rcor1 (LOC106600978)


Basic Information

Item Value
gene id rcor1
gene name LOC106600978
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 33958280 ~ 33969217 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021574000.2
TTCCAGGCAAGAAGAGAGTTGGTCCACTCATCATTATTAGCTTGAGGGAGGCCTCTTCAGGGCAAGCCTTGAAAAATTCAGTTCCATCTGATGCAGCCAGGCACTTTATCAAGACCCCGTGGAGTGTCAACTAGCAACCGACCCACCTGGCAAGATTCTCGACACCTAGCTAGTAACGATTGTAATGGACAAAAGTAGCCAGCTAACTAGTCAAAATCTGTAGAATATCGTCGACAAATGCGTGTGTTAAAGCCACGTAGCTCTAGCTATGCTAATTGATTTCAtaaatcaagctagctagctagttgctacCGCAACTTTTATCCAAGTAGCAGCGAGCTAGCAGTCAAGCATCCTCGCGAACTTGGGGTATTTTTGCTCGCTAACTGGGGTGGCTGGTTAATATTGAAAGACCCATACAACACAGTTATTTGGCCACCCGTTATATTTTTGGAGCCAGCTATCTTAACTTTTATAACATAGCCGTCTTAATTGAGATTGCTGGCTAGTTGAACAGTTTAATCAGTTAGTCATCGCTTCGTCTAGCTAGCCACAATAGCTTTGCTAGCCAACCTGCTAACGTTACTTTGTTCGCTAGCTAGCGAACTAGCGCCAGGCATCTAGCAAGGTGCTgctgactacagacagacagtaacgttacagtagctagctagccaaaatCCGAGTAGTTTTGTTGCTCTTTCTCCGTTAAAAAATCCCCGCAATGATGGAAAAGAGTGGTTCGGAAATGTCAGGGAAAAGAAGGGGTAGGAATACAGTTAATAATCCTAACAAAAGTTTAGCTACGAATGGAAATAGCAACAATTCATGGGAGGAAGGAAGTTCGGGCTCCTCCAGTGATGATGAGCATGGTAGTGGTGGTATGAGAGTTGGGACTCAGTATCAAGCACTCGTGCCAGACTATGATCCAGAGATTGCCAAGGCGGCGGAGGAGAGGGACAACCTGGGCATGCTGGTGTGGCTCCCCAGCCCGAACCTGGCTGAAGCTAAATTGGATGAATACATTGCAATTGCCAAAGAGAAGCATGGGTACAACATGGAACAGGCACTGGGGATGCTCTTCTGGCACAAGCACAACATTGAGAAGTCCCTGGCAGATTTGCCCAACTTCACACCTTTCCCAGATGAGTGGACAGTGGAGGACAAGGTCCTGTTTGAACAGGGCTTCAGCTTCCACGGAAAAACGTTCCACCGTATACAGCAGATGCTACCAGACAAGTCCATTGCTAGCTTGGTTAGATTCTACTATTCATGGAAGAAGACAAGGAGCAAAACCAGTGTCATGGATCGCCACGCACGCAAGCAGAAGAGGGAACGAGAGCAGAGTGAGGATGAGGCTGAGGAGACCAATGGAAATGCTCCAAGCGATGTAGAGTACGACCCAAataaggaggagaagaaagagCTGGGCGCAGCACCTGAGAAACAGGAGCCAAAACCACTAGCAGTGGTACAGAAGCCGACTACTGGCGTGGCAGAGAAACTGACCCACGTCAAAAAAGAACCACAGGGTCCTCCAGGGAAGAACCTGCACCGTGCTAAGAAGAAGCCTCCTAAAGGAATGCATCTGAGCCAGGGAGACGTAGCTGCAATGTCCACCAGCACCCCCGCTGCAGTCGGTGTGCTGCGGCAAATGGACATGGAGCTGGTTGGCATCAAACGCCAGATCCAGAGCATCAAACAGAATAACAGTGCCCTGAAAGAGAAGCTTGATGTGGGAGTAGACAACTTCAGAGTACCTGAGGTGAACCAGAAGTTTAACACTCGCTGGACAACAGAGGAGCAACTGCTTGCTGTACAAGCCATCAGAAAATATGGGCGGGACTTCCAGGCTATCTCAGATGTGATTGGCAACAAGTCTGTGGTGCAGGTGAAGAACTTCTTTGTAAACTACCGCCGACGCTTCAACTTGGATGAGGTGCTGCAGGAGTGGGAGGCCGAGCACGGGATGGAGGGAGCAgccaagggaggagaggagaaaatggaCACATCACCATCTCCCACTGAGGATGGAGCCACCAACCCTGTGCCGCCAGAGGACCAAAAAGAGGAATCCTCACTAGTGGAAGCACAACAACCTCTAGCATCCTGAGTGGCCAGCCATTTTGGATAATTCTGTTGGCAGAACTCCTCCCTCTGAGATTTTACGTCTGTTCTGAAGAGGCGATGATGAATCTGCACAGGTTACTCCCTGTCTTTGCGGGCCTGTTCAAGAAGGTCATTCCTGTTACCTCATCCCCGATTCAAGGATGTTTTGCAGCTGCCCACCAATTAACTTACAGCACCAGTCTTCAGCCGGACTGACAGTCAAAGTAACCAGAATTATCTGACTGCACTTTATCTCATCCCTGAAAAATCTTCTGTATCAAATGTAACTTGTTTATGCATCTGGCGCCTTTTACCCTGCCTCGGTCACTCAACATTACAGATGATCCCTGTTATCCAGCCCACAATATCCCTTTGTCATCTTATCCTTCTGCAACCCTCTTTACTTTGTAAAGACTGGTTTTTGTTGTGTAGTATTTAATCGCAGTAGGTCTCGGTATGAACTGAACCTGTCGACTACAATTATTTTGTATTGTGCCCAACGTGAGGAAGCTGTCTTTGTACACCAGACAGCCATAAAGAAAAACAACCCAAGGATATACCATTGCCATGTTGGAGTTGGAGAAAAGGTGAGTCAGGTGATTTGCCCCCTGATACACACAGTGCAGAACAAGATTTTTCCACAGGGCCATTTTATACTGAGACCCAATGCAAGTTAATAACACACAACCAAATCTATTTATATTCTTCCTTCCAAAACTCTTGTCTGCAGCTGTTTCCTTTACCCCCTAATGGGTACTTGTCCCCCCATGGATTTACAAAGAACAGACTGGTGTATGAAGGCTTTAAATCCAGGAGGGGGAGTTAGCGAGACGGGTGCACAGTGTGGGAGTGAGATAGGAAATCGGAATGCAGAAATTGCCTTGCAGTATTCTACAAACTCCAATCACCATTTGGTACAAAGTAAACACTACAATCTCCCTTCCCTCTGCTTCTATGCGTTACTTACGGCTGAACCTCAGCCCTCCCCTACTGAAATACACGCAATGTTTGTCATAAAAGGTTGCTCTTACGGAATGGATGTGCCTCCAGCATAATGCAAGTAGGATTCTGGGATCTTGAAATTGCCATATCCATGGCATGATGaatgttgcccccccccccccccccccaccgtacTGAAAAGACTGTACAGATTTATTGAAAACTGACATTACATATAGTAAGTGTAGAACTTAGAATCCCAACAGGCGCTTCCATTGAAGAAATAAAGTAGGTGTTGAATTTTAAACGGTAGTGCACTTTTGGTGTTCAGTGTTCAATATTACTCAATTTAAACTAAAGTTAACATGTTCTGGTGCATATTTATAAATAATGCATTAATTGTTTGGATGACAGGTTAAAGAGACATACAAATAATGTAAAACTTTAAATAGGAGCTGTTCATCATTGAGGGATGTCCATTTTCAGTTTActagtaacctcaggacacacaatCATGTTAAAGAATGCTTTTCAGTTGGAAGGAGAGTTGAGTGAGAAATTCCTTAAGTTGATGATTAGGGAGCAAGGCTACAGTAAACATGTCTCCCCGGGCCAAATGAGATTGCTGTGACTAACACATTTCAGTTAATTACTATAGCACCCGCCTTGGGCCgatcagtgtaattttgtaaatgccggGTATCAATGGCAAGACTCATCGTTCGCCCAAGTTTCGTCAAAATCGGAccagtgctgtctgagatattGCGTGTGACTAAcggacagactgagagagatcCACAGTCCCCTCTCCGATTTTCATCTTGGGGAAcaatttttacattttaatttaaaCCTTTTTTGAGTTCTGAAGTGTTTTTATTTGTCATTTCAAACCCTGTCCCTTTCACAACAACTGGCCTATGCTATTCTACCGTTTTTACTGTACTGGTACCATGATTTAGCATACTGTTTTGAAatctttttatatatttatgaaGAAATTGTGAATGCCTGAGGTGGGGTTTTAATGAGGTTGTGTGTATTGCTGTCATTTAACATTGTGTATTCAATTTGCGCATCAATTAACTAGACAATAAATTTGAAGGATTTATAGGGACATTCA

