coch (coch)


Basic Information

Item Value
gene id coch
gene name coch
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 33536257 ~ 33541969 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021573986.2
GGAGGTTCAGATGTGATCCCAGGAATACTACACACTTCCAATGAATAGCACCTTTTTCCTTCCCCCTGCAAGAATTTGCCATATGGAATCTTAGATCTCAAGGAAACCGTATTCTACAAATTGtctGTGTTTGGGTCATCATGCCAATTTTGTTTGCTGTTCTACACCTGTTAGGCATTCTGTCTATGACATGCAGAGCATCTGGATCTGACTCAAGTGttACCACCCCCATCACCTGTACGACCCGTGGGGCAGATCTGACGGAGGAGAAGCAGTTGGTCCTCTGTCCGCCTAACTGCACCCTCTGGAGGGTGTCTGTGTTTGGTTCTCGGGTGTACGCCGCCGTGTCCAGCGTGTGTGGCGCAGCCGTGCACCAGGGGGTGATAAGGTCCTCGGGGGGACCAGTGAAGGTCCACAAACTGCAAGGCATACAGAACTACCTCGGCTCCTACTCCCATGGAGTCCAATCTCAGGCCCTGTCCAGGTGGACCGCATCATTCACTGTGGCCCAATCTGTTCATGTGCCTCAGGAGGTGTCCTCCCAGATAGCCACAACTGTCCTCCCTGCACCAGGACCAGTGAAGAAAACATTAAAGAAGCCGGTGAAGAAAATGACTACAGGAGGAAATAGAGactgcCAGATGGAGATAGCCCTGCTGCTGGATAGCAGCAACAACATTGGGCAGCGTCGCTTCAACCTTCAGAAGAACTTCATCAGCAAGTTAGCGGTGATGCTAAGGATTGGACCGAATGGACCACATGTTGGTGTGGTGCAAGCTAGTGACACACCTCGGACAGAATTTCTCCTGACTAACTATACTCAACCCAAAGATGTGGTGTTTGCCATCAAAGAGGTAGCATACCTGGGAGGCAACACTAACACAGGTAAGGCCATCATGCACACGGTGGAGTCCTTCTTCCAGACGGGGGTGAGGAGAGGTCACCCCAGGGTCATAGTGGTGTTTATAGATGGCTGGCCCTCAGACGAACTGGAAGATGCGGCCGTGCTGGCCAGAGAGTCTGGTATCAACGTGTTCCTGGTGCCAGTGGCCAAGCCTGCCCTGGAGGAGCTAGGCATGGTCAGAGACAAGGACTACATGAAGAAGGCAGTGTGCAAGGACAACGGCTACTTCACATACGCCATACCCAGTTGGTTCGGCACCACCAAGCATGTGAAGCCCCTGGCCCAGAAGTTGTGCTCAGTGGACCAGCTCCTCTGCTCCAAGACCTGCTACAACTCGGTCAACCTGGGCTTCCTCATTGACGGCTCCAGCAGCGTCGGGGAGGGGAACTTCCGCCTGATCTTGGACTTCATTACCTCCGTGGCCCGTAGCTTCGACATCTCAGACATAGGGTCACGTGTTGGGGCAGTCCAGTTCACCTATGACCAGCGGATGGAGTTTAACATGTACGACTACCCAGTGAAAGATGATGCCCTCAGGGCCTTGCAGGGGATCCCCTACATGAGTGGGGGCACGGCCACGGGAGACGCCGTTGCCTACGCTACCCAGAACCTGTTCCTGGCCCGCAAGGCTGGCCCTGGGAGGAACTTCCTCATAGTGGTCACTGACGGACAGTCCTACGATGACGTCAGAGGGCCGGCCCTGGCCGCCCAGAAGGAAGGGATCACCATCTACTCTGTGGGGGTGGCCTGGGCTCCAATGGATGACCTGCAAACTATGGCGTCAGAGCCCAAGGATAGCCACACATTCTTCACCAGGGAGTTCACTGGCCTGCAGCAGTTCCAGCAGCCCCTTGTAAGGGGCATCTGCAGGGACTTCACTGAGGCCAACTAGggagaggtagcagagagaagctGTTTGGGCTTGCTGAAAACCCCAGCAAGACAGGAAACATCTAGATGGcactttattttacagtacagaaATTACCAGGTATTTACTGAGAAATAAAATGGTTACTACATAGTAATAACCTATAAATTACTTGATTGTTTCTTTGGGATTCATTCAATCAAGTGCCACTCGGCGGTTGTAAATTGTGTTGAATTCTTCAAAGTAggaatcagttttaccaaatacCAGTGCAAACACAAACAATACCGTAAAAAAATAGTGCTAGTCACTGTTCAACACAACCAGAGTACAGCAGAAGCTAACAAGGCAATAGCATTGTAGGTTCACGAGTTCTCAGAAAACTCATAGATCATCAAGTTGGATATTACCTTACTCAACTAGTATGATATCATTATTCTCAATAATAGACCATATTCATTCATAGGTTCTCAAGATGTGACTAGTTTGCACTATTCATGTTTTATCCAATGTGTATCGTAACTATAGTGAAATACGTTAAGGTAGTTTGTATTTCTTGAACAATCCAAAGCAGGCAAACCAAAAAGCACAGAAACATGTTGCCTAGAGACCAAGGTATTCCTTCGCTTTCACCCTCAACTATACAGTTATCACTTCTCTGCTTGATATGGCTTGTAGTCATATGTATGTTAGTTAAAAGGTAAGGGATGATATTTAGGGAATAAAAGTACCATTCTTTCCTAGGCCACAACTGCTGATGCTAAGCTTCTATGTTACCTACAACAGAACGCTTTCCCAAAGCCAGTTTCCCTTGTATACTGTACCATACTTATAGTACATTTGCATGTTGACCTGTACTttataaattacatttttttttatga
