foxg1a (foxg1)


Basic Information

Item Value
gene id foxg1a
gene name foxg1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 33843452 ~ 33845841 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021573997.2
ACTGTAAAGGTTCAACCATTTTTTGTTTACATCTTAGTGTCTGTGGCTCCATAATTAATTGTAGCTATCTGTCTCCTATCGATGTGCTGTAAAGAACATGAAATAGTAGTTTTTTATTAGCAGAGTTGCAGGCGTAAGAGATTGAGACACAACTGTGCTGCTGCTTGTTGTCATTTTACCTTGCGTGTGATGTTGGATATGGGAGAACGGAAAGAAGTGAAAATGATTCCTAAATCATCGTTCAGTATAAACAGTCTGGTGCCTGAAGCCGTCCAAAGTGACAACCACCACAGAACCGTCcacgaggaagaggagaagattCCTTTACCTACCCTGGTGCAGGACCCAAAGTCGGAGAACATTTGCACCAAAATCGAAAATTCGTCCAATGAAACGACTTGCACTGACGAGAAGGAAAaacaggaagagaagaaggaTAGCAAAGAGGGGGAGAGCGGTGGGAAAGATGGTGAAAAGAAAAACGGCAAGTACGAGAAACCACCATTTAGCTATAATGCTTTAATTATGATGGCTATTCGGCAGAGTCCGGAGAAACGACTAACTCTGAACGGTATTTACGAGTTCATTATGAAGAATTTCCCCTATTACCGGGAGAACAAGCAGGGTTGGCAGAATTCCATCAGGCATAACCTCAGCCtaaacaaatgttttgttaaaGTCCCGCGGCACTATGATGACCCGGGTAAGGGGAACTACTGGATGCTTGACCCCTCGAGTGACGATGTGTTTATCGGTGGGACAACCGGCAAACTTCGCAGGAGATCGACCACATCCAGGGCAAAGTTGGCTTTTAAGCGAGGCGCTCGCCTTACTTCCACGGGGTTGACCTTTATGGATAGAGCCGGCTCTCTATATTGGCCAATGTCACCGTTTCTTTCGCTTCACCATCCGAGGGCCAGCAGCGCGTTGAGCTACAATGGGACATCATCGCCATACCCTAGTCATCCTATGTCCTACAGTACAATGTTGACTCAAAACAGTTTGGGGAACAACCATTCTTTCCCTTCTTCCAATGGCCTGAGTGTTGACAGACTTGTGAATGGAGACATTCCCTATGCCACTCATCACCTAACGGCGGCGGCGTTGGCGGCCTCTGTGCCATGTGGTCTATCGGTGCCCTGCTCCGGGACTTACTCTTTAAACCCATGTTCGTCCATAAACCTCCTTGCAGGACAGACAAGTTACTTTTTCCCCCATGTCCCGCATCCATCAATGACCTCCCAGAGCAGCGCTTCGATGGCGGCCAGGgttgcctcctcctcctcctccccgcaGGCGCCCTCATCTCTTCCCTGTGAGTCCTTAAGGTCTTCTCTACCAAGTTTCTCTTCTGGACTTTCTGGAGGACTTTCTGATTACTTCACACATCATAATCAAGGGTCAACTTCAAATCCACTTATACACTAACAAAACATCCCACGGGAGCAAGACTGTAAGTGAACATTTTACACCCATTTACATtgtaaaatatataaagaaaagcGAAATTAAACAAAGAGAAAACAAAATGAAAGCAGCCCGAACTGAAGCCCAGGTATTTTTTATTAATATTCTGCATTTATTTCTCTGTACATAATGTAATGTGTCGGGGAGTTGTTTATTATTCCACTGTCAGCAACGTGCAATGTGATACGGAAAAAAAAACGAAGAGAACGTAGTTTTTGGACTGAGGCATTACCTTAGAATGTGTATTTAAATAGTGTCTGCAGATTTGCCTAATTTTAATATTAAGAATCTTGTGATCTAATACCATCACATGAACCACCAGTCTCCATGTTTGCAGTATTATCACGTATCATGAGTGCGCTGGTGGAATATGATTGTTGCAAAGCAATTCAACACTAATTTTAATTGTTTCTTTtcaaataaatgtgtttttaaaaTGCAGAATAACCATACCAACCCAtggctctttgttattttgtccTCTCCCATAATGAACAAAGTAGTAGGCTACTTTATACTGACATTCATTTATATATAGGCTAATATTTTCACAATGTTATACTTTATAGACCAAAGAATGGGTTTAGAAAAAATACTCGAGAATTTCACTATTCAACACCAGAACAGATTCAGAAGGGGACAAAATGAACGAATGCCTTTTAACTTGTGTTGTGCatattgtactgtatgtggtcACCACCTGGTCACATCCATTTTGTAATTAGTCAAATGTCAATATACCTATTGTAATTATAGGTTAACTTTGCGAACGTGTAACCCGTGTTGAGCAAATGCCTCATAAAAATATGGAGTGATTGTTTATGTCGTCTTTAAATTTCATGGTTGTGATATTGTGGTCTTATTCCCGTGTTTGTCGCTAAAACTGTTTATCGAACAAAATAAAAGAATAGGTTACGTCCATA