Function

NR:

description
PREDICTED: REST corepressor 1-like

GO:

id name namespace
GO:1900052 regulation of retinoic acid biosynthetic process biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003682 chromatin binding molecular_function

KEGG:

id description
K11829 RCOR1, COREST; REST corepressor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021574000.2 True 4177 mRNA 0.45 12 33958280 33969217

Neighbor

gene id symbol gene type direction distance location
LOC110497707 LOC106600975 coding downstream 678 33941556 ~ 33957602 (-)
ehd4 ehd4 coding downstream 23124 33910609 ~ 33935156 (-)
sptbn5 sptbn5 coding downstream 50749 33852945 ~ 33907531 (-)
foxg1a foxg1 coding downstream 112439 33843452 ~ 33845841 (-)
g2e3 g2e3 coding downstream 352686 33583646 ~ 33605594 (-)
tecpr2 LOC106600983 coding upstream 5805 33975022 ~ 34009037 (-)
LOC110498333 NA coding upstream 51789 34021006 ~ 34023440 (-)
LOC110498334 NA coding upstream 56594 34024150 ~ 34033284 (-)
LOC110497713 LOC106601641 coding upstream 107592 34076809 ~ 34081232 (-)
LOC110497721 LOC106601106 coding upstream 895629 34864846 ~ 34919404 (-)
G1616061 NA non-coding downstream 105989 33851707 ~ 33852291 (-)
G1616060 NA non-coding downstream 106759 33851213 ~ 33851521 (-)
G1616059 NA non-coding downstream 107280 33850773 ~ 33851000 (-)
G1616056 NA non-coding downstream 110869 33847201 ~ 33847411 (-)
G1616048 NA non-coding downstream 123652 33834417 ~ 33834628 (-)
G1616116 NA non-coding upstream 61116 34030333 ~ 34030546 (-)
G1616125 NA non-coding upstream 69874 34039091 ~ 34039345 (-)
G1616151 LOC106601017 non-coding upstream 84175 34053392 ~ 34054457 (-)
G1616144 NA non-coding upstream 93520 34062737 ~ 34063198 (-)
G1615810 hectd1 other downstream 478844 33478593 ~ 33479436 (-)
G1615793 NA other downstream 545063 33412219 ~ 33413217 (-)
LOC110497688 npas3 other downstream 1182576 32770921 ~ 33161896 (-)
G1615357 LOC106602003 other downstream 1300511 32650926 ~ 32657769 (-)
G1615240 NA other downstream 1496701 32458530 ~ 32461579 (-)
LOC110498336 LOC106611177 other upstream 1423643 35392412 ~ 35396783 (-)
G1619119 NA other upstream 2432337 36401554 ~ 36405336 (-)
LOC110497753 spred1 other upstream 2685306 36654523 ~ 36840800 (-)
G1622757 LOC106600509 other upstream 4987807 38957024 ~ 38958974 (-)
si:dkey-229e3.2 LOC106599591 other upstream 5396040 39365257 ~ 39370631 (-)

Expression


Co-expression Network