LOC110498333


Basic Information

Item Value
gene id LOC110498333
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 34021006 ~ 34023440 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110498333
ATGTCAGGGCTGGACCGGTCATCAGAGGTAGCAGCAGACAGGTCCGGTGCTGCTGGAGGGTCCCCTAGTGCAGGGACAGGCAGGGAGTCAGAGGCACGCAGGGTCACTGGCGACAGCTCGTCAATACAAGGATCTGAGATGACCACTCTTGGCAGAAAGTCTCAGTCTACAGTGACTGGAAGTGCAAGAAAAGTTTAAGACAATGTAGCTGACTGGCACAATCTGATTCTGAAATGGGACCGACTGAATGATGAAGGATCCACCATTGCAAATAAAATTGTCAATCTAGGGTTGACAATGTTTTGCGatAAAGAGATGGAAGTCATGAAGGAGGATCAGGACACATCTAATTCAGAGAATGCATTTGGAAACAGTAGTGAACTACAAGAGTTGCTAAGTGTCATGGACAAAATGGTGAAATTGAATAAAAAAATTGATAAATTAGTTTAATCTGAGAAGGGGATCATCGACCTGGAGAAATTCCAATATGGAACAGGAAGACAAACTCCTTTGTTTCAGACCTGGCCTACATCACAGTTCGCTGAGGTCCCCTCCAAGCTCTACGAAGCCTACAAGCGTGACCGGACTCTGAAGCGGGCCATTCTTCAGGAACTAGCTCACACAACAACCTCTCAATGGTGCACCTCTCCTGCAGGCTGTATCAGCCGTACATAGACAACAGTGCAAGGCTACGGTTAGAGGGTCTTCTTTTAGAGACAGCGCATTGACGAATCTAACAAACATAAATTGGAACATTTTTTTCATATTGGAATGGGATT

Function

NR:

description
cyclin-dependent kinase 2-interacting protein isoform X1

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0016301 kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110498333 True 779 mRNA 0.46 5 34021006 34023440

Neighbor

gene id symbol gene type direction distance location
tecpr2 LOC106600983 coding downstream 11969 33975022 ~ 34009037 (-)
rcor1 LOC106600978 coding downstream 51789 33958280 ~ 33969217 (-)
LOC110497707 LOC106600975 coding downstream 63404 33941556 ~ 33957602 (-)
ehd4 ehd4 coding downstream 85850 33910609 ~ 33935156 (-)
sptbn5 sptbn5 coding downstream 113475 33852945 ~ 33907531 (-)
LOC110498334 NA coding upstream 2371 34024150 ~ 34033284 (-)
LOC110497713 LOC106601641 coding upstream 53369 34076809 ~ 34081232 (-)
LOC110497721 LOC106601106 coding upstream 841406 34864846 ~ 34919404 (-)
LOC110497722 LOC106601115 coding upstream 1299302 35322742 ~ 35327947 (-)
LOC110497723 LOC106601119 coding upstream 1305353 35328793 ~ 35336408 (-)
G1616061 NA non-coding downstream 168715 33851707 ~ 33852291 (-)
G1616060 NA non-coding downstream 169485 33851213 ~ 33851521 (-)
G1616059 NA non-coding downstream 170006 33850773 ~ 33851000 (-)
G1616056 NA non-coding downstream 173595 33847201 ~ 33847411 (-)
G1616048 NA non-coding downstream 186378 33834417 ~ 33834628 (-)
G1616116 NA non-coding upstream 6893 34030333 ~ 34030546 (-)
G1616125 NA non-coding upstream 15651 34039091 ~ 34039345 (-)
G1616151 LOC106601017 non-coding upstream 29952 34053392 ~ 34054457 (-)
G1616144 NA non-coding upstream 39297 34062737 ~ 34063198 (-)
G1615810 hectd1 other downstream 541570 33478593 ~ 33479436 (-)
G1615793 NA other downstream 607789 33412219 ~ 33413217 (-)
LOC110497688 npas3 other downstream 1245302 32770921 ~ 33161896 (-)
G1615357 LOC106602003 other downstream 1363237 32650926 ~ 32657769 (-)
G1615240 NA other downstream 1559427 32458530 ~ 32461579 (-)
LOC110498336 LOC106611177 other upstream 1369420 35392412 ~ 35396783 (-)
G1619119 NA other upstream 2378114 36401554 ~ 36405336 (-)
LOC110497753 spred1 other upstream 2631083 36654523 ~ 36840800 (-)
G1622757 LOC106600509 other upstream 4933584 38957024 ~ 38958974 (-)
si:dkey-229e3.2 LOC106599591 other upstream 5341817 39365257 ~ 39370631 (-)

Expression


Co-expression Network