nubpl (nubpl)


Basic Information

Item Value
gene id nubpl
gene name nubpl
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 33413220 ~ 33422265 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021573972.2
TGGGGTTTCTGGTAGAGGATGTTGCACCCATTGTCTGGAGGGGCCTGATGGTGATGTCAGCTATAGAGAAGCTACTTAGACAGGTGGGAGAGACTGATCGTTCATGTACGCTGACCTCCAAAGGCAAAGTGCGGTAGATTGGGGACTGCTGGACTACCTGGTTATTGACATGCCACCTGGGACTGGAGATGTTCAGTTATCAATCACTCAGAACGTCCCAATAGCAGGGGCAGTGATCGTGTCCACTCCTCAGGATATTGCCTTGCTGGATGCACGCAGAGGAGCAGAAATGTTCAGAAAGGTCAATGTACCGGTCCTGGGCATAGTCCAGAATATGAGCGTGTTTCAGTGCCCCAAGTGTAACCACCAGACCCACATCTTTGGGGCAGATGGAGCAAGGGCCCTTGCTGATACTCTGGGAGTGCAAGTATTGGgaGACATTCCTCTACACCTGAGCATCAGAGAGATGTCAGACAGAGGCCAGCCTGTAGTGGTGTCCTCACCTGACAGCCCTGAGGCTGAGGCCTACAGAAAGGTGGCGACTGCCGTGGTCCAGCGTCTAGAAGAACTCTCTGGTTGAGTTATTGCCCTCTACTGTGTAGGACAACTGGACAACTCGTCATCTACAGGAgattcagtgcattcggaaagtattcagaccccttgactttttccacattttgttattctaaaatggattaaatagtttttttcccgaAGTTTTTTTcccgagac
>XM_036954680.1
CTTGACCAATAACCTAGTTTTTCTATGGCAATAACACAAGATGGCtcactgtagctacagtaaaTTCTCACATTTATTAAAATTAACAACCGCTAACCTAAATAAACCAACAGTGTTACGGACAGGGAGAGACATTCAATATGCTCCACAACGCTGCAAATATTTCATACGTTTTCATAAGACCTCAGGTCCTGAGAGATCGTTGCAGGAGAGACAGAAGCAGCACATGGCTCGTGGCTTGCCCAAACAAAAGCCCATTGCTGGAGTGAAACAAGTTATTGTGGTGGCCTCAGGGAAGGGGGGTGTTGGGAAATCAACCACTGCAGTGAATTTGGCCCTTGGACTCACAGCTAATGATCCAAGTAAAACTGTGGGCATCTTAGACGCTGATGTTTACGGTCCCTCAATTCCTAAGCTGATGAGCCTGAAGGGGAACCCAGAACTAACTGACAACAACCTAATGAGACCACTTATGAATTTTGGGATTCCTTGTATGTCCATGGGGTTTCTGGTAGAGGATGTTGCACCCATTGTCTGGAGGGGCCTGATGGTGATGTCAGCTATAGAGAAGCTACTTAGACAGGTGGGAGAGACTGATCGTTCATGTACGCTGACCTCCAAAGGCAAAGTAGATTGGGGACTGCTGGACTACCTGGTTATTGACATGCCACCTGGGACTGGAGATGTTCAGTTATCAATCACTCAGAACGTCCCAATAGCAGGGGCAGTGATCGTGTCCACTCCTCAGGATATTGCCTTGCTGGATGCACGCAGAGGAGCAGAAATGTTCAGAAAGGTCAATGTACCGGTCCTGGGCATAGTCCAGAATATGAGCGTGTTTCAGTGCCCCAAGTGTAACCACCAGACCCACATCTTTGGGGCAGATGGAGCAAGGGCCCTTGCTGATACTCTGGGAGTGCAAGTATTGGgaGACATTCCTCTACACCTGAGCATCAGAGAGATGTCAGACAGAGGCCAGCCTGTAGTGGTGTCCTCACCTGACAGCCCTGAGGCTGAGGCCTACAGAAAGGTGGCGACTGCCGTGGTCCAGCGTCTAGAAGAACTCTCTGGTTGAGTTATTGCCCTCTACTGTGTAGGACAACTGGACAACTCGTCATCTACAGGAgattcagtgcattcggaaagtattcagaccccttgactttttccacattttgttattctaaaatggattaaatagtttttttcccgaAGTTTTTTTcccgagac
>XM_021573970.2
CTTGACCAATAACCTAGTTTTTCTATGGCAATAACACAAGATGGCtcactgtagctacagtaaaTTCTCACATTTATTAAAATTAACAACCGCTAACCTAAATAAACCAACAGTGTTACGGACAGGGAGAGACATTCAATATGCTCCACAACGCTGCAAATATTTCATACGTTTTCATAAGACCTCAGGTCCTGAGAGATCGTTGCAGGAGAGACAGAAGCAGCACATGGCTCGTGGCTTGCCCAAACAAAAGCCCATTGCTGGAGTGAAACAAGTTATTGTGGTGGCCTCAGGGAAGGGGGGTGTTGGGAAATCAACCACTGCAGTGAATTTGGCCCTTGGACTCACAGCTAATGATCCAAGTAAAACTGTGGGCATCTTAGACGCTGATGTTTACGGTCCCTCAATTCCTAAGCTGATGAGCCTGAAGGGGAACCCAGAACTAACTGACAACAACCTAATGAGACCACTTATGAATTTTGGGATTCCTTGTATGTCCATGGGGTTTCTGGTAGAGGATGTTGCACCCATTGTCTGGAGGGGCCTGATGGTGATGTCAGCTATAGAGAAGCTACTTAGACAGGTAGATTGGGGACTGCTGGACTACCTGGTTATTGACATGCCACCTGGGACTGGAGATGTTCAGTTATCAATCACTCAGAACGTCCCAATAGCAGGGGCAGTGATCGTGTCCACTCCTCAGGATATTGCCTTGCTGGATGCACGCAGAGGAGCAGAAATGTTCAGAAAGGTCAATGTACCGGTCCTGGGCATAGTCCAGAATATGAGCGTGTTTCAGTGCCCCAAGTGTAACCACCAGACCCACATCTTTGGGGCAGATGGAGCAAGGGCCCTTGCTGATACTCTGGGAGTGCAAGTATTGGgaGACATTCCTCTACACCTGAGCATCAGAGAGATGTCAGACAGAGGCCAGCCTGTAGTGGTGTCCTCACCTGACAGCCCTGAGGCTGAGGCCTACAGAAAGGTGGCGACTGCCGTGGTCCAGCGTCTAGAAGAACTCTCTGGTTGAGTTATTGCCCTCTACTGTGTAGGACAACTGGACAACTCGTCATCTACAGGAgattcagtgcattcggaaagtattcagaccccttgactttttccacattttgttattctaaaatggattaaatagtttttttcccgaAGTTTTTTTcccgaga

