGTAGGAAAATGTGAACGCTTTCTATAATGCCTTGACAGTCATATTCACTGCCCAGGTTACAGCTAAAAGCAAGTATTTTGCACTAATTAGGTTTTTCATATGACTGACGTATTTATTTGAAGTGTTCTATCGTATCCAATATGTTATTCGACCTGGCAAAACACGTAAtagactatgcatatatgaaGCACTTTTTTGTTTATACACTACAAGTTGAGACAAAAAAGTTTCGAATAACTATAAAGAATATCTATATTTATGTCAACTAGAGATGTTACCTCAGTTTTCATTCCTGTTATGCATATGGACAAGAACAGATGAGTATTTGACTGTTCAATTGCCACCTTACTTTCATTTGAATGTACAGTACACCACCGTAAAAAGGAGGGGTTGTggttgcagttttttttttaacactaaacaaaataattcAAATATATCAGTAAAGATGGCAATATGTGCATTTGGAGCATTAAGTGGAACATTGTTTTTGAGATCAGGCGAGGAGGTTGCCACTTTGCAATAAAACCTTGTGGC
>TU1847432
ctaggaaagagagagtggtgcGTCTTTTACTGCAACTGGGCTGGGGGCCAGGCCTGCTGCCTTCTCCCTGTAGAGAATTTGATCTGCAGGCAGTGAGCAATCCTCTGCTGGTCAGAGCTATTTATGGCCAACACATGCTTTTGTGTCTTGTCATCGTTGTCCACAAATGGCAAAACTGGACAAGCTTCCAAAGAGCAGAGAAGAGTAGCACGTTAAAGTACACACGCTTGCCGCCCACTACCAAGAATGCTTTTCACACTCAAGGAACAGAATAGGAAATAAGGGGATGGAAAAATCACATAGGAAAAAAATCCTTGGTGTATTAATATAAGATGTTGTAAACCCCTGCTTATGGGAAGTATCTAACGCAACAGATGGCCCAGTCCTGTGACAGCTGAAATATATGGTGTAGGTTGGCGTTGGTGTCGCACCAAATAGACTTCGAACAAACTCTTGATTGTATCTCTGTCTGGACTGACTACGCTACAACTTAGTGAGCAACAAGTATTATCCAATGGTGTCCCCAGTGTCTAGAACGTTGTAGTCTACTAGTCATGgttaggtaacctagtggttaagagcgttgggccagtaaaccaaaaggtcgctggtttgaatccccgagccgactaggttaAATCTGTccatatgcccttgagcaaggcaaccctaattgcttctgtaagtctctctggataagagcgtctgctaaaggaCTAAACATTTAATAATGTTATGAAACTGGTCTGAAGGCTACTGCTGTATaacttatataatatatatatataatcttatACGGGCAAGTCACACAAACATGCCTATTGAGTAAGGAAGTTACTTTTGTCCTCCGAAGAGGGGGGGTGGTGGATGGGCCGAttgataaaataaaaatgtatgagGATATTAATAGGAAGGTCAATAGAGGTTattcattttcatacttttttttgtTGAACTTTCATCTTCTAGACACTGCCACATCAAGTGCATCCtatagcctggtggaaccagccctGCATCCTTTGCTCAGGCATATCATTTATGTTGGTCTTAACTAGTCTAAAAATAGTTTTAAATAGTCTAATCAATATATCCAATACATTTGTCAACGAGCCAATTAAAGATTAAATCATAACTATTTTCCTCTTCAGTGGAAAATTCCATGAACTTTTCCCTACTGTGTCTCTATATGGAAGATACTGTGTTGAATTTAGAATGTGGTCTCTCTCAGAGCACTTCATGTAAGCCCTTATACCCTCATGCATATGTTAAACAAAGTGCCTGTTATTCATGTCAACTCAGAATATGTGTCTGGACAAGAAAGATGAAAATAAACAAGT

Function

NR:

description
PREDICTED: cofilin-2 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021573961.2 False 3596 mRNA 0.40 4 32687789 32693112
TU1847430 False 1519 TUCP 0.40 4 32687834 32691094
TU1847432 True 1340 lncRNA 0.41 2 32691742 32693104

Neighbor

gene id symbol gene type direction distance location
baz1a LOC106602003 coding upstream 214 32640559 ~ 32687575 (+)
zgc:109986 NA coding upstream 48612 32633625 ~ 32639177 (+)
sstr1a sstr1 coding upstream 145894 32540480 ~ 32541895 (+)
ttc6 ttc6 coding upstream 152984 32507326 ~ 32534805 (+)
mipol1 mipol1 coding upstream 191373 32398834 ~ 32496416 (+)
LOC110497684 LOC106602024 coding downstream 6128 32699240 ~ 32715684 (+)
LOC110497685 LOC106601994 coding downstream 22764 32715876 ~ 32723719 (+)
LOC110497687 egln3 coding downstream 50409 32707637 ~ 32750947 (+)
dtd2 dtd2 coding downstream 729165 33422277 ~ 33423351 (+)
heatr5a heatr5a coding downstream 755196 33448308 ~ 33474231 (+)
G1614224 NA non-coding upstream 114539 32573035 ~ 32573250 (+)
G1614207 NA non-coding upstream 143348 32542491 ~ 32544441 (+)
G1614198 NA non-coding upstream 161405 32526079 ~ 32526384 (+)
G1614195 NA non-coding upstream 164643 32522925 ~ 32523146 (+)
G1614184 NA non-coding upstream 186210 32501367 ~ 32501579 (+)
G1614309 NA non-coding downstream 42773 32735885 ~ 32789473 (+)
G1614371 NA non-coding downstream 191840 32884952 ~ 32936564 (+)
G1614364 NA non-coding downstream 192449 32885561 ~ 32903848 (+)
G1614406 NA non-coding downstream 215893 32909005 ~ 32958271 (+)
G1614241 LOC106602099 other upstream 77372 32602478 ~ 32610417 (+)
timm9 timm9 other upstream 312107 32369230 ~ 32375682 (+)
G1613388 NA other upstream 953142 31730859 ~ 31780333 (+)
G1613345 LOC106602337 other upstream 1025726 31657491 ~ 31662063 (+)
G1613190 NA other upstream 1249219 31438260 ~ 31438570 (+)
G1614510 NA other downstream 417149 33110261 ~ 33110861 (+)
G1614550 NA other downstream 474518 33167630 ~ 33168890 (+)
G1614581 akap6 other downstream 518745 33211857 ~ 33215968 (+)
G1614744 NA other downstream 838724 33531836 ~ 33533452 (+)
G1614761 NA other downstream 888900 33582012 ~ 33583350 (+)
cfl2 LOC106602033 other upstream 648 32687789 ~ 32693112 (+)

Expression


Co-expression Network