scfd1 (scfd1)


Basic Information

Item Value
gene id scfd1
gene name scfd1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 33555467 ~ 33578230 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036954682.1
TCGGTCATAGATTTTTTGCTGAACATAGGTTGTCGAATTGTTGATTCACATTGTAAAACCGACTATTTTCTCTGACCATAGCCTGTTGAATAAAATACGAACTTCCACGATGGCCACCAGCCATCTTCACGAGAAAATCAATGCTAAGCTAACTTATTAGCTAGCTATCGTAAACGCGTTACAATAATATTATGAAGCAGCAACAAGTCGGATGGCTAACCTACACTTACTACTACTCTTGACTTCACTAGACACTTTGATGTGGTTGTCATGTCAAGGAACAGGAATGCCACGCAGTGAATGACTGACAGATCTAGCTAAACCGACTGCAGTATTGTTCCTTTGGATGAGTGGCTAACAAGCTAACGCTAGCTAACTAGCCATTTCACTCATCAAACAATTTCACTCGTTGATTGGCAGAAATGCTGCATTGAAGCGCATGCTGAATTTCAACACTTCTCCGTTGAAAAACACTGCTGCTGAGCCAGTATGGAAGGTTCTGATCTACGACAGGTTTGGCCAGGACATAATCTCCCCTCTACTGGCGGTCAAAGAACTACGGGACATGGGAATCACTTTGCACTTGTTGCTTCATTCAGACAGAGATCCCATCCCGGATGTGccagccatctattttgttatgCCGACAGAGGAGAATATTGACCGGATATGCCAAGACCTTCGTAACCAGCTGTATGAGTCATACTATTTGAACTTCATCTCAGCCATATCCAGAAGTAAACTAGAGGATATTGCTAGTGCAGCTCTCTCAGCCAACGCTGTCACCCAGGTTACCAAGGTGTTTGATCAGTATTTGAATTTCATCACACTCGAAGATGATATGTTTATCCTCTGTAATCAAAATAAAGAGCTCATCTCCTACCATGCGATTAACAAACCGGACATCATGGACACAGAGATGGAGGCCATCATGGATACGATTGTAGACAGCCTTTTCTGCTTCTTTGTCACGCTGGGTGCTGTCCCCATAATCCGCTGTCCAAGAGGGAATGCTGCGGAGATGGTCGCGGTGAAACTTGACAAGAAGCTGAGGGAGAACCTGCGAGACGCCAGAAACAGCCTGTTCACTGGAGACAATATGGGGGCCGGCCAGTTCAGctTCCAGAGACCCCTATTTGTACTCGCTGATCGCAACCTGGATCTTGCCACCCCTCTCCACCACACATGGACCTACCAGGCCCTCATCCACGATGTGCTGGACTTCCACCTGAACAGGGTCAGTATGGACGAATCTGTGGGGTCAGAAGCTTCCCCTTCCGGAGCCAgacccaagaagaaaaataagaagAGTTATGACCTCACAGCCGCAGACAAATTCTGGCAGAAACACAAGGGCAGCCCGTTCCCGGAGGTGGCCGAGTCTGTACAGGAGGAGTTAGACACGTACCGAGCCCAAGAGGACGAGGTGAAACGCCTCAAGAGCATCATGGGGTTGGAGGGTGAGGATGAGGGACccattagtagtattagtatgtCAGACAACACCGCAAAACTTACCTCAGCTGTCAGCTCCCTACCAGAGCTTCTGGAGAAGAAGAGGCTGATTGACCTCCACACTAACGTAGCCACCGCCGTTCTGGATCACATTAAGAGCCGTAAACTGGACGTGTACTTTGAGTACGAGGAGAAGCTGATGAGCAAATCCACCCTGGAGAAGTCTTTGCTGGACATAATCAGTGACCCTGATGCGGGAACACCAGAGGACAAGATGAGACTGTTTCTGATTTTCTACATCACAGCCCTGCAACCCCCTTCAGAGACTGATCTGGACCAATACAAGAAGGCTCTTCTAGAGACTGGCTGCGACCTGTCCTCTCTCAACTACATCAAGCAGTGGAAGGCTTTCACAAAGATTGCTGCCACACCATCTAACTATGGGAACAGCGGTGTGAAACCTATGGGCCtcttctctagagtgatgaactCTGGCTCCCAGTTTGTCATGGAGGGGGTGAAACACCTGGTGCTTAAACAGCATAACCTGCCAGTCACGCGTATCCTGGACAACCTGATGGAGATGAAGTCCAATCCGGAGACTGATGACTACAGATACTTTGATCCCAAGATGCTGCGCGGCAGTGAGAGCTCAACCCCAAGGAACAAGAACCCGTTTCAAGAGGCTATCGTCTTTGTGGTCGGAGGAGGAAACTACATAGAATATCAAAACCTGGTGGACTACACAAAGGCAAAGCCAGGGAAGAGGGTGCTGTACGGATGCAGTGAGCTCTTCAATGCAGGGCAGTTCATCAAACAGCTATCCTCACTCGGCCAAAAGTAAAAGCAAGAAAACATATCAACACTTTCTTTTCTTGGATTCCATTTCTCCTAAATACTCACAACTGCAATCAAGACCTCTCTAATCATTGATGATCGTTTTCAGTTACTCTagatcctgtctctctctctctctgatattcCATGTGTTTTATAATGTGTACTATACTTACATTGTTTGTTTAAAGGCCCATtccagtcaaaaacatgatttttctgtgttttatatttcCATACTATGAGGTTGGGGAAAATATTGCAAAAATtctgataatgcccttttagtgtaagagctttttgaaaagaccacctgaaatgatTGCCTGTTTTGGtgagatggagttttggcctgcctggtgagaTCACCAGGTGGTCAATTAGTTAATAGGTGAATaagagagagttccaaacctctctgccaataacagatcgttttcagttttcccctccccactcagaccactcagaCAGTCCTACCAAAATTCTTGTTTGAGAAATTCctcttgctaagaagctattttcgttactttttgaccattttaattgaaaacaatcgcagtaaggtacttaattgttacctagaaatgatttgatattgatataaaaacatctgcattgggcctttaactaATTTGCTTTGCACTCTCAACAAATAAAGTTGAATAGTCTTTACTCAACACGGTTGCTGTGTAGTAGATC
>XM_021573988.2
TTGAGTCCGGCCCATACGTTTCACTCCGCTCACATTGAGTCAAGTCCCGAACTACACACTGCCTCTCAACCAAGCCGCACTTAGCTGCCACGTCATCTGTTGCCCCGTCACTGCATAAACAGAAAAGATGGCCGCCTCCGTCCGGGAAAAGCAGGCAGCTGCATTGAAGCGCATGCTGAATTTCAACACTTCTCCGTTGAAAAACACTGCTGCTGAGCCAGTATGGAAGGTTCTGATCTACGACAGGTTTGGCCAGGACATAATCTCCCCTCTACTGGCGGTCAAAGAACTACGGGACATGGGAATCACTTTGCACTTGTTGCTTCATTCAGACAGAGATCCCATCCCGGATGTGccagccatctattttgttatgCCGACAGAGGAGAATATTGACCGGATATGCCAAGACCTTCGTAACCAGCTGTATGAGTCATACTATTTGAACTTCATCTCAGCCATATCCAGAAGTAAACTAGAGGATATTGCTAGTGCAGCTCTCTCAGCCAACGCTGTCACCCAGGTTACCAAGGTGTTTGATCAGTATTTGAATTTCATCACACTCGAAGATGATATGTTTATCCTCTGTAATCAAAATAAAGAGCTCATCTCCTACCATGCGATTAACAAACCGGACATCATGGACACAGAGATGGAGGCCATCATGGATACGATTGTAGACAGCCTTTTCTGCTTCTTTGTCACGCTGGGTGCTGTCCCCATAATCCGCTGTCCAAGAGGGAATGCTGCGGAGATGGTCGCGGTGAAACTTGACAAGAAGCTGAGGGAGAACCTGCGAGACGCCAGAAACAGCCTGTTCACTGGAGACAATATGGGGGCCGGCCAGTTCAGctTCCAGAGACCCCTATTTGTACTCGCTGATCGCAACCTGGATCTTGCCACCCCTCTCCACCACACATGGACCTACCAGGCCCTCATCCACGATGTGCTGGACTTCCACCTGAACAGGGTCAGTATGGACGAATCTGTGGGGTCAGAAGCTTCCCCTTCCGGAGCCAgacccaagaagaaaaataagaagAGTTATGACCTCACAGCCGCAGACAAATTCTGGCAGAAACACAAGGGCAGCCCGTTCCCGGAGGTGGCCGAGTCTGTACAGGAGGAGTTAGACACGTACCGAGCCCAAGAGGACGAGGTGAAACGCCTCAAGAGCATCATGGGGTTGGAGGGTGAGGATGAGGGACccattagtagtattagtatgtCAGACAACACCGCAAAACTTACCTCAGCTGTCAGCTCCCTACCAGAGCTTCTGGAGAAGAAGAGGCTGATTGACCTCCACACTAACGTAGCCACCGCCGTTCTGGATCACATTAAGAGCCGTAAACTGGACGTGTACTTTGAGTACGAGGAGAAGCTGATGAGCAAATCCACCCTGGAGAAGTCTTTGCTGGACATAATCAGTGACCCTGATGCGGGAACACCAGAGGACAAGATGAGACTGTTTCTGATTTTCTACATCACAGCCCTGCAACCCCCTTCAGAGACTGATCTGGACCAATACAAGAAGGCTCTTCTAGAGACTGGCTGCGACCTGTCCTCTCTCAACTACATCAAGCAGTGGAAGGCTTTCACAAAGATTGCTGCCACACCATCTAACTATGGGAACAGCGGTGTGAAACCTATGGGCCtcttctctagagtgatgaactCTGGCTCCCAGTTTGTCATGGAGGGGGTGAAACACCTGGTGCTTAAACAGCATAACCTGCCAGTCACGCGTATCCTGGACAACCTGATGGAGATGAAGTCCAATCCGGAGACTGATGACTACAGATACTTTGATCCCAAGATGCTGCGCGGCAGTGAGAGCTCAACCCCAAGGAACAAGAACCCGTTTCAAGAGGCTATCGTCTTTGTGGTCGGAGGAGGAAACTACATAGAATATCAAAACCTGGTGGACTACACAAAGGCAAAGCCAGGGAAGAGGGTGCTGTACGGATGCAGTGAGCTCTTCAATGCAGGGCAGTTCATCAAACAGCTATCCTCACTCGGCCAAAAGTAAAAGCAAGAAAACATATCAACACTTTCTTTTCTTGGATTCCATTTCTCCTAAATACTCACAACTGCAATCAAGACCTCTCTAATCATTGATGATCGTTTTCAGTTACTCTagatcctgtctctctctctctctgatattcCATGTGTTTTATAATGTGTACTATACTTACATTGTTTGTTTAAAGGCCCATtccagtcaaaaacatgatttttctgtgttttatatttcCATACTATGAGGTTGGGGAAAATATTGCAAAAATtctgataatgcccttttagtgtaagagctttttgaaaagaccacctgaaatgatTGCCTGTTTTGGtgagatggagttttggcctgcctggtgagaTCACCAGGTGGTCAATTAGTTAATAGGTGAATaagagagagttccaaacctctctgccaataacagatcgttttcagttttcccctccccactcagaccactcagaCAGTCCTACCAAAATTCTTGTTTGAGAAATTCctcttgctaagaagctattttcgttactttttgaccattttaattgaaaacaatcgcagtaaggtacttaattgttacctagaaatgatttgatattgatataaaaacatctgcattgggcctttaactaATTTGCTTTGCACTCTCAACAAATAAAGTTGAATAGTCTTTACTCAACACGGTTGCTGTGTAGTAGATC

