prkd1 (prkd1)


Basic Information

Item Value
gene id prkd1
gene name prkd1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 33610892 ~ 33728505 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021573992.2
CCCACAAAGGAGAAACACCCTCTTTTTTTTAAACTGCCATATGAAAACaaacagagcgagggagaggagctGCACAGGCTGCTGAGAGCCCAGGATACTGCAGAGAGttaCCTGAGTGTGGCTTCTATGGAATGTATGATAAGATCCTGCTGTTCCGCCATGTCCCAGACTCAGAGAACATCCTCCAGCTGGTGAAATGTGCTACAGACATCACAGAGGGAGACCTGGTGGAGGTGGTGCTATCAGCCTCTGCAACAGTGGAGGACTTCCAAATCCGTCCCCATGCCTTGTTTGTCCACTCCTACCGGGCCCCTGCCTTCTGTGACCACTGTGGAGAGATGCTGTGGGGCCTGGTGAGACAGGGCCTCAAGTGTGAAGGTTGTGGTCTGAACTATCACAAGCGCTGTGCGTTTAAAATCCCAAATAACTGCAGTGGTATCCGCAAGCGGAGGTTGTCCAATGTCTCTCTGACCGGCTTGACCACCCTGACCACCACACGGTCCAATGAGCCTTCGCCTTTCACCTCCGACGAGGCCTTACTGTCTTCTGTCACCTCCGGCATGGAGCAGAAGGCACAGTCAGACATCTTtcccggcagagagagaaggtcCTCTTCCTACACCGGCCGGCCCATAGAGTTAGACAAAATCCTCCTGTCCAAAGTCAAGGTGCCTCATACGTTTGTCGTCCACTCCTACACACGCCCCACCGTCTGCCAACACTGCAAGAAGCTACTCAAGGGTCTGTTCCGTCAAGGCCTGCAATGCAAAGATTGCAAATTCAACTGTCATAAACGATGTGCGCCCAAAGTGCCAAACAACTGCCTTGGAGAAGTGTCTAAAAATGGAGaacTACTGAGCCCAGGGGCAGAGTCTGATTTGGTGATGGGGCAGGGTTGTGACGACCACGACAGTGACAGGAACAGTGGTCTCATGGatgacatggaggaggccgtggTGACTGACACTGGCCTGCTGGAGGCTGGCCATGGGGAAATGGGAGAGCTCCACGACCCAGAGGACGACTCCAACAAGGCTATAAGCCCATCTACTAGCAACAACATCCCGCTGATGCGAGTGGTCCAGTCAGTCAAACACACCAAGAGGAAAAGCAGTAATGTCATGAAGGAAGGTTGGCTAGTGCACTTCACCAGTAAAGACACTCTGAGGAAAAGACACTACTGGAGACTGGACAGCAAATGCATCACGCTTTTCCAGAATGACACAGGAAGCAAATACTACAAGGAAATTCCATTGTCAGAGGTGTTGTCTCTGGACCCAGCCAAGACCTTCAACCTGCTGTCTGAGGGCTCCAACGCCCACTGCTTTGAGATCACTACGGCCAGTCTGGTCTACTACGTAGGGGAGAACCTGGCAAGGCCGGAGGGCCCGGGGAGCATGTCGGCCCACGGCAGTATGCTGGTCAGTGGGGTTGGGCCGGACGTCGCCCGTATGTGGGAGATCGCCATCCAGCACGCCCTCATGCCCGCCATCTCAAAAGGACTGTCGCACGGGTCACGCCACGGTGGCCACAATTATGTTTCCATCAGCATTTCAGTGTCCAACTGCCAGATTCAAGAGAACGTGGATATCAGCTCAGTGTATCAGATATTCCCGGATGAAGTCCTAGGATCGGGGCAATTTGGGATTGTTTATGGAGGAAAGCACCGAAAAACTGGCCGGGATGTAGCAATTAAGATCATTGACAAGTTACGCTTCCCCACCAAGCAGGAGAGCCAGCTACGCAATGAGGTCGCCATCCTTCAGAACCTGCATCACCCTGGGGTAGTGAACCTGGAGTGCATGTTTGAGACGCCGGAGCGCGTCTTCGTCGTCATGGAGAAGCTCCATGGAGACATGCTGGAGATGATCCTGTCCAGTGAGAAGGGGAGGCTGCCTGAACGCATCACCAAATTCTTTGTCTCACAGattcttcaggCTCTTCATCATCTCCACTTCAAGAACATCGTCCACTGTGACCTCAAACCAGAGAACGTCTTGCTGGGGTCCTCTGACGCTTTTCCACAAGTGAAGTTGTGCGACTTTGGCTTTGCCCGCATCATTGGAGAAAAGTCTTTCCGTCGGTCAGTGGTGGGCACTCCGGCCTACCTGGCCCCTGAGGTCCTAAGGAACAAAGGCTACAACCGCTCCCTGGACATGTGGTCTGTGGGGGTCATCATCTACGTCAGCCTCAGTGGTACCTTCCCATTCAACGAGGACGAGGACATTCACGACCAGATCCAGAACGCTGCCTTCATGTACCCACCCCACCCCTGGAAGAAGGTGTCCCAGGAAGCAATTGACCTCATTAATAACTTGCTGCAAGTCAAGATGAGGAAGCGCTACAGCGTGGACAAGTCTCTCAGCCATCCGTGGTTACAGGACTACCAAATGTGGCTGGATCTGCGTAGCCTAGAGTGGAAGATGCACCAGCGCTACATCACGCACGAGAGCGATGACACCCGCTGGGAACGCCACGCCGAACAGCACGGCCTGACGTACCCTGCCCACCTGGTCAACCCGCACGCCGACGTCAGCGAGGGGGTGGAGTCGGAGGAGGCGGACACCATGACGGCCCTCAGCATCAGGGTCAATAGTGTAAACGCTGGGCTGCTGCCCCATTAAGAGTCAGCATGCTGCAGtactgtacactgctgctaccacCCCCTTAAGAGCCTGCTCACTCCCTCCACAACACACCACAGCACAACGGACTGACTGACCCCTCCACTCCCAGCCAGGAACTAGGAGCTCCAAACCCTGCCTTTAAACTAACTGCCTAATGAACAAATATTCTCATTTCCAATAGTCTGTATATCAGTCAACCAGGTGTATTGCCTTACTGCTTAATGTAAGTGAATCTAATGACTAATACTGTAATACTCTGGGTATGAGGGATCATCCAGGTGTACTGCATGTTAAGTCAACAGCAGCAACCAATCACTTCAAAAAAGCATTTTTTCTTGATGATGTGGCCGGggacactttgcttcttgaatgtccaatatcttgaaaacttgactgctgacatccaaaacattttgggactagtTTTTGATAGTTTTTGAGTGGATTTCCACTTGAAGTCAAGAGCAGAAACCAATCCACCCCCAAAAGCCTAATGATTTAGTCAAAACTAAATTATGTGATTGGGTGCAACCCAACGAGAGAGCTCAGGACAAACCTGTGCCACTCAGTGAGAAcggatattattattattactattattactagtATTATTACTAAAGTATGATGAAAATTCACAGAAAACCAGTAAAGCTGGATGGTGGAAAGACAAAGACCGAGGGGGGTGATACCCCATTGTAGGCTGGATGTGTGTGGAGGCAGAATCCCGAGGCCTGGATACAGAGAAACAGTGAAGGTAGAATACCTGTAAGCATCTGACCTCGTCAACAGCTAGCTGCTTTTCTAGTCTAGTGTTGAAACTGTTCATGATGTGATGCTGAATGTTGAATCGTATGTTGGCTACTGTACAGTATGCTTGTGCTCTTTGCGCAATTGCAACCAGCCTTTAATGCATTATTGCCTGCAGGGAAGAAATAATTTTCTCTGGCTACATATTTAAATAAAGATGTTTCAAAGCAGA
>XM_021573990.2
