LOC110497685 (LOC106601994)


Basic Information

Item Value
gene id LOC110497685
gene name LOC106601994
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 32715876 ~ 32723719 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021573963.2
AGCGCAAATCGGAAGTAATGTGAAATATCAGGAAGTAAGCTACAAGGTCCTGGCGACGAAGCTTTATAAAGTTTACACCTTTGTTTACCTTTACTTCGACCGTTCTCGTAACTTCATTTGCTAGCTAGAATTCATAAAATACAAAATGAACAGACAAGTAGAGTATGATTCATATGAGATAGAGGAGCCAAGTGATGAAGAAAGAGCTGAGGACAGCTCTGAGGATGAACTGGATGTGCTCTTGAACGGGACCCCGGATCAGAAGAGGAAGCTCATCCGAGAATACTTGACTGGGGAGAGTGAGTCCTCCAGTGGGGATGAGtttgagaaagagatggaggcaGAGCTCAGCACCACCATCAAGACTATGGAGTGCAAATGGGCGCCACCTACAGCACCAGCAGGAGAGGCTTTGGGTACCAATGACAATGCTGCAACACCTGGGTTACCACAGCCAGAGCTTTATGACAATGTTTATTTTGACTCTGATTCCGACGAGGAGGAAACTGCTCCAAGCAGTTCCTCGGGTCAGAGACGCAGGAAACAGCGATCCATCCCCACAAACGATGAACTACTGTACGACCCGGATGAGGATGACCGGGATCAGGCATGGGTGGACGCCAAGAGGAGGAGGTACAACGAAAAGAGAAGATTGCAATCTTCACGAAACAGAAGAGGGCAGTCCCAGGGGCTTCCAAGCAGCGATGCTGTCCTTAACTGCCCAGCATGCATGACCACGCTGTGCCTCGACTGTCAAAGGCATGACAAATACAGGACCCAATACAGAGCCATGTTTGTCATGAATTGtacagtaaacaaagaggagaTTTTACGGTACAAAACGCTCAATGAGAAAAATCTGAGGAGCAGAAAGAGGAGGAAAGGGCGTCAACCAGAGCCAACAGCGTCAACCACAATGGAAGCCACAGATTCAGGAGCAGTGTTGGGGATGGGCGGAGAGGAGATCTACCATCCTGTTCAGTGTACGGAGTGCTCCACTGAGGTGGCAGTGCTCGATAAGGACGAGGTCTACCACTTTTTTAACATCCTCGCCAGCCACTGCTGAAGATACACTGTTGCGATATCCCTGATAAGACTTTTGGTGTCTGAATGTACATCATTTTATGGTATTAGACAGGGGTGTAAAGATCATGTAAAGATTTGATGTACAAGCATTGGCCTCCAACATTTTATTAAGTTTACCCCTATGGTatttattctgtttttttttataggtACAACCAAAGATTTGTATATCTtcacactgtactgtctttggttAGGGtatggacgtcccaaggattccgGATCGCAATAACCGTTTGTAAATCTGATTAGAGTCGGGACAGGAAGTGGAAACCGCCCTTTGCGCGTCGCTTTTTCATGTGATTTGAGATTGGTTGAGAAAGAAAGCCGTTAAACATCACTGGGGGGATTAATCTGCACCGGTTGACGGTTGATTGCATTCGTTTTGGAACCGGGCTGCCTCCTGGATGTGAGCTAGGTGCCCTGTTCGAAGCCCACGGATATTTGGCTCAAAACAAAAGGGACGTAATTGGCATGTTGAGGATAGAGTCGATTCTGTGAtttcacatgcaaaagtgattgcttttaTCTACCAAGAAATAATCGGCAATCACAAAAAATACAGAATAAATACAACTTCAAGTTATGGCGTTTTGAAGTTATCTGGAAGAAAATATCCTGGTTGTGTTACCGGTATATTCTCGTAACGGCTTTATACATGTTGAAGCCTTGGGTGAGAACCATCTTCAgtatcctttttggttccagaatAGTTTGAAAATAACTAGGCTACTAGATATTTTAGCCGGATAGATAAGTAACTACTACCCCTTGCCTTGTAATTTCGAATTGTTAGCAAGTAGCCTATTTGTTGGTTAACATTTTATTGCTGAACAGTAGACTATGAAACGATAACAGTAGGCTATAGCTACTAGCTTAGGTGGTCACAGTGTAGCCTACTAttggtgcattcaagacaactcgGTAATATCTGACATAAAAACTCGTAGAAAGATGAGGCCAGGGTTTTCCACTTGGTCAAATCCCGACATCAGTGATCAGGTTGTAAAggggagctctagaaagatgccagagtttccaagttggatgacctttccaaacgtttttttttcttcagtcgTGGCtcgttttttcagagttcccagttgttttgaatgcggcatcTGTCGCACCTGCAGGCCTAAACGTGTGCATGCGCAACTATTGAGAATTGTAGAACTCCGATCTCATGGATTTCAAATATTATTTTAATCAGCTTTATCTGGCATAAAAAGTGCATGTGTAGACCTCATGTAGCCTGCAGTCATTGGTGTAGACTGATTTGATATGTTAGGCTACTCAAGTAAGTTGGAAACTGCTCAAAAAGAGGTGAGGAAGATATGACTATCAAAATAGGCTACTGTTGATCACAACACTGAACAATTATGACTGAAGAATGATTTTATCCCTTTCATAGGCCTGATAAGCAGTgttgtcttttttttatttttttttagcagtggtgtgtattcatggatgccaagggaagccaggctccccccaaaaatgtaccaATAAAAATTCAAAACATAAATAGTT