Function

symbol description
foxg1 Enables sequence-specific double-stranded DNA binding activity. Involved in negative regulation of transcription, DNA-templated. Predicted to be located in nucleoplasm. Predicted to be part of chromatin. Predicted to be active in nucleus.

NR:

description
forkhead box protein G1-like

GO:

id name namespace
GO:0043584 nose development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0030182 neuron differentiation biological_process
GO:0060059 embryonic retina morphogenesis in camera-type eye biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09385 FOXG; forkhead box protein G

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021573997.2 True 2390 mRNA 0.42 1 33843452 33845841
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Neighbor

gene id symbol gene type direction distance location
g2e3 g2e3 coding downstream 237858 33583646 ~ 33605594 (-)
scfd1 scfd1 coding downstream 265222 33555467 ~ 33578230 (-)
opn6b LOC106602743 coding downstream 288215 33546799 ~ 33555237 (-)
coch coch coding downstream 301483 33536257 ~ 33541969 (-)
ap4s1 ap4s1 coding downstream 334091 33504854 ~ 33509361 (-)
sptbn5 sptbn5 coding upstream 7104 33852945 ~ 33907531 (-)
ehd4 ehd4 coding upstream 64768 33910609 ~ 33935156 (-)
LOC110497707 LOC106600975 coding upstream 95715 33941556 ~ 33957602 (-)
rcor1 LOC106600978 coding upstream 112439 33958280 ~ 33969217 (-)
tecpr2 LOC106600983 coding upstream 129181 33975022 ~ 34009037 (-)
G1616048 NA non-coding downstream 8824 33834417 ~ 33834628 (-)
G1616036 NA non-coding downstream 23654 33819546 ~ 33819798 (-)
G1616027 NA non-coding downstream 44324 33798906 ~ 33799128 (-)
G1616009 NA non-coding downstream 71340 33771877 ~ 33772112 (-)
G1616007 NA non-coding downstream 74425 33768788 ~ 33769027 (-)
G1616056 NA non-coding upstream 1360 33847201 ~ 33847411 (-)
G1616059 NA non-coding upstream 4932 33850773 ~ 33851000 (-)
G1616060 NA non-coding upstream 5372 33851213 ~ 33851521 (-)
G1616061 NA non-coding upstream 5866 33851707 ~ 33852291 (-)
LOC110498334 NA non-coding upstream 178309 34024150 ~ 34033284 (-)
G1615810 hectd1 other downstream 364016 33478593 ~ 33479436 (-)
G1615793 NA other downstream 430235 33412219 ~ 33413217 (-)
LOC110497688 npas3 other downstream 1067748 32770921 ~ 33161896 (-)
G1615357 LOC106602003 other downstream 1185683 32650926 ~ 32657769 (-)
G1615240 NA other downstream 1381873 32458530 ~ 32461579 (-)
LOC110498336 LOC106611177 other upstream 1547019 35392412 ~ 35396783 (-)
G1619119 NA other upstream 2555713 36401554 ~ 36405336 (-)
LOC110497753 spred1 other upstream 2808682 36654523 ~ 36840800 (-)
G1622757 LOC106600509 other upstream 5111183 38957024 ~ 38958974 (-)
si:dkey-229e3.2 LOC106599591 other upstream 5519416 39365257 ~ 39370631 (-)

Expression

foxg1a(foxg1) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 8.
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foxg1a(foxg1) Expression in each Bioproject

Bar chart with 9 bars.
foxg1a(foxg1) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 175.
End of interactive chart.

Co-expression Network