TAGGACATTTCAGAGTTCCGACTAGCACATGAACACGGCATAACATCAGCCATCCAGGCAGGATGCGGGCTCTGATTACATCCGAACGTTCAAGCGTAACTGACGTATATGGCTTCATCATTATCGTATTTCACCGCTCAAAATATGATATTTTTCAACATTTCTTTGGTTTCTATCATTCGTTTTATTAGGCTAATAATCTCTCGTCATAATTTGCATTCATGACACGATCGGAGATTTGAAGTTGTGGTTTGATATTCAAAACAGGCGTCTGTTTTGCGGTTAGACAAGTAGATTTACTCACCTACAGTATGTCGAGTCTGTATTGTTTTGACTCTCGAGAGATAAATAGGAGTGCTCCGCCGGTGATCCGACCGCCGAGTCCCCTGTCCTCCGTATCCAATGGCATCTCTTTCCAGATCCAGATCGGGCTGAGCCGCGAGCCCGTTCTTTTGGACTCTGTCGACTTCAGTCTCGCTCAAGTCCGGGAGATGGCATGTTACATCGTGGACCAGAAGttaCCTGAGTGTGGCTTCTATGGAATGTATGATAAGATCCTGCTGTTCCGCCATGTCCCAGACTCAGAGAACATCCTCCAGCTGGTGAAATGTGCTACAGACATCACAGAGGGAGACCTGGTGGAGGTGGTGCTATCAGCCTCTGCAACAGTGGAGGACTTCCAAATCCGTCCCCATGCCTTGTTTGTCCACTCCTACCGGGCCCCTGCCTTCTGTGACCACTGTGGAGAGATGCTGTGGGGCCTGGTGAGACAGGGCCTCAAGTGTGAAGGTTGTGGTCTGAACTATCACAAGCGCTGTGCGTTTAAAATCCCAAATAACTGCAGTGGTATCCGCAAGCGGAGGTTGTCCAATGTCTCTCTGACCGGCTTGACCACCCTGACCACCACACGGTCCAATGAGCCTTCGCCTTTCACCTCCGACGAGGCCTTACTGTCTTCTGTCACCTCCGGCATGGAGCAGAAGGCACAGTCAGACATCTTtcccggcagagagagaaggtcCTCTTCCTACACCGGCCGGCCCATAGAGTTAGACAAAATCCTCCTGTCCAAAGTCAAGGTGCCTCATACGTTTGTCGTCCACTCCTACACACGCCCCACCGTCTGCCAACACTGCAAGAAGCTACTCAAGGGTCTGTTCCGTCAAGGCCTGCAATGCAAAGATTGCAAATTCAACTGTCATAAACGATGTGCGCCCAAAGTGCCAAACAACTGCCTTGGAGAAGTGTCTAAAAATGGAGaacTACTGAGCCCAGGGGCAGAGTCTGATTTGGTGATGGGGCAGGGTTGTGACGACCACGACAGTGACAGGAACAGTGGTCTCATGGatgacatggaggaggccgtggTGACTGACACTGGCCTGCTGGAGGCTGGCCATGGGGAAATGGGAGAGCTCCACGACCCAGAGGACGACTCCAACAAGGCTATAAGCCCATCTACTAGCAACAACATCCCGCTGATGCGAGTGGTCCAGTCAGTCAAACACACCAAGAGGAAAAGCAGTAATGTCATGAAGGAAGGTTGGCTAGTGCACTTCACCAGTAAAGACACTCTGAGGAAAAGACACTACTGGAGACTGGACAGCAAATGCATCACGCTTTTCCAGAATGACACAGGAAGCAAATACTACAAGGAAATTCCATTGTCAGAGGTGTTGTCTCTGGACCCAGCCAAGACCTTCAACCTGCTGTCTGAGGGCTCCAACGCCCACTGCTTTGAGATCACTACGGCCAGTCTGGTCTACTACGTAGGGGAGAACCTGGCAAGGCCGGAGGGCCCGGGGAGCATGTCGGCCCACGGCAGTATGCTGGTCAGTGGGGTTGGGCCGGACGTCGCCCGTATGTGGGAGATCGCCATCCAGCACGCCCTCATGCCCGCCATCTCAAAAGGACTGTCGCACGGGTCACGCCACGGTGGCCACAATTATGTTTCCATCAGCATTTCAGTGTCCAACTGCCAGATTCAAGAGAACGTGGATATCAGCTCAGTGTATCAGATATTCCCGGATGAAGTCCTAGGATCGGGGCAATTTGGGATTGTTTATGGAGGAAAGCACCGAAAAACTGGCCGGGATGTAGCAATTAAGATCATTGACAAGTTACGCTTCCCCACCAAGCAGGAGAGCCAGCTACGCAATGAGGTCGCCATCCTTCAGAACCTGCATCACCCTGGGGTAGTGAACCTGGAGTGCATGTTTGAGACGCCGGAGCGCGTCTTCGTCGTCATGGAGAAGCTCCATGGAGACATGCTGGAGATGATCCTGTCCAGTGAGAAGGGGAGGCTGCCTGAACGCATCACCAAATTCTTTGTCTCACAGattcttcaggCTCTTCATCATCTCCACTTCAAGAACATCGTCCACTGTGACCTCAAACCAGAGAACGTCTTGCTGGGGTCCTCTGACGCTTTTCCACAAGTGAAGTTGTGCGACTTTGGCTTTGCCCGCATCATTGGAGAAAAGTCTTTCCGTCGGTCAGTGGTGGGCACTCCGGCCTACCTGGCCCCTGAGGTCCTAAGGAACAAAGGCTACAACCGCTCCCTGGACATGTGGTCTGTGGGGGTCATCATCTACGTCAGCCTCAGTGGTACCTTCCCATTCAACGAGGACGAGGACATTCACGACCAGATCCAGAACGCTGCCTTCATGTACCCACCCCACCCCTGGAAGAAGGTGTCCCAGGAAGCAATTGACCTCATTAATAACTTGCTGCAAGTCAAGATGAGGAAGCGCTACAGCGTGGACAAGTCTCTCAGCCATCCGTGGTTACAGGACTACCAAATGTGGCTGGATCTGCGTAGCCTAGAGTGGAAGATGCACCAGCGCTACATCACGCACGAGAGCGATGACACCCGCTGGGAACGCCACGCCGAACAGCACGGCCTGACGTACCCTGCCCACCTGGTCAACCCGCACGCCGACGTCAGCGAGGGGGTGGAGTCGGAGGAGGCGGACACCATGACGGCCCTCAGCATCAGGGTCAATAGTGTAAACGCTGGGCTGCTGCCCCATTAAGAGTCAGCATGCTGCAGtactgtacactgctgctaccacCCCCTTAAGAGCCTGCTCACTCCCTCCACAACACACCACAGCACAACGGACTGACTGACCCCTCCACTCCCAGCCAGGAACTAGGAGCTCCAAACCCTGCCTTTAAACTAACTGCCTAATGAACAAATATTCTCATTTCCAATAGTCTGTATATCAGTCAACCAGGTGTATTGCCTTACTGCTTAATGTAAGTGAATCTAATGACTAATACTGTAATACTCTGGGTATGAGGGATCATCCAGGTGTACTGCATGTTAAGTCAACAGCAGCAACCAATCACTTCAAAAAAGCATTTTTTCTTGATGATGTGGCCGGggacactttgcttcttgaatgtccaatatcttgaaaacttgactgctgacatccaaaacattttgggactagtTTTTGATAGTTTTTGAGTGGATTTCCACTTGAAGTCAAGAGCAGAAACCAATCCACCCCCAAAAGCCTAATGATTTAGTCAAAACTAAATTATGTGATTGGGTGCAACCCAACGAGAGAGCTCAGGACAAACCTGTGCCACTCAGTGAGAAcggatattattattattactattattactagtATTATTACTAAAGTATGATGAAAATTCACAGAAAACCAGTAAAGCTGGATGGTGGAAAGACAAAGACCGAGGGGGGTGATACCCCATTGTAGGCTGGATGTGTGTGGAGGCAGAATCCCGAGGCCTGGATACAGAGAAACAGTGAAGGTAGAATACCTGTAAGCATCTGACCTCGTCAACAGCTAGCTGCTTTTCTAGTCTAGTGTTGAAACTGTTCATGATGTGATGCTGAATGTTGAATCGTATGTTGGCTACTGTACAGTATGCTTGTGCTCTTTGCGCAATTGCAACCAGCCTTTAATGCATTATTGCCTGCAGGGAAGAAATAATTTTCTCTGGCTACATATTTAAATAAAGATGTTTCAAAGCAGA

