strn3 (LOC106601852)


Basic Information

Item Value
gene id strn3
gene name LOC106601852
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 33508408 ~ 33536119 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036954681.1
ctctcccacccccggCAGTAAGGAGGCTTTCATATCCAACTCCAAGGATTGGACTAATGGCGGCCAACATATCTTTACGCTGAGAGTAAATCCAAAACATAGCCCTGTCTCACTACAACCGCATAGCCATTTCAGTGAAAGGCATCGTCAAATTCATACGGGAACACTGATCTGAAAAGGGGGAGGGAAGGCGAATTCAAGCAGCAAATTGTGCTGGGACTTTCCTCTTCTTAAAAATGGATGAACACCCCGGCGGAGGAGTTGGAATGGCCGCCTCAAGACAGCAGCAGGGGAATAACAACGTTAATCCCCAAATCGGTAGTGGAGGTGGCTCAGGGATGGGGCAGCAGCAAGACGACATACCACGGCCACAGCAATATACCATCCCCGGTATTTTACATTACATCCAGCACGAATGGGCCCGATTCGAAATGGAGAGAGCTCATTGGGAAGTGGAGAGGGCCGAACTTCAGgCTCGAATAGCATTCCTACAAGGAGAAAGGAAAGGTCAAGAGAATGTAAAGAATGATCTAGTTAGAAGAATAAAGATGTTAGAATATGCATTAAAGCAAGAAAGAGCAAAATACCATAAATTAAAATATGGAACAGAATTAAATCAAGGTGAAGTTAAGATGCCTAACTTTGAACCAGAAGATACCAAAGACACAGAGGTCCCTGCTGTACCCCAGAACAGTCAGCTGACGTGGAAACAGGGCAGACAGCTCCTCAGACAATATCTTCAGGAAGTAGGTTACACGGACACAATACTAGATGTGCGGTCTCAGAGAGTGCGTTCGTTACTGGGCCTATCCGGCTCGGAGCAGAACGGCTCTGTGGAAAACAAGAACCTGGAGCTGATCCTCAACGGAGGGGAGTCTCCAGCCAAACCAAAGGGACAAGATATGAAAAGGAATCCAGGAGACGTTCTGGAAACATTTAACTTCTTAGAAAACACAGACGACAGTGACGAAGATGACGATGAGGAGGGAGACCTGATGGAGGATATAGACAGCGGCAAACACACAATAAAAAAACACAAGATAAAGGTTGGGAACGAGGGCCTGGCCTCTGACCTTCCAGACGATCCCGACACGGAGGAGGCTCTGAAGGAGTTTGACTTTCTGGTGAATGCCgaggatggagagggagcaggggaggcCAGGAGTTCAGGGGATGGGACCGAATGGGCCGAGCCCTTACCGTTTCCCTCAGGCGGGGGCAAGTCCTTTATCATTGGCTCTGATGACGTGTTGGAGAGTTTCCTGGGCCTGGGAGACCTGGCTGACCTCACCGTCTCCAACGATGAGGCTGACTACAGCTATGATCTGCCAGCCAATAAGGACACGTTCAGGAAGACGTGGAATCCCAAGTACACCCTGCGCAGCCACTTTGACGGGGTCAGGGCTCTGGCCTTCCATCCTGTAGAGCCTGTCCTGGTCACCGTGTCTGAGGACCACACACTCAAACTGTGGAACCTACAGAAGACCGTACCTGCCAAAAAAAGTGCCTATTTCGATGTGGAGCCCATTTACACATTCAGAGCCCATGTTGGGCCTGTGCTGTCCCTGGCTATGACCTCCAGTGGAGAGCAGTGTTACAGTGGAGGGATTGACCACACAATACAGTGGTGGAACATCCCCAGCTCCAACGTGGACCCTTATGACACCTACGACCCCAGCGTCCTGGCTGGAACCTGGCTGGGCCACACTGACGCTGTGTGGGGGCTGGCCTACAGTGGCATCAAGAACCGCCTGCTGTCCTGCTCCGCAGACGGAACCGTCAAGCTGTGGAACCCCCAGGAGAAGAACCCATGCATCAGCACTTACAACGCAGAGAAAGaacaCGGCATCCCCACGGCGGTGGACTTCAATGGCTGTGACCCCGCCCACATGGTGGCGTCCTTCAACACGGGCAACGCTGTGATCTATGACCTGGAGACGTCCCAGGCTGCCGTGGTGTTCGCCGGTCAGGGGGAGAACACTCTGCCTGGAGCCAACCACATCAATAAGGTAGTGAGTCACCCCACCCTGCCTGTCACCATCACGGCCCATGAGGACAGGGACATCAAGTTCTTTGACAATAAATCAGGTAAAGTGATCCATGCGATGGTGGCCCACCTGGATGCTGTCACCAGCCTGGCTGTGGACCCCAACGGGATCTACCTGATGTCAGGAAGCCACGACTGTTCAATCCGCCTGTGGAACCTGGACAGTAAGACCTGTGTGCAGGAGATCACTGCCCACCGCATGAAGTCGGACGAGTCCATCTATGACGTTGCCTTCCACCCGTCTAAGGCATACATAGCAAGTGCGGGGGCCGACGCCCTGGCCAAAGTATTTGTGTAGTAGACAAGCTCTGCTCTGCCAGACTGAGCTGAGCGTGTAGACACAAAGAAAGAATAGACTGCTTCACTGCCTTGTGTAACAAGAGTAGCATTTTATGACACTACATTGACgctgcctccctccatccctattgAACTCTACACTTGACAGAAACCAGGTGCCAAGGGGACTTATGCCAGGCATGGTGAGTGGAGGAGCGACCAATCAGTTGTCTGTTTtcaaacacaaaaaaacatttaactgTAATTTACTGTAAGTTAAAAGCTGGAGTTAAACAAGCCAGTGTATGTAGCCTTTTGACTAGGTTTGAGCTGAGCTAAGATCTGTCCTGTAGGTATACTTCAGTGACCATGGACGGAGTGGCTGTCGTATGCGTCAGACAGTgggccgagagagagcgagaggtcgGGACTGGGTCACGTCTTTTAATCTGATTCACACAACTGGGCTGACCCCGACCATACTGAATTGGCTTAGATATGATCTTTTCACATTGTTCTTTTCACCACGTTTCCAGTGACTATGGTGGATTTGTGACCAGGCCAGTACAGCTCAGCTTGGCTCGGTTTATCTCgctagtgtgaaaagggtattgAACGAGACTTGGCCACAGCCCCTGGTGGGCCGACCGGGAGACCCTGCGGCGTGGATTCAGTTCACGCTAAACACGAGTCACAGGCGTCCCCTCAACAACCATGTAGCGAGAGAAAAATATGAATTGAAATATGTCAATCAACTTTAGCATAGGTTACATGACATttttgtgtaaaaaaatatatagtttttaTAATCCTTTTTATATAAATATAGTCTGTCATAACAGCACTGAAAAaatagtttgtttaaaaaaaaaaaagcaatatTTATTCCTGGTTTGAACCCTTCATCACAGCTCATGCTGTCCCCTACAACACTGATCTGACTTATTTTCCCCGTCACAGAAAACTCGTTGATCTCGCCCTTCCTAACCCTAGGATGCTATCTCTTACATTGCTTTGACACCGTCAGGTCACGGAAGTAAAGACTAGGACTAAAAGAAGCCCATTTTAATGGCTTCCTGAGAGCTCTTTTTAAATAAACTGCAGCATCCTATCACTATGTGATATTTTTGTACACCTTACTGTATTTGAGTTTATTTATCACAGGTTATTAGACATCTTAATAGTATTTATTTCACTTTCTGTTAGTCTTATCCGTTCAACTACAGACATGGCCCAAGGATCTCTAAGATTGGGCTCTCAAGTGAAACATATAAAATGCAATCTGATGTCAGTCTGAGGTATACGTTTGCCTTATTCTGTTAAATCACTGCTTTGAAGCAAGCATGGAGTGTAACTGTTTCTTTATTAAGGGATTGGAATAGCAAACGTAAGATTAATCACGACTCAATGTTTTGTTTGGTTGTACTATTTTCCTTTTATCTTGCAGAACTGTTTTCAAACGTACGGTGTAGCTAAGACTGTTTTGTTTCTGTCATGCATGATTAATACAATCGTCTTTTTTTCTAGACGTCCAAAAAAAGGTTCTGATCAGTTTGCGAATGTTGATGTTTTGTAAGGTTTTTGATTTACAAACTATGAATCAGCAGATTTTAAAGATTGTACCACATTCAACAGTAATGTATATAAAATGTCTATTATAAATATTAAATGGTGTA

