LOC110497713 (LOC106601641)



Basic Information


Item Value
gene id LOC110497713
gene name LOC106601641
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 34076809 ~ 34081232 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_021574010.2
GCATACACTCCTCATCACTCACTCCTCACACACCTGGGGCAGGTAGGCTAGGCTGTTTGCACTCTGTAGTTTTCCAGGTGACAACAGGCTAAGCCCTTGATCAGGTTTGACAGGATTTCTGAAGTGGAGCAGGGAGCTACTTGATAGAAGCTTCCTGCTGTGTTTGTTCGGCTGTAATATTTCCATATTCATATTCCAGTCCGCAGGGATGAACTGGTCAGCACTAGAGAGCCTCCTTAGCGGGGTCAACAAGTACTCCACAGTGTTCGGCCgtgtgtggctgtccatggtattTGTGTTTCGTGTCATGGTGTTCGTGGTGGCCGCCCAGCCCGTGTGGGGAGACGAGAACAAGGACTTTGTGTGCAATACCAGGCAGCCCGGCTGCACCAACGTCTGCTACGACAGCATCTTCCCCATCTCACACATCCGCCTGTGGGCCCTACAGCTTATTTTTGTCACCTGTCCCTCTCTCATGGTGGTGGCGCACGTCAAGTACCGCGAGGGGAAGGATTCAAAGTATACTGCCCAACACCAGGGCTCTCACCTGTACGCCAACCCAGGGAAGAAACGTGGAGGCCTGTGGTGGACCTACCTGGTCAGCCTGATCTTCAAGGCCGGGTTTGATGTAGCCTTCCTCTACATTCTCTACTATATCTACCACGGGTATGACATGCCACGTCTCTCCAAGTGTGCCCTGGAGCCTTGCCCCAACACAGTGGACTGCTACATCTCCAGGCCCATGGAGAAGAAGATCTTCACCATCTTCATGGTGGTCTCCTCAGTACTCTGCGTCTTCATGTGCATACTGGAGATGTTCTATCTGGTGGGCATGCGCTTACAGAAGGTGCTCAAAGTATGGCAGGCCAACGAGAGACTGCTCTTTGCTGAGCGCCATAAGGTCACCAACATTGCTCTGCCGAGGTCATCGTACGTCAGGGTAGATCCAACTATTGGGAGCCAGCAGAACATCAACAGACAGAAGAAGGCAGAGGAGGCTGCTGCCACAGGCCTGTAGCCCTGATCTGTATGATTTTGGTGCATATTGGGACTGTGCAAGAATCATGAAGAACAGAAGGACCTTACACAGGAATAAGAAGCTTTATAAATGGACTCCTACATGTACAGATAACTGTGGTGTGTGTCTGCTTGTGGTtcgttgtgtttttttgtttactTTTGTTTGTTTACTTCTGTTGCCGTTTGTTTACATAGCTTACAATTGTTCATCTATTTTTTATGTTTCAGCACTGTAGCACTAATTATTTAGTACTTACATGATATTAtgtcttattcatattttttgtttTAGCCACTTCCTTGACTTGAAGAGCATTTCAAATCCCCAACCTAGTCAAGATAGAATTATATTACAGAACATCAGCGTACATTTTTAAATAGCTTTCCCAATATTTAACATCCAGAGATTTAAGGGTTTATAGTAAAATGGCAAAATCAAATACAGACTTTTTGCACCGTAATGTTTTATAGATGTTTAATATTCAAGGACCGTGTGAATTTTTGTCTTTTCTTTAAATTCATTACAGATCACTTATCGATCTTGTATTTCGGCAAGTAAAAGTCTGTATACGTGAAATAAATGATTGTATTTTAAAAGACTGAA
>XM_021574011.2