>XM_021573985.2
CTGGAGGTTCAGATGTGATCCCAGGAATACTACACACTTCCAATGAATAGCACCTTTTTCCTTCCCCCTGCAAGAATTTGCCATATGGAATCTTAGATCTCAAGGAAACCGTATTCTACAAATTGtctgtaagGTGTTTGGGTCATCATGCCAATTTTGTTTGCTGTTCTACACCTGTTAGGCATTCTGTCTATGACATGCAGAGCATCTGGATCTGACTCAAGTGttACCACCCCCATCACCTGTACGACCCGTGGGGCAGATCTGACGGAGGAGAAGCAGTTGGTCCTCTGTCCGCCTAACTGCACCCTCTGGAGGGTGTCTGTGTTTGGTTCTCGGGTGTACGCCGCCGTGTCCAGCGTGTGTGGCGCAGCCGTGCACCAGGGGGTGATAAGGTCCTCGGGGGGACCAGTGAAGGTCCACAAACTGCAAGGCATACAGAACTACCTCGGCTCCTACTCCCATGGAGTCCAATCTCAGGCCCTGTCCAGGTGGACCGCATCATTCACTGTGGCCCAATCTGTTCATGTGCCTCAGGAGGTGTCCTCCCAGATAGCCACAACTGTCCTCCCTGCACCAGGACCAGTGAAGAAAACATTAAAGAAGCCGGTGAAGAAAATGACTACAGGAGGAAATAGAGactgcCAGATGGAGATAGCCCTGCTGCTGGATAGCAGCAACAACATTGGGCAGCGTCGCTTCAACCTTCAGAAGAACTTCATCAGCAAGTTAGCGGTGATGCTAAGGATTGGACCGAATGGACCACATGTTGGTGTGGTGCAAGCTAGTGACACACCTCGGACAGAATTTCTCCTGACTAACTATACTCAACCCAAAGATGTGGTGTTTGCCATCAAAGAGGTAGCATACCTGGGAGGCAACACTAACACAGGTAAGGCCATCATGCACACGGTGGAGTCCTTCTTCCAGACGGGGGTGAGGAGAGGTCACCCCAGGGTCATAGTGGTGTTTATAGATGGCTGGCCCTCAGACGAACTGGAAGATGCGGCCGTGCTGGCCAGAGAGTCTGGTATCAACGTGTTCCTGGTGCCAGTGGCCAAGCCTGCCCTGGAGGAGCTAGGCATGGTCAGAGACAAGGACTACATGAAGAAGGCAGTGTGCAAGGACAACGGCTACTTCACATACGCCATACCCAGTTGGTTCGGCACCACCAAGCATGTGAAGCCCCTGGCCCAGAAGTTGTGCTCAGTGGACCAGCTCCTCTGCTCCAAGACCTGCTACAACTCGGTCAACCTGGGCTTCCTCATTGACGGCTCCAGCAGCGTCGGGGAGGGGAACTTCCGCCTGATCTTGGACTTCATTACCTCCGTGGCCCGTAGCTTCGACATCTCAGACATAGGGTCACGTGTTGGGGCAGTCCAGTTCACCTATGACCAGCGGATGGAGTTTAACATGTACGACTACCCAGTGAAAGATGATGCCCTCAGGGCCTTGCAGGGGATCCCCTACATGAGTGGGGGCACGGCCACGGGAGACGCCGTTGCCTACGCTACCCAGAACCTGTTCCTGGCCCGCAAGGCTGGCCCTGGGAGGAACTTCCTCATAGTGGTCACTGACGGACAGTCCTACGATGACGTCAGAGGGCCGGCCCTGGCCGCCCAGAAGGAAGGGATCACCATCTACTCTGTGGGGGTGGCCTGGGCTCCAATGGATGACCTGCAAACTATGGCGTCAGAGCCCAAGGATAGCCACACATTCTTCACCAGGGAGTTCACTGGCCTGCAGCAGTTCCAGCAGCCCCTTGTAAGGGGCATCTGCAGGGACTTCACTGAGGCCAACTAGggagaggtagcagagagaagctGTTTGGGCTTGCTGAAAACCCCAGCAAGACAGGAAACATCTAGATGGcactttattttacagtacagaaATTACCAGGTATTTACTGAGAAATAAAATGGTTACTACATAGTAATAACCTATAAATTACTTGATTGTTTCTTTGGGATTCATTCAATCAAGTGCCACTCGGCGGTTGTAAATTGTGTTGAATTCTTCAAAGTAggaatcagttttaccaaatacCAGTGCAAACACAAACAATACCGTAAAAAAATAGTGCTAGTCACTGTTCAACACAACCAGAGTACAGCAGAAGCTAACAAGGCAATAGCATTGTAGGTTCACGAGTTCTCAGAAAACTCATAGATCATCAAGTTGGATATTACCTTACTCAACTAGTATGATATCATTATTCTCAATAATAGACCATATTCATTCATAGGTTCTCAAGATGTGACTAGTTTGCACTATTCATGTTTTATCCAATGTGTATCGTAACTATAGTGAAATACGTTAAGGTAGTTTGTATTTCTTGAACAATCCAAAGCAGGCAAACCAAAAAGCACAGAAACATGTTGCCTAGAGACCAAGGTATTCCTTCGCTTTCACCCTCAACTATACAGTTATCACTTCTCTGCTTGATATGGCTTGTAGTCATATGTATGTTAGTTAAAAGGTAAGGGATGATATTTAGGGAATAAAAGTACCATTCTTTCCTAGGCCACAACTGCTGATGCTAAGCTTCTATGTTACCTACAACAGAACGCTTTCCCAAAGCCAGTTTCCCTTGTATACTGTACCATACTTATAGTACATTTGCATGTTGACCTGTACTttataaattacatttttttttatga