Function

symbol description
nubpl Predicted to enable 4 iron, 4 sulfur cluster binding activity. Predicted to be involved in iron-sulfur cluster assembly and mitochondrial respiratory chain complex I assembly. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in nuclear type mitochondrial complex I deficiency 21. Orthologous to human NUBPL (nucleotide binding protein like).

NR:

description
iron-sulfur protein NUBPL isoform X1

GO:

id name namespace
GO:0005524 ATP binding molecular_function

KEGG:

id description
K03593 mrp, NUBPL; ATP-binding protein involved in chromosome partitioning

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021573972.2 False 735 mRNA 0.50 5 33413220 33419007
XM_036954680.1 False 1230 mRNA 0.47 10 33413220 33422265
XM_021573970.2 True 1184 mRNA 0.47 10 33413221 33422265

Neighbor

gene id symbol gene type direction distance location
LOC110497690 arhgap5 coding downstream 11580 33364463 ~ 33401640 (-)
akap6 akap6 coding downstream 51821 33167743 ~ 33361399 (-)
LOC110497688 npas3 coding downstream 251324 32770921 ~ 33161896 (-)
srp54 LOC106602043 coding downstream 785166 32618859 ~ 32628054 (-)
sec23a sec23a coding downstream 795185 32591472 ~ 32618035 (-)
ap4s1 ap4s1 coding upstream 82589 33504854 ~ 33509361 (-)
coch coch coding upstream 113992 33536257 ~ 33541969 (-)
opn6b LOC106602743 coding upstream 124534 33546799 ~ 33555237 (-)
scfd1 scfd1 coding upstream 133202 33555467 ~ 33578230 (-)
g2e3 g2e3 coding upstream 161381 33583646 ~ 33605594 (-)
G1615801 NA non-coding downstream 1088 33411815 ~ 33412132 (-)
G1615838 NA non-coding downstream 2551 33410366 ~ 33410669 (-)
G1615717 NA non-coding downstream 86268 33239467 ~ 33326952 (-)
G1615760 NA non-coding downstream 111522 33301275 ~ 33301698 (-)
G1615692 NA non-coding downstream 206262 33206684 ~ 33206958 (-)
G1615889 NA non-coding upstream 149946 33572211 ~ 33618437 (-)
G1615982 prkd1 non-coding upstream 305030 33727295 ~ 33728492 (-)
G1616007 NA non-coding upstream 346523 33768788 ~ 33769027 (-)
G1616009 NA non-coding upstream 349612 33771877 ~ 33772112 (-)
G1616027 NA non-coding upstream 376641 33798906 ~ 33799128 (-)
G1615793 NA other downstream 3 33412219 ~ 33413217 (-)
G1615357 LOC106602003 other downstream 755451 32650926 ~ 32657769 (-)
G1615240 NA other downstream 951641 32458530 ~ 32461579 (-)
fbxo34 fbxo34 other downstream 1350726 32013186 ~ 32062575 (-)
G1615810 hectd1 other upstream 56328 33478593 ~ 33479436 (-)
LOC110498336 LOC106611177 other upstream 1970595 35392412 ~ 35396783 (-)
G1619119 NA other upstream 2979289 36401554 ~ 36405336 (-)
LOC110497753 spred1 other upstream 3232258 36654523 ~ 36840800 (-)
G1622757 LOC106600509 other upstream 5534759 38957024 ~ 38958974 (-)

Expression


Co-expression Network