LOC110497737 (LOC103380713)


Basic Information

Item Value
gene id LOC110497737
gene name LOC103380713
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 35647704 ~ 35661845 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021574062.2
TTGATGCTGAGTGAGGGATCCAGGCTGCCTGTCCTGCAGTGGGAAAATGCGGAAGTGAGTGAGGACGGTTTTCAGCGGCGGAGGAATACACCAAGCTATATAGACACAGATCGCGAGAGCTACACAACTTCAGCCCATCATTAGAGGTCCACGGGAGCTGGTCAGTCTCGTAGTCTAGTTttagaaaacaaacaaacaaaccaaccaaTCCAGCGCCGTCAGACATGgCCGACCAACTAACAGAGGAGCAGATTGCCGAGTTCAAGGAGGCGTTCTCCTTGTTCGATAAAGACGGCGATGGCACCATCACAACCAAAGAGCTGGGCACCGTCATGAGGTCGCTCGGACAGAACCCCACCGAGGCAGAGCTGCAGGACATGATCAACGAGGTCGACGCTGATGGCAACGGCACCATTGATTTCCCAGAGTTCCTCACTATGATGGCCAGGAAAATGAAGGACACAGACAGCGAGGAGGAGATTCGTGAGGCGTTCAGGGTATTCGACAAGGATGGGAATGGCTACATCAGTGCAGCAGAGCTCCGTCACGTCATGACAAACCTGGGAGAAAAGTTAACAGACGAGGAGGTCGACGAGATGATCAGAGAAGCCGACATTGACGGAGACGGACAGGTCAACTATGAAGAGTTTGTACAAATGATGACAGCAAAATGAAGCTCCCCTACCCTTCTCCTGACCTTAGAAGACAAAAAAAATCAGTCAAATGTTTTACTTACCTCTTGCAAAAATATAAATTTATTCATACTGTTTCTGTATAGAAAACATAACTGAATGTTGAAAAATGAAAAAATCAGTCCAcataaaagtaaaaataaatacaatttaaaaaaacatctgCATGTACTGGTTAGTGGTCCTGTCCCCAAAGATGagttagacatcagtaataacaGAAATAATACCTGTAAACAAAACCGTAAACAAAACCGTCAACAACTAAAGAAAGCACTTGGCAAACTGCTTATTGGTTCCAGTTGCTAATGGTAACGTTTGGGCTGGCCAATCGTCTTTTCTTTTCCTGTTTCTGTTCTTCATGCATGCAGCTTGAGACTGGTGACGCAGTCCAGCCAATGGGCTCACTCTGATTCCACAGCGGTGTCGAGGGTACCGCCGTGGGGTTTTGGTACAGTCtatgttgagagaaagagataagagctcggatgggggatggggggggggggtcatactaAACTCGCATAGAGATGAAATGAATGGGACCTTTGCAGTTTGCttaattacaaaaaatatatttttaagaaaattatcatttaaaaaaaatcattttagAACTGTTTGGCATGTTGGGAATATTTGGACTTCTGTTTCCTTGTTATGCGTTGAACTTTGGGTATGATTCGAGGGGGTGGGAGGTGAGCTGAAGAGTCTGGTTTTTCCGGACTCTTTACCTGCTAGGGGAGGTCTTTTTGGCAAGGAAACGCGGTTATATCGTCAATGTTTTATCTTCTGTTTCTCGACTCTGATCATGGTTGAGTGTGGGTTTTGATCGATCTACAGCGCATCTAGGGTCTTCAACACCTGAGTCTTCTCTAGACTGTTCATCTTGTTCAGTTTAGTTCATTCCAAGTTGTACATGCTagtcttttaatttttttttccaATAAAAGACCATGAACTTAA

