opn6b (LOC106602743)


Basic Information

Item Value
gene id opn6b
gene name LOC106602743
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 33546799 ~ 33555237 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021573989.2
ACTCACCACTATTACACAAGTTGCTGCGGTTTATTTTCTGTATTGCCCAACACCATAGACTAAGACTGCTACCTTGACCAGCTTTAGGTGCCACCAAGTATGTATCGAAGTGTATTATTAGCTGACCTGACTTCCGTGGCTAGCGTTGCAGCAGCCACTCTCATTAACCGGATCAAGGGATTAGGCTAATGTATGTAGGACACAACCATGCCAGTTCTATTTCTGTACACCTGCCTTGCATACACAGACAGGGTCATTCTatgggagagactgagaggggcATTCTCAACTCTGTCTCAGTTGGAATTACGACAGAGAATGCTACCATCTACCTGAGGGGTCCCTGGGACATCATTCACTTCAGCTGTCCTGGATCAGAACATACCGGGGTCTTCAGACCATGTGTGTTTGAAATGAGACCGTCATAAAAGCTTGGATCTTGGCCGTGAGGTGCTCAGATGACAAGGGTGCTGATGGAGGACACCAACATATTCCCTCCTAATGTATCTGTCTACAGGTTGTCAGCCGAGGGGGAGACTGCCGTTGGTGTTTACTTGTTGATAATAGGGTGGCTTTCCTGTCTAGGTAATGGAGTGGTGATTCTACTGTTGGTCAAGCAGAGACACAGTCTTGAGCCACAGGACTTACTCACTCTCAATCTGGCTGTGTCCGACGCTGGCGTCGCGATCTTCGGCTACTCCAGAGGGATACTGGAAATCTTCAACTTGTTCAGGGACGACGGCCTGCTGATCAAGACCATCTGGACCTGCCAGGTGGACGGCTTCCTGATCATGCTCTTTGGGCTCATCAGCATCAACACACTGACATCCATCAGTGTCGTTCGCTACATCAAAGGATGCCAGCCCAGCTATGCTCATTATAACAACCACTGTAACGTTGCCGTGGTGATTGTGGCAGTGTGGCTGTGTGCCCTCTTCTGGGCTGGAGCGCCCCTCGTGGGCTGGGGGAGTTACACAGCTCGTAAGTATGGGACGTGTGAGATAGACTGGGTCCAGGCCAGGTTCTCTGTGTCGTACAGACTCTATGTCATCCTCATCTTCACCTTCAACTTTTTCATCCCATTCGTGGTCATATGGTTCTCCTACGTGTCCATCATCCGGACGGTCAACAACAGCCATAAGTCCAGCAGAGGGGGAgcagccagcgagagagagaatcagtTGGAGCGCAGTATAACAACGgtgtcTCTGATCTTGTGTTCAGCCTTCCTGCTGGCCTGGTCTCCCTACACAGTCATCTCCATGTGGTCTGCCTGTGGTCACCAGGTGCCTCCTCTCCACAGCATCCTGGCCAGCCTGTTTGCTAAGTCAGCCAGCTCCTACAACCCCTTCATCTACCTGGGCCTGAACTCCAAGTTCAGACAAGACTTCAGAGCCCAGTTCCACTGCCTGCACCACAAACCGGACCTCTCCCACAGGCCCGACGAGGTGCAGATTGACCTGGACATTATGGAGGtgaatggaggggtggatgaCCTGGACTCTGGGGTAGAGCTGGGTAGTGAAaggggtgtggaggagaggggggagaaccAGAGTTGTCCTCTTATGCCCCCGATGATAGCCCCGGCTCCCAGTCATCGCCTGTTCCTGAGGAAACTCAGTGACTCTGGGCGCCTGTGAGCTCTGTCtctttgtttctgtctctgtccctctgtttctctctttcggtctctctctgtctctctatttctcggTCTCTGattctgtctcgctgtctctcccactctctctctctctctctctccacagcggAGCTCAGCTCTCACTGTTAACTGTTCACCTCCACAGCACTCTGATCGCCTGTACACACGTACATTTTTCTCACAGCACAGCAACCGTCTGgacttacttttttttttttttaat

Function

NR:

description
opsin-5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021573989.2 True 1889 mRNA 0.52 6 33546799 33555237

Neighbor

gene id symbol gene type direction distance location
coch coch coding downstream 4830 33536257 ~ 33541969 (-)
ap4s1 ap4s1 coding downstream 37438 33504854 ~ 33509361 (-)
nubpl nubpl coding downstream 124534 33413220 ~ 33422265 (-)
LOC110497690 arhgap5 coding downstream 145159 33364463 ~ 33401640 (-)
akap6 akap6 coding downstream 185400 33167743 ~ 33361399 (-)
scfd1 scfd1 coding upstream 230 33555467 ~ 33578230 (-)
g2e3 g2e3 coding upstream 28409 33583646 ~ 33605594 (-)
foxg1a foxg1 coding upstream 288215 33843452 ~ 33845841 (-)
sptbn5 sptbn5 coding upstream 297708 33852945 ~ 33907531 (-)
ehd4 ehd4 coding upstream 355372 33910609 ~ 33935156 (-)
G1615801 NA non-coding downstream 134667 33411815 ~ 33412132 (-)
G1615838 NA non-coding downstream 136130 33410366 ~ 33410669 (-)
G1615717 NA non-coding downstream 219847 33239467 ~ 33326952 (-)
G1615760 NA non-coding downstream 245101 33301275 ~ 33301698 (-)
G1615692 NA non-coding downstream 339841 33206684 ~ 33206958 (-)
G1615889 NA non-coding upstream 16974 33572211 ~ 33618437 (-)
G1615982 prkd1 non-coding upstream 172058 33727295 ~ 33728492 (-)
G1616007 NA non-coding upstream 213551 33768788 ~ 33769027 (-)
G1616009 NA non-coding upstream 216640 33771877 ~ 33772112 (-)
G1616027 NA non-coding upstream 243669 33798906 ~ 33799128 (-)
G1615810 hectd1 other downstream 67363 33478593 ~ 33479436 (-)
G1615793 NA other downstream 133582 33412219 ~ 33413217 (-)
LOC110497688 npas3 other downstream 771095 32770921 ~ 33161896 (-)
G1615357 LOC106602003 other downstream 889030 32650926 ~ 32657769 (-)
G1615240 NA other downstream 1085220 32458530 ~ 32461579 (-)
LOC110498336 LOC106611177 other upstream 1837623 35392412 ~ 35396783 (-)
G1619119 NA other upstream 2846317 36401554 ~ 36405336 (-)
LOC110497753 spred1 other upstream 3099286 36654523 ~ 36840800 (-)
G1622757 LOC106600509 other upstream 5401787 38957024 ~ 38958974 (-)
si:dkey-229e3.2 LOC106599591 other upstream 5810020 39365257 ~ 39370631 (-)

Expression


Co-expression Network