LOC110497725 (LOC106601170)


Basic Information

Item Value
gene id LOC110497725
gene name LOC106601170
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 35361013 ~ 35377653 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021574043.2
TCTGCTGGATGTTTAGTTTTACGGAGAGGGAGTACCGGAACTGGACTGTTGTCGCACAATCTTACAACGGTTATATGTACACTTTCTGTCCGCGATTAATACAATAGTTTAGTGGTCTGCGCCATGGCTTTGTACGGGTGTGTCGGAGCCATGGCTTTACCTAGCGAGCTTATCGTCCATATATTTTCATTCTTGTCCGACCGTGACAAGCTTCGGGCCTCGTCCGTGTGCTCTCGCTGGAGGGAGTGTCTGTTTTACCCATCGCTTTGGACGGAGCTGAAGTTGCGTGTCGGAGGTGGTGCAAACTGGGGAGGTTCTGGCATCGAACAGACCCCAAGATTAGAATTTCTCATGAGGAAGTTTGGCGCCTTCGTGCGCGAGCTACATCTCGAGGTTGCCCCTGTGGACGGATATCTAAGCCCACTGAGCGGATTGGAGGGCAGGATAGAACCTGTAGAACGCGACCCTCAATTGCTTGATCGCTGGAAAGACGCAAGGATAACCTATTTGGAACAGGTGTTGTGTGTGCTCAGATGTATTCGAAACAACAGAAATCTCCAGAAACTGAGTCTGTATGGGGATACCTTCATTCTTCAGGATGAAGGCACTGTCCAGAATGCCCATCTCCAGCAGGTTGACCCAGGAGGCAAGAAAATCAAAGAGATCCAACAGCTGTTACTGGAGGTTCTGTCTAACAGCAGGAAGATAAAGTGGCTGTCCTCCACCTTCATGCTGGGTGTGGTGACCCCATGCTCCCTGGCCTCTCTGTCCAACCCCAGCGCAGGCTCCCTGGAGCACCTCGGCTTGCTGGACAACCAGCTGCCTTGCCTGGTCTCACCTGTGGAGCTGGAGCGGCTGGTCCACCTGCGTTCCCTGGCCCTCGACTTCTGTGACTTCACCTCAGACTTGAGCCACCTACTGGCTGGAGGAGACCGTGCTCCGCTACACCGCCTCTCCCTGATGCTCAACGGCGCTGCTCTGGAGGCTAAGCCGCTCGATGGCACCGCCAGTGAGGACGACTGGAAGGCCCTGGTCCAACGCAGCGCTAACCTGCGGGTTTACGTGATGGCACTGGATGTGTGCAGCCAGGACTTGCTGAGGGTGCTAAAACCAAGCCTGCCCCTGGAGAGGATCCACCTGGACAGCTACTCCACCTTGGTCACAGACGGAACCCTGGAGCTCATTGCCCAGCAGTACAACAAGACCCTGAGCCACTTCGTCCTGATGAGGGATGACACCGGCTTCCCTGACCTTGGCATCAACCGAAACGAGGACCCACTGGTCCTACTGGCCTGGCGCTGCGTACACCTCTCTGTATTGGTCATCCACGGCTACACTGTGTGGTCCCACAACCTGGTGGCCATCTCCCGTCTGCGTGGCTCCAGCCTCAAGGTCCTGGCTGTGTCCGAGGAGAGCATTGACTTCGACCCGGACCAGAGGGTCTTCATGCAGGGTGACCCCGTCCACAACCTGGTGAAGGAGGTGTCGCTGGGCCTGGGGCGCGTCTGGCACCCTTCTATGGACTCCAACCTGGTCCTCAGCGAGCCCACCCAGCACTTCCACAGGGAGATGCAGAGCTTCAGCTTGGGCATGTAGGCTAGTGCTGCAGCCGCTAGACCAGGCAGCCATCTgcgtcgtgttcattaggcatcaAACAAAAGAAAACCAGACCTAAACAGGAGGGACCCCACTTCACCAATAAGCAATGCAAATTTTCTGTTACAAAACGTTTTCCATTGAAtgacctaatgaacacaaccctggtctGGTCTTGCCTGCTGCACATGCTCAGTGTTTGTCTTGGGACCTATAAGGTGATTAGATcatctcatttacacattttattttcttctctGTAGCATCCTTTGTGCCGTGTTTATCAGTATTAGCTCTATATTTATATCTATCAATATATATCCTGCTTATGATTAGGAGAGTATAGTCGAATAATTGTTTAGTAGCTAAATGAGAGGTTGGTGTTGCAAGGGGGCTTTTCTACACAGCTAGCTTAGTTAGTTGTATTGCAAGTTTAATTTTTTGCTTTGTGTTTTGTCTGTCAGCAAGTGCTGAGTTATCAGTTAATCCACCTTTACTTTTTGCAATGATGGAATCCTGTGTACTTGTTCGTGCACATTTTTTTTAACGGGAGATTAGTCTAGTAGTCTTCCGGCAGAGGGAGGGACCATGCTGATGGAGTGTGTGGTTAGGCCCCCCCCTCAGCCCAGCAAGATCCTGTCTGCTCTTTTACTTTTGTGTTTTggagatgatattgttgctatgtTATGGGACTAAGATCCTGCTGGTTCTTCTCAACCCAGAGGTGGGATATGATAGGTTTCCACACTGACACTGAGTTTCCTACGTTCTGCTGCAGTACTTAAGTCAGGGGTTAGCGTTGCGAGTCGTACGCTGCAGTTTGCCCTCAGAAAAATCCTCTCTGTCTCAGGTGGGCAAAACATGATTCTAGGAAGATGATGAGGATGTATATACTATGAAAGAATCAGCTAGTCTCTCAGTCTAATGCAGTTTTCTTTTCTTCACATTTGCCTTGGAAAACCCCTTGTTTTCTAGTATCAGTCGTTTTTGCCATCCAATCTGCCCCTTTTTTACCATGGGGTAAACAAACTTAGTCGTACATTTGTTTTAAGATTAAGGTGTTTaaagaatggcaaaaagctaCTCCTTGCACATGTTTCTCTTGTTCACAGCTATGTTCGCTGACTCCAGGGCCACAGTGTTTCACCAGCTGAACGTTGGAAGGAGGGAAGCATTTGCTTGCTTGTTCCAAATCTCAGGATTTTTTCACTTTCAGTAAATTTGTCCATTTGAAGGCTTTCTTTTAATAAAAAGCTTTCTGTTGATCTGCGGGCCAGTGTGCGTGGTGGTGTGACTGGATACTAATACTGTGGAAAGAGCTCTTCCAACACTACGCGGTTTTATTTTTCTAGACGCGCCTTCTCGTGTCCTCTTAACTTTTTAAAAAGGTTAACATCCTCGATGTGCGTCTGTGAAAATACTTTTAATGGCGTTTTCTATAGTGTATTTGACATTTTAGAGCTCAGAGTAGTAGAGGGAATCTGAGGTTGATTGCTCAGTGGTAGAATGTAAATATGAAGCTAACAACCTTAATGTGTAAAGTTGTCTGCTATCCAGAATTCCACAAGCTTCGGGAGCCAGACTTGTCTGATAACGCAGTAGTGTGTGGGGCTTGGAATAGGTGACCTGTGGTTGTTCTATGCTGCTGAGATGTTGGAGCATTCCAGAAAAGAGGAGTGTAGGTTTCTCTTGAGCTTGTGTGGGGGTGTAAAGTTTCAGAAGTGCATACATCAAAGAATTAGCCGTATGGTGTGCTTGAAGCAAAGCATGGTGTACCCCTTTCTCACCAGTGAGCAGGAAACAGCCTTTCTCAGGGTTACTGTCAGTTGAGGAGAGGTGTTCCATGCCTAAAAAATAAATGATGAAAGTTAGGAAGAATCTTTTTTCCAACAAGTCACTGGATTAAACAAAACGGTCTGTCAGCGTGTCTGCATCAGCTGCCAAAGATAACTGTGTGAAACGACCCTTATGAAGTGCCCACGTGCTGGCATAGGGAAGGGCCAATGGCTGATCAGCCAAAATGTACTACTATGACTGCTCCTCCACAAATACTACTAGAAATATACCTACTGAATATGGGGTGAAGATGGACCACGTGGTGCACAGCTGTGCTGTGGCTTGATCAACAACAGAGCTCTCTCAGTTGTCAACAACAGAGCTCTCGCTCACCAGTTTCATTGTGAAAAGTGAATGTCATTTTAGTATAGATAAAATCAAGTTTGGTTGATTCTTTCAGCCCTGTATGCTGCTATCAGACGTGTAAGGAACATTCCACTGGGGAGTTAAAAACCAACAGAAAATGGCCAAATGTCTGAAAATGATTTTAAAATGGTTTTGCTGTGTGAAGTCTTATAGAAGTGGTTGTGTAGCCCAGTCTCACTCTGCATGTTAACAGGCATAGCAGTGGAGGTATTTTCTTTTATTTTTATACTCTGGAGAAACATACCATTTGGGTTATTACAGCTTACAAATCAGTTGGTTcccttttttttttcttgttttttatgcTATCACAATCCACATCTCTCTTGTTGAAAAGGAGGAACCTATATAGCAACAGTGAGCTGCTTGAGGGCAGGTCCATCTGAGAGTTAACTGTTACCTGTAGAACCTCATTGTGCTGCAGAAGCTACAGCTAAATGACCTCATACCAGCCTTATTAAGAGCATAAACGCTTGACGTCAAGAGACCTGAGTGAGGAGAATTCTGTTTTGTTTTATTCCATTATTAAAAACCTGCACCACTATCATACCACAAGTTCACTGTTGTGGGGGTCAGGAGGGAGGTGAGCTTAAACATGTCACATCTCTTAATGGCTGGCTTGCATTACAGCCAAGTCAAACACATATAATCCAGTGGCTTTTATTTTTCTGTCACTTACAAATGGAAATAACAATGTGATTGTTTTAAGATCTTGATTTTTTTGGAAGCCAAACTCCGTTTCAAAGGCTACCGTGGGTTACAGACATGGTCTCTATGAGACTGGCCAGCAGGCGCCAGTTTTAAGTGGTATGAATGTTGTGCATTTGTTTAAAATCAGGATATTTTATTGCAAAATAAGTCATGCATTACAAGTGGCCACCATGGGGCACTAGCAGTGCGAACACCTAGGCTGTGTCCTTATAAGCTTTCGGGGAAGAAAATAACTGCATATTTGTATATATCAATACATAATGTATACTCTTATGCAACATATGTCTGGGTTCTATTTATGAACATTTGTAAGCTTTAAGATGGTTTTACCATTTTTGCTAAATGTTGAAATATTTGGACAGGTGTGTTCTGTCAACTTTGTCTCAAGTGAGCGCATAGCGttggatatgtacagtacatctgCAAATGGGAACTCCACTGGTGCAGGTGTGAAAATGGCAAGTGTAGAGAATTTTGATTTGAAAAAGTGATGCAAGATAACTAAAGGAAAAAGCCTAAGTGACATAGTGTAAACCAGCTGAATGTTGAATGGTTCTTTTTAAACCAGTGAATAAAAGCATTAAACACAAA
>TU1851363
CCATGGGGCACTAGCAGTGCGAACACCTAGGCTGTGTCCTTATAAGCTTTCGGGGAAGAAAATAACTGCATATTTGTATATATCAATACATAATGTATACTCTTATGCAACATATGTCTGGGTTCTATTTATGAACATTTGTAAGCTTTAAGATGGTTTTACCATTTTTGCTAAATGTTGAAATATTTGGACAGGTGTGTTCTGTCAACTTTGTCTCAAGTGAGCGCATAGCGttggatatgtacagtacatctgCAAATGGGAACTCCACTGGTGCAGGTGTGAAAATGGCAAGTGTAGAGAATTTTGATTTGAAAAAGTGATGCAAGATAACTAAAGGAAAAAGCCTAAGTGACATAGTGTAAACCAGCTGAATGTTGAATGGTTCTTTTTAAACCAGTGAATAAAAGCATTAAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021574043.2 False 5100 mRNA 0.46 4 35361013 35377653
TU1851363 True 418 lncRNA 0.37 1 35361018 35361435