Function

NR:

description
striatin-3

GO: NA

KEGG:

id description
K17608 STRN1_3_4; striatin 1/3/4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036954681.1 True 4002 mRNA 0.47 16 33508408 33536119

Neighbor

gene id symbol gene type direction distance location
hectd1 hectd1 coding upstream 3546 33421162 ~ 33504862 (+)
heatr5a heatr5a coding upstream 34177 33448308 ~ 33474231 (+)
dtd2 dtd2 coding upstream 85057 33422277 ~ 33423351 (+)
LOC110497687 egln3 coding upstream 757461 32707637 ~ 32750947 (+)
LOC110497685 LOC106601994 coding upstream 784689 32715876 ~ 32723719 (+)
prkd1 prkd1 coding downstream 74773 33610892 ~ 33728505 (+)
ankrd9 LOC106600996 coding downstream 436909 33973028 ~ 33974537 (+)
LOC110497711 LOC106601004 coding downstream 479305 34015424 ~ 34020874 (+)
LOC110497712 LOC106601017 coding downstream 507743 34043862 ~ 34063142 (+)
LOC110497715 NA coding downstream 545451 34080414 ~ 34087323 (+)
G1614718 NA non-coding upstream 77965 33427878 ~ 33430443 (+)
G1614704 NA non-coding upstream 95184 33412215 ~ 33413224 (+)
G1614703 NA non-coding upstream 96260 33411793 ~ 33412148 (+)
G1614698 NA non-coding upstream 103589 33404564 ~ 33404819 (+)
G1614711 NA non-coding downstream 132 33536251 ~ 33599855 (+)
G1614869 NA non-coding downstream 201344 33737463 ~ 33737736 (+)
G1614880 NA non-coding downstream 215777 33751896 ~ 33752115 (+)
G1614917 NA non-coding downstream 274899 33811018 ~ 33811316 (+)
G1614918 NA non-coding downstream 278311 33814430 ~ 33814735 (+)
G1614581 akap6 other upstream 292440 33211857 ~ 33215968 (+)
G1614550 NA other upstream 339518 33167630 ~ 33168890 (+)
G1614510 NA other upstream 397547 33110261 ~ 33110861 (+)
cfl2 LOC106602033 other upstream 817314 32687789 ~ 32693112 (+)
G1614241 LOC106602099 other upstream 897991 32602478 ~ 32610417 (+)
G1614761 NA other downstream 45893 33582012 ~ 33583350 (+)
G1614914 NA other downstream 266460 33802579 ~ 33803103 (+)
G1614998 NA other downstream 374628 33910747 ~ 33981723 (+)
G1617419 LOC106601170 other downstream 1824894 35361013 ~ 35364781 (+)
G1618036 LOC107396020 other downstream 2111579 35647698 ~ 35661845 (+)

Expression


Co-expression Network