Function

symbol description
scfd1 Predicted to enable syntaxin binding activity. Acts upstream of or within several processes, including fin regeneration; glycoprotein transport; and skeletal system development. Predicted to be active in Golgi membrane and cytosol. Is expressed in digestive system; head; myotome; notochord; and pharyngeal arch. Orthologous to human SCFD1 (sec1 family domain containing 1).

NR:

description
sec1 family domain-containing protein 1

GO:

id name namespace
GO:0006904 vesicle docking involved in exocytosis biological_process
GO:0031101 fin regeneration biological_process

KEGG:

id description
K19998 SCFD1, SLY1; sec1 family domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036954682.1 False 2994 mRNA 0.45 24 33555467 33578058
XM_021573988.2 True 2727 mRNA 0.47 24 33555467 33578230
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Neighbor

gene id symbol gene type direction distance location
opn6b LOC106602743 coding downstream 230 33546799 ~ 33555237 (-)
coch coch coding downstream 13498 33536257 ~ 33541969 (-)
ap4s1 ap4s1 coding downstream 46106 33504854 ~ 33509361 (-)
nubpl nubpl coding downstream 133202 33413220 ~ 33422265 (-)
LOC110497690 arhgap5 coding downstream 153827 33364463 ~ 33401640 (-)
g2e3 g2e3 coding upstream 5416 33583646 ~ 33605594 (-)
foxg1a foxg1 coding upstream 265222 33843452 ~ 33845841 (-)
sptbn5 sptbn5 coding upstream 274715 33852945 ~ 33907531 (-)
ehd4 ehd4 coding upstream 332379 33910609 ~ 33935156 (-)
LOC110497707 LOC106600975 coding upstream 363326 33941556 ~ 33957602 (-)
G1615801 NA non-coding downstream 143335 33411815 ~ 33412132 (-)
G1615838 NA non-coding downstream 144798 33410366 ~ 33410669 (-)
G1615717 NA non-coding downstream 228515 33239467 ~ 33326952 (-)
G1615760 NA non-coding downstream 253769 33301275 ~ 33301698 (-)
G1615692 NA non-coding downstream 348509 33206684 ~ 33206958 (-)
G1615982 prkd1 non-coding upstream 149065 33727295 ~ 33728492 (-)
G1616007 NA non-coding upstream 190558 33768788 ~ 33769027 (-)
G1616009 NA non-coding upstream 193647 33771877 ~ 33772112 (-)
G1616027 NA non-coding upstream 220676 33798906 ~ 33799128 (-)
G1616036 NA non-coding upstream 241316 33819546 ~ 33819798 (-)
G1615810 hectd1 other downstream 76031 33478593 ~ 33479436 (-)
G1615793 NA other downstream 142250 33412219 ~ 33413217 (-)
LOC110497688 npas3 other downstream 779763 32770921 ~ 33161896 (-)
G1615357 LOC106602003 other downstream 897698 32650926 ~ 32657769 (-)
G1615240 NA other downstream 1093888 32458530 ~ 32461579 (-)
LOC110498336 LOC106611177 other upstream 1814630 35392412 ~ 35396783 (-)
G1619119 NA other upstream 2823324 36401554 ~ 36405336 (-)
LOC110497753 spred1 other upstream 3076293 36654523 ~ 36840800 (-)
G1622757 LOC106600509 other upstream 5378794 38957024 ~ 38958974 (-)
si:dkey-229e3.2 LOC106599591 other upstream 5787027 39365257 ~ 39370631 (-)

Expression

scfd1(scfd1) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 40.
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scfd1(scfd1) Expression in each Bioproject

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scfd1(scfd1) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 1000.
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Co-expression Network