Neighbor

gene id symbol gene type direction distance location
LOC110497723 LOC106601119 coding downstream 24605 35328793 ~ 35336408 (-)
LOC110497722 LOC106601115 coding downstream 33066 35322742 ~ 35327947 (-)
LOC110497721 LOC106601106 coding downstream 441609 34864846 ~ 34919404 (-)
LOC110497713 LOC106601641 coding downstream 1279781 34076809 ~ 34081232 (-)
LOC110498334 NA coding downstream 1327729 34024150 ~ 34033284 (-)
LOC110498336 LOC106611177 coding upstream 14759 35392412 ~ 35396783 (-)
LOC110497729 LOC106601178 coding upstream 61473 35439126 ~ 35441887 (-)
ralgapa1 ralgapa1 coding upstream 82559 35460212 ~ 35538762 (-)
LOC110497737 LOC103380713 coding upstream 270051 35647704 ~ 35661845 (-)
LOC110497733 LOC106601249 coding upstream 311816 35689469 ~ 35703718 (-)
G1617822 LOC106601134 non-coding downstream 11742 35345642 ~ 35349271 (-)
G1617856 NA non-coding downstream 20642 35339953 ~ 35340371 (-)
G1617854 NA non-coding downstream 22693 35337717 ~ 35338320 (-)
G1617852 NA non-coding downstream 27445 35333196 ~ 35333568 (-)
G1617849 NA non-coding downstream 32510 35328272 ~ 35328503 (-)
G1617881 NA non-coding upstream 4924 35382577 ~ 35383134 (-)
G1617882 NA non-coding upstream 5552 35383205 ~ 35383441 (-)
G1617883 NA non-coding upstream 8452 35386105 ~ 35387259 (-)
G1617888 NA non-coding upstream 9814 35387467 ~ 35388027 (-)
G1617887 NA non-coding upstream 11066 35388719 ~ 35389427 (-)
G1615810 hectd1 other downstream 1881577 33478593 ~ 33479436 (-)
G1615793 NA other downstream 1947796 33412219 ~ 33413217 (-)
LOC110497688 npas3 other downstream 2585309 32770921 ~ 33161896 (-)
G1615357 LOC106602003 other downstream 2703244 32650926 ~ 32657769 (-)
G1615240 NA other downstream 2899434 32458530 ~ 32461579 (-)
G1619119 NA other upstream 1023901 36401554 ~ 36405336 (-)
LOC110497753 spred1 other upstream 1276870 36654523 ~ 36840800 (-)
G1622757 LOC106600509 other upstream 3579371 38957024 ~ 38958974 (-)
si:dkey-229e3.2 LOC106599591 other upstream 3987604 39365257 ~ 39370631 (-)
G1617870 NA non-coding upstream 4635 35366070 ~ 35366469 (-)
G1617873 NA non-coding upstream 10972 35372407 ~ 35372808 (-)

Expression


Co-expression Network