AGGTATAATTTGTGTTatgttccaacaggaatctgttccaagAACTTAGTAAAGTACAACGTTGCCAAACGCATACAAGTAACGTTAGCACGATCAAttcacctagctaactagctgcaGAAAAGGCATCAACTCACCACGTAGCTTGTTCTTAATGCCAGTCCAAGGGCTACCAGagtgaggacagacatttttCGGAATAAACGTGTCCGCAGGGATGAACTGGTCAGCACTAGAGAGCCTCCTTAGCGGGGTCAACAAGTACTCCACAGTGTTCGGCCgtgtgtggctgtccatggtattTGTGTTTCGTGTCATGGTGTTCGTGGTGGCCGCCCAGCCCGTGTGGGGAGACGAGAACAAGGACTTTGTGTGCAATACCAGGCAGCCCGGCTGCACCAACGTCTGCTACGACAGCATCTTCCCCATCTCACACATCCGCCTGTGGGCCCTACAGCTTATTTTTGTCACCTGTCCCTCTCTCATGGTGGTGGCGCACGTCAAGTACCGCGAGGGGAAGGATTCAAAGTATACTGCCCAACACCAGGGCTCTCACCTGTACGCCAACCCAGGGAAGAAACGTGGAGGCCTGTGGTGGACCTACCTGGTCAGCCTGATCTTCAAGGCCGGGTTTGATGTAGCCTTCCTCTACATTCTCTACTATATCTACCACGGGTATGACATGCCACGTCTCTCCAAGTGTGCCCTGGAGCCTTGCCCCAACACAGTGGACTGCTACATCTCCAGGCCCATGGAGAAGAAGATCTTCACCATCTTCATGGTGGTCTCCTCAGTACTCTGCGTCTTCATGTGCATACTGGAGATGTTCTATCTGGTGGGCATGCGCTTACAGAAGGTGCTCAAAGTATGGCAGGCCAACGAGAGACTGCTCTTTGCTGAGCGCCATAAGGTCACCAACATTGCTCTGCCGAGGTCATCGTACGTCAGGGTAGATCCAACTATTGGGAGCCAGCAGAACATCAACAGACAGAAGAAGGCAGAGGAGGCTGCTGCCACAGGCCTGTAGCCCTGATCTGTATGATTTTGGTGCATATTGGGACTGTGCAAGAATCATGAAGAACAGAAGGACCTTACACAGGAATAAGAAGCTTTATAAATGGACTCCTACATGTACAGATAACTGTGGTGTGTGTCTGCTTGTGGTtcgttgtgtttttttgtttactTTTGTTTGTTTACTTCTGTTGCCGTTTGTTTACATAGCTTACAATTGTTCATCTATTTTTTATGTTTCAGCACTGTAGCACTAATTATTTAGTACTTACATGATATTAtgtcttattcatattttttgtttTAGCCACTTCCTTGACTTGAAGAGCATTTCAAATCCCCAACCTAGTCAAGATAGAATTATATTACAGAACATCAGCGTACATTTTTAAATAGCTTTCCCAATATTTAACATCCAGAGATTTAAGGGTTTATAGTAAAATGGCAAAATCAAATACAGACTTTTTGCACCGTAATGTTTTATAGATGTTTAATATTCAAGGACCGTGTGAATTTTTGTCTTTTCTTTAAATTCATTACAGATCACTTATCGATCTTGTATTTCGGCAAGTAAAAGTCTGTATACGTGAAATAAATGATTGTATTTTAAAAGACTGAA
>XM_036954691.1
tcactaacagcggTGAAAATGAATGTGTGCACAAAACATGAGAAAAAAAAGAAGCTttctgtgcatatggaacatttctgTCCGCAGGGATGAACTGGTCAGCACTAGAGAGCCTCCTTAGCGGGGTCAACAAGTACTCCACAGTGTTCGGCCgtgtgtggctgtccatggtattTGTGTTTCGTGTCATGGTGTTCGTGGTGGCCGCCCAGCCCGTGTGGGGAGACGAGAACAAGGACTTTGTGTGCAATACCAGGCAGCCCGGCTGCACCAACGTCTGCTACGACAGCATCTTCCCCATCTCACACATCCGCCTGTGGGCCCTACAGCTTATTTTTGTCACCTGTCCCTCTCTCATGGTGGTGGCGCACGTCAAGTACCGCGAGGGGAAGGATTCAAAGTATACTGCCCAACACCAGGGCTCTCACCTGTACGCCAACCCAGGGAAGAAACGTGGAGGCCTGTGGTGGACCTACCTGGTCAGCCTGATCTTCAAGGCCGGGTTTGATGTAGCCTTCCTCTACATTCTCTACTATATCTACCACGGGTATGACATGCCACGTCTCTCCAAGTGTGCCCTGGAGCCTTGCCCCAACACAGTGGACTGCTACATCTCCAGGCCCATGGAGAAGAAGATCTTCACCATCTTCATGGTGGTCTCCTCAGTACTCTGCGTCTTCATGTGCATACTGGAGATGTTCTATCTGGTGGGCATGCGCTTACAGAAGGTGCTCAAAGTATGGCAGGCCAACGAGAGACTGCTCTTTGCTGAGCGCCATAAGGTCACCAACATTGCTCTGCCGAGGTCATCGTACGTCAGGGTAGATCCAACTATTGGGAGCCAGCAGAACATCAACAGACAGAAGAAGGCAGAGGAGGCTGCTGCCACAGGCCTGTAGCCCTGATCTGTATGATTTTGGTGCATATTGGGACTGTGCAAGAATCATGAAGAACAGAAGGACCTTACACAGGAATAAGAAGCTTTATAAATGGACTCCTACATGTACAGATAACTGTGGTGTGTGTCTGCTTGTGGTtcgttgtgtttttttgtttactTTTGTTTGTTTACTTCTGTTGCCGTTTGTTTACATAGCTTACAATTGTTCATCTATTTTTTATGTTTCAGCACTGTAGCACTAATTATTTAGTACTTACATGATATTAtgtcttattcatattttttgtttTAGCCACTTCCTTGACTTGAAGAGCATTTCAAATCCCCAACCTAGTCAAGATAGAATTATATTACAGAACATCAGCGTACATTTTTAAATAGCTTTCCCAATATTTAACATCCAGAGATTTAAGGGTTTATAGTAAAATGGCAAAATCAAATACAGACTTTTTGCACCGTAATGTTTTATAGATGTTTAATATTCAAGGACCGTGTGAATTTTTGTCTTTTCTTTAAATTCATTACAGATCACTTATCGATCTTGTATTTCGGCAAGTAAAAGTCTGTATACGTGAAATAAATGATTGTATTTTAAAAGACTGAA
>XM_036954690.1
aaaagagaaatgctcactaacagcggTGAAAATGAATGTGTGCACAAAACATGAGAAAAAAAAGAAGCTttctgtgcatatggaacatttctggtacCTTTAATTACAGTTCACAAAACCAATACTTTAGGTCCGCAGGGATGAACTGGTCAGCACTAGAGAGCCTCCTTAGCGGGGTCAACAAGTACTCCACAGTGTTCGGCCgtgtgtggctgtccatggtattTGTGTTTCGTGTCATGGTGTTCGTGGTGGCCGCCCAGCCCGTGTGGGGAGACGAGAACAAGGACTTTGTGTGCAATACCAGGCAGCCCGGCTGCACCAACGTCTGCTACGACAGCATCTTCCCCATCTCACACATCCGCCTGTGGGCCCTACAGCTTATTTTTGTCACCTGTCCCTCTCTCATGGTGGTGGCGCACGTCAAGTACCGCGAGGGGAAGGATTCAAAGTATACTGCCCAACACCAGGGCTCTCACCTGTACGCCAACCCAGGGAAGAAACGTGGAGGCCTGTGGTGGACCTACCTGGTCAGCCTGATCTTCAAGGCCGGGTTTGATGTAGCCTTCCTCTACATTCTCTACTATATCTACCACGGGTATGACATGCCACGTCTCTCCAAGTGTGCCCTGGAGCCTTGCCCCAACACAGTGGACTGCTACATCTCCAGGCCCATGGAGAAGAAGATCTTCACCATCTTCATGGTGGTCTCCTCAGTACTCTGCGTCTTCATGTGCATACTGGAGATGTTCTATCTGGTGGGCATGCGCTTACAGAAGGTGCTCAAAGTATGGCAGGCCAACGAGAGACTGCTCTTTGCTGAGCGCCATAAGGTCACCAACATTGCTCTGCCGAGGTCATCGTACGTCAGGGTAGATCCAACTATTGGGAGCCAGCAGAACATCAACAGACAGAAGAAGGCAGAGGAGGCTGCTGCCACAGGCCTGTAGCCCTGATCTGTATGATTTTGGTGCATATTGGGACTGTGCAAGAATCATGAAGAACAGAAGGACCTTACACAGGAATAAGAAGCTTTATAAATGGACTCCTACATGTACAGATAACTGTGGTGTGTGTCTGCTTGTGGTtcgttgtgtttttttgtttactTTTGTTTGTTTACTTCTGTTGCCGTTTGTTTACATAGCTTACAATTGTTCATCTATTTTTTATGTTTCAGCACTGTAGCACTAATTATTTAGTACTTACATGATATTAtgtcttattcatattttttgtttTAGCCACTTCCTTGACTTGAAGAGCATTTCAAATCCCCAACCTAGTCAAGATAGAATTATATTACAGAACATCAGCGTACATTTTTAAATAGCTTTCCCAATATTTAACATCCAGAGATTTAAGGGTTTATAGTAAAATGGCAAAATCAAATACAGACTTTTTGCACCGTAATGTTTTATAGATGTTTAATATTCAAGGACCGTGTGAATTTTTGTCTTTTCTTTAAATTCATTACAGATCACTTATCGATCTTGTATTTCGGCAAGTAAAAGTCTGTATACGTGAAATAAATGATTGTATTTTAAAAGACTGAA

