LOC110497687 (egln3)


Basic Information

Item Value
gene id LOC110497687
gene name egln3
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 32707637 ~ 32750947 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021573964.2
TATATGCAGGTGCCTCTCATTCGCTGCTTCTTTACACTTTGTTGCAGAACAGAACTCTTGTGAAATTGCGTCTCTTAAGAATATATTGTACTCGTTTCTGCAGAGCGAGAAGGGCTGAATTATTGAAACATATGTATCAGTGAGCCTAACGCACTGACACTATCGTGGCAGTTTCAGTAACATAACTTTAGAAGCTTAGTTAAATTCTTTATAAATCGCGAAAATGCCTCTTCTGCAACATGCATTGGACACAGACTTGGAGCGGTTAGCCCTGGACCTGATTGTCCCGTCCCTACTTGACCAAGGATTCTTTTACGTGGATAACTTCCTAGGAGAATTGGTTGGACACTTTGTTTTGGACCAAGTGAAAGAGCTGCACAGCTCTGGAGTTCTGCAGGACGGACAGCTAGCTGGTCCTGACCGGAGTTGTGGGATTTCCAAAAGGAACATTCGGGGTGACAAGATAGCCTGGGTCAGTGGAGTTGAAAGAGGGTGCGAGGCTATTAACATCCTCCTTACCTTAATCGATAAGTTGGTTACTCATTGCATCGGCCGACTTGGGAAAAGTATTATTCGAGAAAGATCAAAGGCGATGGTGGCGTGCTATCCAGGAAATGGGACGGGATATGTTAAACATGTGGACAATCCCAACGCTGACGGTCGCTGTGTCACCTGTATCTACTACCTGAACAAGAACTGGAACGCAGAGGAGCATGGAGGAATTCTTAGGATTTTTCCTGAGGGCAAATCCTACGTTGCCGATGTTGAGCCCCTGTTTGACAGACTGTTGTTCTTCTGGTCAGATAGAAGGAATCCACACGAGGTGCTGCCGTCATATGCAACAAGATAtgctgtaacagtgtggtatTTTGATTCAGAAGAAAGAGCAGAGGCGAAGAGACGGTTCAGAGACTTAACAGCCTCCACTCAGGACCAGGACAGAAGAACCATGAAGAACTGTGACCTTTAGAGACTCCATCTTGTGTGACACAATAGAAGAATGAATCTCAAATCCTTCGTGCTGACTGAGAGTTTTCACACTTTGATCTAATCACTGTTTGGATTTGGGTATCTCTTCTAAAAGCTACAAAGATGTGTGCTTGATGGCTTTGTACATTATTTTTCTATTAAATTATTTGCTGCTCTTTCAATAACCAGGGTACTCATTACTGTTTTTAAACCCAAGTGTCCTGGATCAACCCAAATAACACTGTACTACTTCTTGAAATGTCTTCATCCTCCTGAGACCCAGCAATTCATTtctgtccactctaatggacagTAATTGTTGATCCCTATCTCTGAGGCCATACATGCCACTGTGTTAAGTCCTGTTGTAACTCTGAGAGGACATTCTGGGCTTTTCAATGATATCACATGTTTTGGGGGTGGGACTTTTTAACGTTTTCTTGTTgtattttcaaaatgtttttttacctACTGTAGAGGCTTCAGACAACACCCAACATTCTAAAATAGGCCACTTCTATACTCTTTTACAGGCACGGTTCTAATGCATTTTCCCCCTAGATTAGTTATTGTTCTTGTtgcaaatcaaatgtattacTCAAGTTTTTAGTATACAATTTGGCTAAGCTGTAATTAAAATGTGTGCATATAAAGATTAAGCTGACAATGTCATGTTGAAAagcacaaaaccaaaatggacaCCTGTTGTGGCTCAAAGACATTGTCACATCGTATATCTTGTTTTAAGTTGGTAATAACATCTGGAGTATTCAAGGGTGCATCTCAAACGGTGACCTACTTCCTATGTGGTACAGAGTTTTAGATCATCCAAGTCCTTACGAATTTATTACATGTCAACAATCGTTATAACTGGTTGAGTAGTTATGAGTGACTCCCAGCACTTCTGTCATTATTGATCGCTCTGAACAGATGTCTTCGACATTAACTGCAGGTTGTTTGAGAAGCTTCTGTATACACCTTGTGAGAAGAAATCAATGATAGATTGCAACTTTCAAAGCTTCACAGATATACAGCACTTGTATTGTTGGCTGTAAATGATTTTAGTGCTTAAAATCGGCTTGTATGCTGGTGGATATAGCCTACGATGAATAAGAGTGGTGTTGTAAAATGTTTGTTtcaaacaaaataaaatattttttaaccTGA
>TU1847565
cttttgacaaAGTTTTAGATCATCCAAGTCCTTACGAATTTATTACATGTCAACAATCGTTATAACTGGTTGAGTAGTTATGAGTGACTCCCAGCACTTCTGTCATTATTGATCGCTCTGAACAGATGTCTTCGACATTAACTGCAGGTTGTTTGAGAAGCTTCTGTATACACCTTGTGAGAAGAAATCAATGATAGATTGCAACTTTCAAAGCTTCACAGATATACAGCACTTGTATTGTTGGCTGTAAATGATTTTAGTGCTTAAAATCGGCTTGTATGCTGGTGGATATAGCCTACGATGAATAAGAGTGG