Function

symbol description
coch Predicted to act upstream of or within defense response to bacterium and positive regulation of innate immune response. Predicted to be active in collagen-containing extracellular matrix. Human ortholog(s) of this gene implicated in autosomal dominant nonsyndromic deafness 9 and autosomal recessive nonsyndromic deafness 110. Orthologous to human COCH (cochlin).

NR:

description
cochlin

GO: NA

KEGG:

id description
K23574 COCH; cochlin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021573986.2 False 2659 mRNA 0.49 12 33536257 33541967
XM_021573985.2 True 2666 mRNA 0.49 12 33536257 33541969

Neighbor

gene id symbol gene type direction distance location
ap4s1 ap4s1 coding downstream 26896 33504854 ~ 33509361 (-)
nubpl nubpl coding downstream 113992 33413220 ~ 33422265 (-)
LOC110497690 arhgap5 coding downstream 134617 33364463 ~ 33401640 (-)
akap6 akap6 coding downstream 174858 33167743 ~ 33361399 (-)
LOC110497688 npas3 coding downstream 374361 32770921 ~ 33161896 (-)
opn6b LOC106602743 coding upstream 4830 33546799 ~ 33555237 (-)
scfd1 scfd1 coding upstream 13498 33555467 ~ 33578230 (-)
g2e3 g2e3 coding upstream 41677 33583646 ~ 33605594 (-)
foxg1a foxg1 coding upstream 301483 33843452 ~ 33845841 (-)
sptbn5 sptbn5 coding upstream 310976 33852945 ~ 33907531 (-)
G1615801 NA non-coding downstream 124125 33411815 ~ 33412132 (-)
G1615838 NA non-coding downstream 125588 33410366 ~ 33410669 (-)
G1615717 NA non-coding downstream 209305 33239467 ~ 33326952 (-)
G1615760 NA non-coding downstream 234559 33301275 ~ 33301698 (-)
G1615692 NA non-coding downstream 329299 33206684 ~ 33206958 (-)
G1615889 NA non-coding upstream 30242 33572211 ~ 33618437 (-)
G1615982 prkd1 non-coding upstream 185326 33727295 ~ 33728492 (-)
G1616007 NA non-coding upstream 226819 33768788 ~ 33769027 (-)
G1616009 NA non-coding upstream 229908 33771877 ~ 33772112 (-)
G1616027 NA non-coding upstream 256937 33798906 ~ 33799128 (-)
G1615810 hectd1 other downstream 56821 33478593 ~ 33479436 (-)
G1615793 NA other downstream 123040 33412219 ~ 33413217 (-)
G1615357 LOC106602003 other downstream 878488 32650926 ~ 32657769 (-)
G1615240 NA other downstream 1074678 32458530 ~ 32461579 (-)
LOC110498336 LOC106611177 other upstream 1850891 35392412 ~ 35396783 (-)
G1619119 NA other upstream 2859585 36401554 ~ 36405336 (-)
LOC110497753 spred1 other upstream 3112554 36654523 ~ 36840800 (-)
G1622757 LOC106600509 other upstream 5415055 38957024 ~ 38958974 (-)
si:dkey-229e3.2 LOC106599591 other upstream 5823288 39365257 ~ 39370631 (-)

Expression


Co-expression Network