LOC110497684 (LOC106602024)


Basic Information

Item Value
gene id LOC110497684
gene name LOC106602024
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 32699240 ~ 32715684 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036954667.1
GACTTTGGCTCCACCTTCTCAGATCCCACCGTCACACGACTTCCTCACTATTCCACCCGCAGCAGCCATGATGCAAGAAGGGCTGGACGATGGTCCCGATTTCCTCTccgaggaggacagaggaCCTAGGGCAGTCAATGTTGACCTTCAAACTGATGCAACACTTCAAGTGGACATTTCTGATGCGTTGAGTGAGCGGGACAAGGTTAAGTTTACTGTCCATACTAAGAGCACTCTTCCTAACTTCAAGCAGAATGAGTTTTCAGTGGTGAGGCAGCATGAGGAGTTCATCTGGCTCCATGACTCATTCGTGGAGAATGAGGAGTATGCAGGCTACATTATTCCCCCTGCCCCACCAAGACCTGACTTCGATGCCTCCAGGGAGAAGTTACAGAAACTGGGGGAAGGTGAAGGTTCCATGACCAAGGAAGAGTTCACCAAAATGAAACAGGAACTTGAAGCCGAATACTTGGCTATCTTCAAGAAGACCGTGGCGATGCATGAAGTGTTTCTTTGCCGTGTGGCTGCCCATCCTGTCTTAAGGAAAGACATGAACTTCCATGTCTTTTTAGAGTACAACCAAGACCTGAGTGTCCGAGGCAAAAACAAGAGGGAGAAGATGGAAGATTTCTTCAAGAATGTGGTGAAGTCAGCAGACGGCGTGTTAGTGGCAGGGGTGAAGGATGTAGATGATTTCTTTGAGCATGAGAAGACATTCCTTTTAGAGTACCATAATCGTGTCAAAGATGCCTCCTCCAAATCTGATAGAATGATCAGGTCTCACAAAAGTGCTGCAGATGATATCAATAGAATCGCCTCCACACTGTACACTTTAGGAACCCAGGACTCCACAGATGTGTGCAAATTTTtcttgaaagtctctgagctgtTTGAGAAAACACGGAAAATAGAGGCTCGAGTGGCTGCAGATGAGGACCTGAAACTTGCCGACTTACTGAAGTATTATCTCAGGGAGTCACAAGCTGCTAAGGATCTATTGTATAGACGAGGGAGGGCCCTGGTAGATTACGAGAATGCAAACAAAGCTCTGGACAAAGCCAGGGCAAAGAACAAAGATGTGCTTCAGGCAGAGACCAGCCAGCAGGTGTGCTGTCAGAAGTTTGAGAAAATCTCAGAGTCCGCAAAGCAAGAGCTTATAGACTTCAAGACGAGACGAGTAGCAGCCTTCAGAAAGAACTTGGTGGAACTTGCCGAACTGGAACTCAAACATGCTAAGGGTAATTTACAATTATTGCAAAGCTGTGTCGGGGTCCTCAAAGGAGACACTTAGGTCTTTACTGAAGGTTCACTGTACAGAGCTTTCCCCGCTTTGGTCTGGTCTTCACTGAGAAGATGGAAGAGAGAGCATATCTGGGGTCCGTTTGTTTTCAGGATGTCTGTTCGTAGTCATCACCAGAGACACCAGAGATCAGAGACACCGAACTCCACCCACAACCCCCCTAAAACGTGAGGAAGCCGCGGTGGAATACCTGCAATATCCACACAGCACAAGAACCTATAACTTTGTTAAATCACGTCAACTTTTTCATTGTTAACAGCAATCATAATTTTCCATGGGAATCTTCTCCCAATCTTCTCCCAATCTAGATTGATGATTTgttattattttgtttagtgtaatCTTTGAGGCCAATAGTTTCAGTAAAACTTTTTTCTGTGATGCTGCTCAGTTACTTTGTTCAAGATGAGCTCATTCTTACTATTATTGAAGTGTATTGTCACTAAAAGCCTTGTACATGTTGTATTAGTTCTCACTGTACTGCTAATGATTGTTTAAATTTTTACTAATACTTTTGTTTTTCAGTAACTTCATACAAGTTATGTTCTTTTTTTTCATTACAGACAAGTAATGCTTCAGTATGTTTGCCTTAATGTAGAGTAAGCCTATCaagtattgtaaaaaaaaaataaattatatgttttttgtttttccccagtttttttttttaagtgcacTGTATATGAATGTTTTTTTCCTTCTGTGACCAAAGCTTCCATTTATTTAGATGGAGAAATGCTGAAACAAATGGTTGTACTGATAATGATGATTAAAATGATTATGAAAATATTAATAATAAATGATACTGTTTACCTTAGAACCGTCCTGAACATATTTCATGAAATGTTTTGACTAGGCTATTTGTTGTCCATCTATCTAGTTGTCAACATTTTTAATTTTGTATATTTTATGACTCCGAGAAACATGGAAGAAAAGCCAGGGGAAGCCAATGGAAAAGTACCTTCAATATCATATTAAACTCCATTTCGACTGTTCATATTAAGGTTGAATAAAAATATGATTGACACTTTTTAAA