Function

symbol description
egln3 Predicted to enable ferrous iron binding activity and peptidyl-proline 4-dioxygenase activity. Predicted to be involved in cellular response to hypoxia and peptidyl-proline hydroxylation to 4-hydroxy-L-proline. Predicted to be active in cytoplasm and nucleus. Is expressed in axial mesoderm; liver; margin; and neural plate. Human ortholog(s) of this gene implicated in renal cell carcinoma. Orthologous to human EGLN3 (egl-9 family hypoxia inducible factor 3).

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016706 2-oxoglutarate-dependent dioxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0031418 L-ascorbic acid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021573964.2 False 2136 mRNA 0.41 5 32743521 32750947
TU1847565 True 314 lncRNA 0.37 2 32707637 32750899

Neighbor

gene id symbol gene type direction distance location
LOC110497685 LOC106601994 coding upstream 19802 32715876 ~ 32723719 (+)
LOC110497684 LOC106602024 coding upstream 27837 32699240 ~ 32715684 (+)
cfl2 LOC106602033 coding upstream 50409 32687789 ~ 32693112 (+)
baz1a LOC106602003 coding upstream 55946 32640559 ~ 32687575 (+)
zgc:109986 NA coding upstream 104344 32633625 ~ 32639177 (+)
dtd2 dtd2 coding downstream 671330 33422277 ~ 33423351 (+)
heatr5a heatr5a coding downstream 697361 33448308 ~ 33474231 (+)
hectd1 hectd1 coding downstream 725515 33421162 ~ 33504862 (+)
strn3 LOC106601852 coding downstream 757461 33508408 ~ 33536119 (+)
prkd1 prkd1 coding downstream 859945 33610892 ~ 33728505 (+)
G1614224 NA non-coding upstream 170271 32573035 ~ 32573250 (+)
G1614207 NA non-coding upstream 199080 32542491 ~ 32544441 (+)
G1614198 NA non-coding upstream 217137 32526079 ~ 32526384 (+)
G1614195 NA non-coding upstream 220375 32522925 ~ 32523146 (+)
G1614371 NA non-coding downstream 134005 32884952 ~ 32936564 (+)
G1614364 NA non-coding downstream 134614 32885561 ~ 32903848 (+)
G1614406 NA non-coding downstream 158058 32909005 ~ 32958271 (+)
G1614367 NA non-coding downstream 167684 32918631 ~ 32952821 (+)
G1614372 NA non-coding downstream 170205 32921152 ~ 32922852 (+)
G1614241 LOC106602099 other upstream 133104 32602478 ~ 32610417 (+)
timm9 timm9 other upstream 367839 32369230 ~ 32375682 (+)
G1613388 NA other upstream 1008874 31730859 ~ 31780333 (+)
G1613345 LOC106602337 other upstream 1081458 31657491 ~ 31662063 (+)
G1614510 NA other downstream 359314 33110261 ~ 33110861 (+)
G1614550 NA other downstream 416683 33167630 ~ 33168890 (+)
G1614581 akap6 other downstream 460910 33211857 ~ 33215968 (+)
G1614744 NA other downstream 780889 33531836 ~ 33533452 (+)
G1614761 NA other downstream 831065 33582012 ~ 33583350 (+)
sstr1a sstr1 coding upstream 165742 32540480 ~ 32541895 (+)
ttc6 ttc6 coding upstream 172832 32507326 ~ 32534805 (+)

Expression


Co-expression Network