>XM_036954669.1
TCGTCCAATGCAAGCATGGTTGCTGGTGATGCTATCTACTTAACCTCTGAGGATGAACTGGATGTGCTCTTGAACGGGACCCCGGATCAGAAGAGGAAGCTCATCCGAGAATACTTGACTGGGGAGAGTGAGTCCTCCAGTGGGGATGAGtttgagaaagagatggaggcaGAGCTCAGCACCACCATCAAGACTATGGAGTGCAAATGGGCGCCACCTACAGCACCAGCAGGAGAGGCTTTGGGTACCAATGACAATGCTGCAACACCTGGGTTACCACAGCCAGAGCTTTATGACAATGTTTATTTTGACTCTGATTCCGACGAGGAGGAAACTGCTCCAAGCAGTTCCTCGGGTCAGAGACGCAGGAAACAGCGATCCATCCCCACAAACGATGAACTACTGTACGACCCGGATGAGGATGACCGGGATCAGGCATGGGTGGACGCCAAGAGGAGGAGGTACAACGAAAAGAGAAGATTGCAATCTTCACGAAACAGAAGAGGGCAGTCCCAGGGGCTTCCAAGCAGCGATGCTGTCCTTAACTGCCCAGCATGCATGACCACGCTGTGCCTCGACTGTCAAAGGCATGACAAATACAGGACCCAATACAGAGCCATGTTTGTCATGAATTGtacagtaaacaaagaggagaTTTTACGGTACAAAACGCTCAATGAGAAAAATCTGAGGAGCAGAAAGAGGAGGAAAGGGCGTCAACCAGAGCCAACAGCGTCAACCACAATGGAAGCCACAGATTCAGGAGCAGTGTTGGGGATGGGCGGAGAGGAGATCTACCATCCTGTTCAGTGTACGGAGTGCTCCACTGAGGTGGCAGTGCTCGATAAGGACGAGGTCTACCACTTTTTTAACATCCTCGCCAGCCACTGCTGAAGATACACTGTTGCGATATCCCTGATAAGACTTTTGGTGTCTGAATGTACATCATTTTATGGTATTAGACAGGGGTGTAAAGATCATGTAAAGATTTGATGTACAAGCATTGGCCTCCAACATTTTATTAAGTTTACCCCTATGGTatttattctgtttttttttataggtACAACCAAAGATTTGTATATCTtcacactgtactgtctttggttAGGGtatggacgtcccaaggattccgGATCGCAATAACCGTTTGTAAATCTGATTAGAGTCGGGACAGGAAGTGGAAACCGCCCTTTGCGCGTCGCTTTTTCATGTGATTTGAGATTGGTTGAGAAAGAAAGCCGTTAAACATCACTGGGGGGATTAATCTGCACCGGTTGACGGTTGATTGCATTCGTTTTGGAACCGGGCTGCCTCCTGGATGTGAGCTAGGTGCCCTGTTCGAAGCCCACGGATATTTGGCTCAAAACAAAAGGGACGTAATTGGCATGTTGAGGATAGAGTCGATTCTGTGAtttcacatgcaaaagtgattgcttttaTCTACCAAGAAATAATCGGCAATCACAAAAAATACAGAATAAATACAACTTCAAGTTATGGCGTTTTGAAGTTATCTGGAAGAAAATATCCTGGTTGTGTTACCGGTATATTCTCGTAACGGCTTTATACATGTTGAAGCCTTGGGTGAGAACCATCTTCAgtatcctttttggttccagaatAGTTTGAAAATAACTAGGCTACTAGATATTTTAGCCGGATAGATAAGTAACTACTACCCCTTGCCTTGTAATTTCGAATTGTTAGCAAGTAGCCTATTTGTTGGTTAACATTTTATTGCTGAACAGTAGACTATGAAACGATAACAGTAGGCTATAGCTACTAGCTTAGGTGGTCACAGTGTAGCCTACTAttggtgcattcaagacaactcgGTAATATCTGACATAAAAACTCGTAGAAAGATGAGGCCAGGGTTTTCCACTTGGTCAAATCCCGACATCAGTGATCAGGTTGTAAAggggagctctagaaagatgccagagtttccaagttggatgacctttccaaacgtttttttttcttcagtcgTGGCtcgttttttcagagttcccagttgttttgaatgcggcatcTGTCGCACCTGCAGGCCTAAACGTGTGCATGCGCAACTATTGAGAATTGTAGAACTCCGATCTCATGGATTTCAAATATTATTTTAATCAGCTTTATCTGGCATAAAAAGTGCATGTGTAGACCTCATGTAGCCTGCAGTCATTGGTGTAGACTGATTTGATATGTTAGGCTACTCAAGTAAGTTGGAAACTGCTCAAAAAGAGGTGAGGAAGATATGACTATCAAAATAGGCTACTGTTGATCACAACACTGAACAATTATGACTGAAGAATGATTTTATCCCTTTCATAGGCCTGATAAGCAGTgttgtcttttttttatttttttttagcagtggtgtgtattcatggatgccaagggaagccaggctccccccaaaaatgtaccaATAAAAATTCAAAACATAAATAGTT

Function

NR:

description
E2F-associated phosphoprotein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021573963.2 False 2625 mRNA 0.43 6 32715876 32723719
XM_036954669.1 True 2453 mRNA 0.44 6 32716161 32723719

Neighbor

gene id symbol gene type direction distance location
LOC110497684 LOC106602024 coding upstream 192 32699240 ~ 32715684 (+)
cfl2 LOC106602033 coding upstream 22764 32687789 ~ 32693112 (+)
baz1a LOC106602003 coding upstream 28301 32640559 ~ 32687575 (+)
zgc:109986 NA coding upstream 76699 32633625 ~ 32639177 (+)
sstr1a sstr1 coding upstream 173981 32540480 ~ 32541895 (+)
LOC110497687 egln3 coding downstream 19802 32707637 ~ 32750947 (+)
dtd2 dtd2 coding downstream 698558 33422277 ~ 33423351 (+)
heatr5a heatr5a coding downstream 724589 33448308 ~ 33474231 (+)
hectd1 hectd1 coding downstream 752743 33421162 ~ 33504862 (+)
strn3 LOC106601852 coding downstream 784689 33508408 ~ 33536119 (+)
G1614224 NA non-coding upstream 142626 32573035 ~ 32573250 (+)
G1614207 NA non-coding upstream 171435 32542491 ~ 32544441 (+)
G1614198 NA non-coding upstream 189492 32526079 ~ 32526384 (+)
G1614195 NA non-coding upstream 192730 32522925 ~ 32523146 (+)
G1614309 NA non-coding downstream 12166 32735885 ~ 32789473 (+)
G1614371 NA non-coding downstream 161233 32884952 ~ 32936564 (+)
G1614364 NA non-coding downstream 161842 32885561 ~ 32903848 (+)
G1614406 NA non-coding downstream 185286 32909005 ~ 32958271 (+)
G1614367 NA non-coding downstream 194912 32918631 ~ 32952821 (+)
G1614241 LOC106602099 other upstream 105459 32602478 ~ 32610417 (+)
timm9 timm9 other upstream 340194 32369230 ~ 32375682 (+)
G1613388 NA other upstream 981229 31730859 ~ 31780333 (+)
G1613345 LOC106602337 other upstream 1053813 31657491 ~ 31662063 (+)
G1614510 NA other downstream 386542 33110261 ~ 33110861 (+)
G1614550 NA other downstream 443911 33167630 ~ 33168890 (+)
G1614581 akap6 other downstream 488138 33211857 ~ 33215968 (+)
G1614744 NA other downstream 808117 33531836 ~ 33533452 (+)
G1614761 NA other downstream 858293 33582012 ~ 33583350 (+)

Expression


Co-expression Network