>XM_036954668.1
ACTATTCCACCCGCAGCAGCCATGATGCAAGAAGGGCTGGACGATGGTCCCGATTTCCTCTccgaggaggacagaggagtgttcggagcatgctagatagctaactagcaGAGGTGGTCGCCTGCTCCCGCCTGTCTTTCCTTAAACATGCGCTGTaaacatggagatatggccgtGTGGGGACACTAATCCCAACCCTATTAAAGCCTAGGGCAGTCAATGTTGACCTTCAAACTGATGCAACACTTCAAGTGGACATTTCTGATGCGTTGAGTGAGCGGGACAAGGTTAAGTTTACTGTCCATACTAAGAGCACTCTTCCTAACTTCAAGCAGAATGAGTTTTCAGTGGTGAGGCAGCATGAGGAGTTCATCTGGCTCCATGACTCATTCGTGGAGAATGAGGAGTATGCAGGCTACATTATTCCCCCTGCCCCACCAAGACCTGACTTCGATGCCTCCAGGGAGAAGTTACAGAAACTGGGGGAAGGTGAAGGTTCCATGACCAAGGAAGAGTTCACCAAAATGAAACAGGAACTTGAAGCCGAATACTTGGCTATCTTCAAGAAGACCGTGGCGATGCATGAAGTGTTTCTTTGCCGTGTGGCTGCCCATCCTGTCTTAAGGAAAGACATGAACTTCCATGTCTTTTTAGAGTACAACCAAGACCTGAGTGTCCGAGGCAAAAACAAGAGGGAGAAGATGGAAGATTTCTTCAAGAATGTGGTGAAGTCAGCAGACGGCGTGTTAGTGGCAGGGGTGAAGGATGTAGATGATTTCTTTGAGCATGAGAAGACATTCCTTTTAGAGTACCATAATCGTGTCAAAGATGCCTCCTCCAAATCTGATAGAATGATCAGGTCTCACAAAAGTGCTGCAGATGATATCAATAGAATCGCCTCCACACTGTACACTTTAGGAACCCAGGACTCCACAGATGTGTGCAAATTTTtcttgaaagtctctgagctgtTTGAGAAAACACGGAAAATAGAGGCTCGAGTGGCTGCAGATGAGGACCTGAAACTTGCCGACTTACTGAAGTATTATCTCAGGGAGTCACAAGCTGCTAAGGATCTATTGTATAGACGAGGGAGGGCCCTGGTAGATTACGAGAATGCAAACAAAGCTCTGGACAAAGCCAGGGCAAAGAACAAAGATGTGCTTCAGGCAGAGACCAGCCAGCAGGTGTGCTGTCAGAAGTTTGAGAAAATCTCAGAGTCCGCAAAGCAAGAGCTTATAGACTTCAAGACGAGACGAGTAGCAGCCTTCAGAAAGAACTTGGTGGAACTTGCCGAACTGGAACTCAAACATGCTAAGGGTAATTTACAATTATTGCAAAGCTGTGTCGGGGTCCTCAAAGGAGACACTTAGGTCTTTACTGAAGGTTCACTGTACAGAGCTTTCCCCGCTTTGGTCTGGTCTTCACTGAGAAGATGGAAGAGAGAGCATATCTGGGGTCCGTTTGTTTTCAGGATGTCTGTTCGTAGTCATCACCAGAGACACCAGAGATCAGAGACACCGAACTCCACCCACAACCCCCCTAAAACGTGAGGAAGCCGCGGTGGAATACCTGCAATATCCACACAGCACAAGAACCTATAACTTTGTTAAATCACGTCAACTTTTTCATTGTTAACAGCAATCATAATTTTCCATGGGAATCTTCTCCCAATCTTCTCCCAATCTAGATTGATGATTTgttattattttgtttagtgtaatCTTTGAGGCCAATAGTTTCAGTAAAACTTTTTTCTGTGATGCTGCTCAGTTACTTTGTTCAAGATGAGCTCATTCTTACTATTATTGAAGTGTATTGTCACTAAAAGCCTTGTACATGTTGTATTAGTTCTCACTGTACTGCTAATGATTGTTTAAATTTTTACTAATACTTTTGTTTTTCAGTAACTTCATACAAGTTATGTTCTTTTTTTTCATTACAGACAAGTAATGCTTCAGTATGTTTGCCTTAATGTAGAGTAAGCCTATCaagtattgtaaaaaaaaaataaattatatgttttttgtttttccccagtttttttttttaagtgcacTGTATATGAATGTTTTTTTCCTTCTGTGACCAAAGCTTCCATTTATTTAGATGGAGAAATGCTGAAACAAATGGTTGTACTGATAATGATGATTAAAATGATTATGAAAATATTAATAATAAATGATACTGTTTACCTTAGAACCGTCCTGAACATATTTCATGAAATGTTTTGACTAGGCTATTTGTTGTCCATCTATCTAGTTGTCAACATTTTTAATTTTGTATATTTTATGACTCCGAGAAACATGGAAGAAAAGCCAGGGGAAGCCAATGGAAAAGTACCTTCAATATCATATTAAACTCCATTTCGACTGTTCATATTAAGGTTGAATAAAAATATGATTGACACTTTTTAAA

