LOC110497721 (LOC106601106)


Basic Information

Item Value
gene id LOC110497721
gene name LOC106601106
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 34864846 ~ 34919404 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021574034.2
TCAAGGAGTACGAACATGATTCTGAGCCAATCCGTGGTGACTTCCTCAATTTTTTCCAATCGAAAGGAGAGGGAAAATAGCTACCATCACATGTCCCAGTAACTGCAGCTTTTAGTTTGTTAAATCATCTGGAATGGTAGAACTGAGTATTGGGGAAAAGCACAGTGATGGCAATGGGGGGAACCGTTGATTGTGCCTCATAATAGACGTTTCTTTTTGGTCGAGGTTTTAAATGTAATAACTACTGAGCAGCATATATTTAGATAATTACGCGCTTTTTCGGGGCTGAATAGCTGAGAATAAACTGGAGAAGAGGGACGGAAAGACCTAGCCTTTTAATAACTTGGATGGAGGGCAAGTGTGCCTCAGGCACTGTCACTCTGTGGATTACGTGGTGGAGGCAGAACGGGGGAAGTGCGCGTAAAGTGCAGCGGTGCAACGGTCTCCCTGCTGAGATTTGATCTGAGTTCCCCATAGCAGCCACTTTATAGCACTCGGCTCTAGAGACGTACATTCAGCTAAATAGAGCAAGCCGGTATTACTGCGGAGGAAAGCCTCTACTGTTGTGAGGCGCGTCGACGAGCGGCAGGAGAATGGCAAGGTCTTCGGCGAGTCTGAGGGGAAAGCAAACGCCCGTTTTTCACCAAAGGATTCTGTCGAAGCGCGTTGGAATTTGACTGTCTCTTCGTGTTGGTGTTCTTGGATCTTTATTTTAAACTGAAAAGAAAAGGAACACACGTGGATTGGGTTCGGAGGAGCGCAGACCGATGTCAAATTACTCGGGCACAATGAAGAGATGTGCTGGGCAGAGTTGTGGGCTTTGAAATCCAGCGCACCTTGTATTGATATAGCCTAATTTAGCCTAAATCCAATGGGGCAAAACAAAATTGGAACATGGGAAAATATGAAATGTGAGAAAATTCGATACCCCTGATCGTCGGTGCTCAGAGCAGGGCTGGCGTTCCTTTTTAAGGTGTTTGAACCTGACTTACAATGGAAAAActgctggtctgtctgttggttaTTGGAATGGCAGTGAAGGCCCAGATCTGTCCGAAGCGCTGTGTCTGTCAAATACTATCTCCCAATCTTGCAACCCTCTGTGCCAAAAAAGGTCTCCTCTTTGTCCCCCCGAACATTGACAGGCACACCGTGGAGCTACGGCTGGCAGACAACTTCGTCACCAGCATCAAGAGGAAAGACTTTGCCAACATGACCAGGTTGCAGGACCTCACCCTGTCAAGGAATACCATTAGCTTCATCACGCCACACGCGTTTTCTGACCTGGAGAACCTCCGCGCCTTGCACGTGAACAGCAACCGTCTGACCCGGATATCCAACGACACCTTTAGCGGCATGTCCAAGCTGCACCACCTGATCCTCAACAACAACCAGCTGATGTTGATCCACCTGGGGGCTTTCAATGATCTGCTGGCCCTGGAGGAGCTCGACCTGTCCTACAACAACTTGGAGTCTATCCCCTGGGAGGCTATCCAGAGGATGACAAGCCTCCACACCCTCAGCCTGGACCACAACATGATCGACTACATTCCTGAGGAGACCTTTTCTCTTCTGCAAAAGCTCAACCGCTTGGACGTAACCTCAAATAAGTTACAGAAGCTTCCTCCAGATCCTCTGTTCCAGCGGGCCCAGGTTTTGGCCACGTCTGGGATCATGAACCCTTCCTCGTTCGCACTGAGCTTCGGCGGGAACCCACTGCACTGCAACTGTGAGCTGCTGTGGTTGAGGCGCCTGAGTCGAGAGGATGATCTGGAAACATGCGCATCGCCGCAGCACCTCTCTGGACGCTATTTCTGGTCCATCCCAGAGGAGGAGTTCCTGTGTgaacctcctctcatcacccgGTACTCCCATGAGATGAGGGTGCTGGAGGGCCAAAGGGTGGCCCTGAGGTGCAAGGCCAGGGGGGACCCTGAGCCTGCCATACACTGGATCTCTCCAGAGGGGAAGCTGGTGTCGAACTCCTCCCGGACGTTGGTCTACACGAATGGAACCCTGGACATTTTGATCAGCACTGTGAAGGACACAGGATCCTTCACCTGCATCTCGTCCAACCCGGCGGGTGAGGCACATCAGACTGTTGAGCTGCTGATTATCAAACTCCCACACATCTCCAACAGCACCAACAACATCCAGGAGCCTGACCCTGGCTCTTCAGACATCTCCACGTCCACCAGGGCTGGGGCAAATGGCAGCAACCACACTGGAGACACCAAAACTAGTCCGGATAAGAGAGTGGTCATCGCTGAGGCCACATCCTCCACAGCACTCATCAAGTTCAACTTCCAGAGGAATATACCTGGGATCCGCATGTTCCAGATTCAGTACAATGGCAGTTATGATGACTCTCTTGTGTACAGaaTGATTCCCCCCACAAGCAAAAACTTCCTAGTCAATAACCTGGCTGCTGGAACGTCGTATGACCTGTGTGTTCTGGCCATATACGACGACGGTATCACTTCCCTCACCGCCACCCGCGTGGTGGGCTGCGTCCAGTTCACCACCGAGTCTGAGTACCTGCGCTGTCACTTCATGCAGTCCCAGTTCCTGGGAGGCACCATGATCATCATCATCGGCGGCATCATCGTGGCCTCCGTCCTCgtcttcatcatcatcctcatgaTCCGCTATAAGGTCTGCAACACCAGTGACTCGGGCAAAGGCACATTGGTCACCAACGTCCACTCCCAGACCAATGGGGCACAGTCTCAAGGGTGCACCGTCAATCCCTCTGTGTCCAAACAGGCCATGGGAGGGTCGGggtcagagggagggggagggggaggagggtctATAAAGGCCGCTGGGCACGCGCCAGACACTCTGACGGACTCATCTGAGACCTCTCTCCCAGACTGCTCCACTGCTACTTCTCTGGTGAGCCAGAGCTGGAACACGCCTGGCTCCTCAGGGTCTCTGAAGCCAAAGCGCAAGCCTGCGCCAAAGCCCTCCGCTACTGCTTCTGTCACCCCTGAGCCCAAGATAGAGGCACTCCCTAACGCTGAGACCCAGAACACCAACCGCAACAACTCCACGGCTCTGCAGCATCCCCCCGCCCCGGTATTCCACTCCCCCCTACCCTACTCACGCATCAAGGACACGCCCATATTAAGACGCGCACACCCCAGACCATCCTCCAAGTACCTGACCTTACCGGTGGAAGGGGTGAGGGCCAAACGTAGGTACTCTCTAAACGAGGACTCGTCCAAGCACCACTGCTACATTGGGGTAACAAAACTTGGGAATATGTGGTCTAAGCGGAGTAAGTCCATGAATGGGATGCTACTTCAACAGGAAAATATAGACAGTGGCAAGGCCACCTTTTCCAGTTCAGAGTGGATTCTAGAAAGTACTGTGTGACTTttctgtttgtatgtatgtgtgtgattgaatgtgtgtgtggggacatCTGTTTTTGattctttagattttttttgcgtTTCAGTTTACTTTTATTTTTCTAAAACCAATAGTAAAACGGATGCTTGCCTTGTAGTAATCAGAATTTCATCAATGTTCTCCTCTGATGTGGAGAATCTCCAGCAGCTCGGAGCCCAGTGCTCGGCAGTCCATGCAGTGTTTTCATACCCATACAAAAAATTGAGAAAAATAAA