Function


NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_021574010.2 False 1624 mRNA 0.45 2 34076809 34079869
XM_021574011.2 False 1633 mRNA 0.45 2 34076809 34081099
XM_036954691.1 False 1505 mRNA 0.45 2 34076809 34081219
XM_036954690.1 True 1556 mRNA 0.44 2 34076809 34081232

Neighbor


gene id symbol gene type direction distance location
LOC110498334 NA coding downstream 43525 34024150 ~ 34033284 (-)
LOC110498333 NA coding downstream 53369 34021006 ~ 34023440 (-)
tecpr2 LOC106600983 coding downstream 67772 33975022 ~ 34009037 (-)
rcor1 LOC106600978 coding downstream 107592 33958280 ~ 33969217 (-)
LOC110497707 LOC106600975 coding downstream 119207 33941556 ~ 33957602 (-)
LOC110497721 LOC106601106 coding upstream 783614 34864846 ~ 34919404 (-)
LOC110497722 LOC106601115 coding upstream 1241510 35322742 ~ 35327947 (-)
LOC110497723 LOC106601119 coding upstream 1247561 35328793 ~ 35336408 (-)
LOC110497725 LOC106601170 coding upstream 1279781 35361013 ~ 35377653 (-)
LOC110498336 LOC106611177 coding upstream 1311180 35392412 ~ 35396783 (-)
G1616155 NA non-coding downstream 6989 34069568 ~ 34069820 (-)
G1616143 NA non-coding downstream 13066 34063595 ~ 34063743 (-)
G1616144 NA non-coding downstream 13611 34062737 ~ 34063198 (-)
G1616151 LOC106601017 non-coding downstream 22352 34053392 ~ 34054457 (-)
G1616125 NA non-coding downstream 37464 34039091 ~ 34039345 (-)
G1616218 NA non-coding upstream 29781 34111013 ~ 34113740 (-)
G1616234 NA non-coding upstream 50685 34131917 ~ 34132659 (-)
G1616235 NA non-coding upstream 51674 34132906 ~ 34134063 (-)
G1616238 NA non-coding upstream 55634 34136866 ~ 34138001 (-)
G1616248 NA non-coding upstream 71577 34152809 ~ 34153123 (-)
G1615810 hectd1 other downstream 597373 33478593 ~ 33479436 (-)
G1615793 NA other downstream 663592 33412219 ~ 33413217 (-)
LOC110497688 npas3 other downstream 1301105 32770921 ~ 33161896 (-)
G1615357 LOC106602003 other downstream 1419040 32650926 ~ 32657769 (-)
G1615240 NA other downstream 1615230 32458530 ~ 32461579 (-)
G1619119 NA other upstream 2320322 36401554 ~ 36405336 (-)
LOC110497753 spred1 other upstream 2573291 36654523 ~ 36840800 (-)
G1622757 LOC106600509 other upstream 4875792 38957024 ~ 38958974 (-)
si:dkey-229e3.2 LOC106599591 other upstream 5284025 39365257 ~ 39370631 (-)

Expression



Co-expression Network