Function

symbol description
prkd1 Predicted to enable ATP binding activity; calcium-dependent protein kinase C activity; and metal ion binding activity. Acts upstream of or within regulation of angiogenesis and regulation of lymphangiogenesis. Predicted to be located in cytoplasm and membrane. Orthologous to human PRKD1 (protein kinase D1).

NR:

description
serine/threonine-protein kinase D1 isoform X1

GO: NA

KEGG:

id description
K06070 PKD; protein kinase D

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021573992.2 False 3606 mRNA 0.51 19 33610892 33728505
XM_021573990.2 True 4017 mRNA 0.50 19 33672905 33728505

Neighbor

gene id symbol gene type direction distance location
strn3 LOC106601852 coding upstream 74773 33508408 ~ 33536119 (+)
hectd1 hectd1 coding upstream 106030 33421162 ~ 33504862 (+)
heatr5a heatr5a coding upstream 136661 33448308 ~ 33474231 (+)
dtd2 dtd2 coding upstream 187541 33422277 ~ 33423351 (+)
LOC110497687 egln3 coding upstream 859945 32707637 ~ 32750947 (+)
ankrd9 LOC106600996 coding downstream 244523 33973028 ~ 33974537 (+)
LOC110497711 LOC106601004 coding downstream 286919 34015424 ~ 34020874 (+)
LOC110497712 LOC106601017 coding downstream 315357 34043862 ~ 34063142 (+)
LOC110497715 NA coding downstream 353065 34080414 ~ 34087323 (+)
LOC110497716 LOC106601027 coding downstream 368519 34097024 ~ 34140939 (+)
G1614711 NA non-coding upstream 11037 33536251 ~ 33599855 (+)
G1614744 NA non-coding upstream 77440 33531836 ~ 33533452 (+)
G1614718 NA non-coding upstream 180449 33427878 ~ 33430443 (+)
G1614704 NA non-coding upstream 197668 33412215 ~ 33413224 (+)
G1614869 NA non-coding downstream 8958 33737463 ~ 33737736 (+)
G1614880 NA non-coding downstream 23391 33751896 ~ 33752115 (+)
G1614917 NA non-coding downstream 82513 33811018 ~ 33811316 (+)
G1614918 NA non-coding downstream 85925 33814430 ~ 33814735 (+)
G1614926 NA non-coding downstream 96374 33824879 ~ 33825185 (+)
G1614761 NA other upstream 27542 33582012 ~ 33583350 (+)
G1614581 akap6 other upstream 394924 33211857 ~ 33215968 (+)
G1614550 NA other upstream 442002 33167630 ~ 33168890 (+)
G1614510 NA other upstream 500031 33110261 ~ 33110861 (+)
G1614914 NA other downstream 74074 33802579 ~ 33803103 (+)
G1614998 NA other downstream 182242 33910747 ~ 33981723 (+)
G1617419 LOC106601170 other downstream 1632508 35361013 ~ 35364781 (+)
G1618036 LOC107396020 other downstream 1919193 35647698 ~ 35661845 (+)
G1618864 NA other downstream 2710353 36438858 ~ 36439388 (+)

Expression


Co-expression Network