Function

NR:

description
leucine-rich repeat and fibronectin type-III domain-containing protein 5-like

GO: NA

KEGG:

id description
K16358 LRFN5, SALM5; leucine-rich repeat and fibronectin type-III domain-containing protein 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021574034.2 True 3635 mRNA 0.51 3 34864846 34919404

Neighbor

gene id symbol gene type direction distance location
LOC110497713 LOC106601641 coding downstream 783614 34076809 ~ 34081232 (-)
LOC110498334 NA coding downstream 831562 34024150 ~ 34033284 (-)
LOC110498333 NA coding downstream 841406 34021006 ~ 34023440 (-)
tecpr2 LOC106600983 coding downstream 855809 33975022 ~ 34009037 (-)
rcor1 LOC106600978 coding downstream 895629 33958280 ~ 33969217 (-)
LOC110497722 LOC106601115 coding upstream 403338 35322742 ~ 35327947 (-)
LOC110497723 LOC106601119 coding upstream 409389 35328793 ~ 35336408 (-)
LOC110497725 LOC106601170 coding upstream 441609 35361013 ~ 35377653 (-)
LOC110498336 LOC106611177 coding upstream 473008 35392412 ~ 35396783 (-)
LOC110497729 LOC106601178 coding upstream 519722 35439126 ~ 35441887 (-)
G1617140 NA non-coding downstream 34156 34830397 ~ 34830690 (-)
G1617050 NA non-coding downstream 96072 34768481 ~ 34768774 (-)
G1617049 LOC106582599 non-coding downstream 99249 34765125 ~ 34765597 (-)
G1617047 NA non-coding downstream 99745 34764787 ~ 34765101 (-)
G1617040 NA non-coding downstream 105940 34758703 ~ 34758906 (-)
G1617713 NA non-coding upstream 215851 35135255 ~ 35135892 (-)
G1617714 NA non-coding upstream 216788 35136192 ~ 35169270 (-)
G1617838 NA non-coding upstream 386928 35306332 ~ 35306598 (-)
G1617849 NA non-coding upstream 408868 35328272 ~ 35328503 (-)
G1617852 NA non-coding upstream 413792 35333196 ~ 35333568 (-)
G1615810 hectd1 other downstream 1385410 33478593 ~ 33479436 (-)
G1615793 NA other downstream 1451629 33412219 ~ 33413217 (-)
LOC110497688 npas3 other downstream 2089142 32770921 ~ 33161896 (-)
G1615357 LOC106602003 other downstream 2207077 32650926 ~ 32657769 (-)
G1615240 NA other downstream 2403267 32458530 ~ 32461579 (-)
G1619119 NA other upstream 1482150 36401554 ~ 36405336 (-)
LOC110497753 spred1 other upstream 1735119 36654523 ~ 36840800 (-)
G1622757 LOC106600509 other upstream 4037620 38957024 ~ 38958974 (-)
si:dkey-229e3.2 LOC106599591 other upstream 4445853 39365257 ~ 39370631 (-)

Expression


Co-expression Network