Function

NR:

description
sorting nexin-6-like

GO:

id name namespace
GO:0035091 phosphatidylinositol binding molecular_function

KEGG:

id description
K17920 SNX5_6_32; sorting nexin-5/6/32

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036954667.1 False 2336 mRNA 0.41 14 32699240 32715684
XM_036954668.1 True 2418 mRNA 0.41 15 32699286 32715684

Neighbor

gene id symbol gene type direction distance location
cfl2 LOC106602033 coding upstream 6128 32687789 ~ 32693112 (+)
baz1a LOC106602003 coding upstream 11665 32640559 ~ 32687575 (+)
zgc:109986 NA coding upstream 60063 32633625 ~ 32639177 (+)
sstr1a sstr1 coding upstream 157345 32540480 ~ 32541895 (+)
ttc6 ttc6 coding upstream 164435 32507326 ~ 32534805 (+)
LOC110497685 LOC106601994 coding downstream 192 32715876 ~ 32723719 (+)
LOC110497687 egln3 coding downstream 27837 32707637 ~ 32750947 (+)
dtd2 dtd2 coding downstream 706593 33422277 ~ 33423351 (+)
heatr5a heatr5a coding downstream 732624 33448308 ~ 33474231 (+)
hectd1 hectd1 coding downstream 760778 33421162 ~ 33504862 (+)
G1614224 NA non-coding upstream 125990 32573035 ~ 32573250 (+)
G1614207 NA non-coding upstream 154799 32542491 ~ 32544441 (+)
G1614198 NA non-coding upstream 172856 32526079 ~ 32526384 (+)
G1614195 NA non-coding upstream 176094 32522925 ~ 32523146 (+)
G1614309 NA non-coding downstream 20201 32735885 ~ 32789473 (+)
G1614371 NA non-coding downstream 169268 32884952 ~ 32936564 (+)
G1614364 NA non-coding downstream 169877 32885561 ~ 32903848 (+)
G1614406 NA non-coding downstream 193321 32909005 ~ 32958271 (+)
G1614367 NA non-coding downstream 202947 32918631 ~ 32952821 (+)
G1614241 LOC106602099 other upstream 88823 32602478 ~ 32610417 (+)
timm9 timm9 other upstream 323558 32369230 ~ 32375682 (+)
G1613388 NA other upstream 964593 31730859 ~ 31780333 (+)
G1613345 LOC106602337 other upstream 1037177 31657491 ~ 31662063 (+)
G1614510 NA other downstream 394577 33110261 ~ 33110861 (+)
G1614550 NA other downstream 451946 33167630 ~ 33168890 (+)
G1614581 akap6 other downstream 496173 33211857 ~ 33215968 (+)
G1614744 NA other downstream 816152 33531836 ~ 33533452 (+)
G1614761 NA other downstream 866328 33582012 ~ 33583350 (+)

Expression


Co-expression Network