Function

NR:

description
PREDICTED: calmodulin

GO:

id name namespace
GO:0022400 regulation of rhodopsin mediated signaling pathway biological_process
GO:0001975 response to amphetamine biological_process
GO:0007190 activation of adenylate cyclase activity biological_process
GO:0045087 innate immune response biological_process
GO:0010881 regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion biological_process
GO:0051412 response to corticosterone biological_process
GO:0007202 activation of phospholipase C activity biological_process
GO:0005513 detection of calcium ion biological_process
GO:0002027 regulation of heart rate biological_process
GO:0000086 G2/M transition of mitotic cell cycle biological_process
GO:0030168 platelet activation biological_process
GO:0002576 platelet degranulation biological_process
GO:0038095 Fc-epsilon receptor signaling pathway biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0035307 positive regulation of protein dephosphorylation biological_process
GO:1901841 regulation of high voltage-gated calcium channel activity biological_process
GO:1901844 regulation of cell communication by electrical coupling involved in cardiac conduction biological_process
GO:0043647 inositol phosphate metabolic process biological_process
GO:0043388 positive regulation of DNA binding biological_process
GO:1901339 regulation of store-operated calcium channel activity biological_process
GO:0008543 fibroblast growth factor receptor signaling pathway biological_process
GO:0051000 positive regulation of nitric-oxide synthase activity biological_process
GO:0048011 neurotrophin TRK receptor signaling pathway biological_process
GO:0032465 regulation of cytokinesis biological_process
GO:0005980 glycogen catabolic process biological_process
GO:0051343 positive regulation of cyclic-nucleotide phosphodiesterase activity biological_process
GO:0032516 positive regulation of phosphoprotein phosphatase activity biological_process
GO:0016310 phosphorylation biological_process
GO:0046209 nitric oxide metabolic process biological_process
GO:0006006 glucose metabolic process biological_process
GO:0060315 negative regulation of ryanodine-sensitive calcium-release channel activity biological_process
GO:0060316 positive regulation of ryanodine-sensitive calcium-release channel activity biological_process
GO:0007173 epidermal growth factor receptor signaling pathway biological_process
GO:0034704 calcium channel complex cellular_component
GO:0030426 growth cone cellular_component
GO:0005813 centrosome cellular_component
GO:0000922 spindle pole cellular_component
GO:0005829 cytosol cellular_component
GO:0005576 extracellular region cellular_component
GO:0005876 spindle microtubule cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0030017 sarcomere cellular_component
GO:0043548 phosphatidylinositol 3-kinase binding molecular_function
GO:0043274 phospholipase binding molecular_function
GO:0017022 myosin binding molecular_function
GO:0031800 type 3 metabotropic glutamate receptor binding molecular_function
GO:0005509 calcium ion binding molecular_function
GO:0008179 adenylate cyclase binding molecular_function
GO:0030235 nitric-oxide synthase regulator activity molecular_function
GO:0019904 protein domain specific binding molecular_function
GO:0050998 nitric-oxide synthase binding molecular_function
GO:0048306 calcium-dependent protein binding molecular_function
GO:0005246 calcium channel regulator activity molecular_function
GO:0072542 protein phosphatase activator activity molecular_function
GO:0031432 titin binding molecular_function
GO:0044325 ion channel binding molecular_function
GO:0016301 kinase activity molecular_function
GO:0031996 thioesterase binding molecular_function
GO:0031997 N-terminal myristoylation domain binding molecular_function

KEGG:

id description
K02183 CALM; calmodulin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021574062.2 True 1658 mRNA 0.44 6 35647704 35661845

Neighbor

gene id symbol gene type direction distance location
ralgapa1 ralgapa1 coding downstream 108942 35460212 ~ 35538762 (-)
LOC110497729 LOC106601178 coding downstream 205817 35439126 ~ 35441887 (-)
LOC110498336 LOC106611177 coding downstream 252384 35392412 ~ 35396783 (-)
LOC110497725 LOC106601170 coding downstream 270051 35361013 ~ 35377653 (-)
LOC110497723 LOC106601119 coding downstream 311296 35328793 ~ 35336408 (-)
LOC110497733 LOC106601249 coding upstream 27624 35689469 ~ 35703718 (-)
zgc:174356 LOC106601284 coding upstream 233767 35895612 ~ 35935389 (-)
LOC110497741 LOC106601320 coding upstream 563382 36225227 ~ 36237234 (-)
ccdc88c LOC106601343 coding upstream 578935 36240780 ~ 36323039 (-)
il17a/f1 LOC106600843 coding upstream 706941 36368786 ~ 36370367 (-)
G1618163 NA non-coding downstream 1356 35646123 ~ 35646348 (-)
G1618162 NA non-coding downstream 1693 35645788 ~ 35646011 (-)
G1618137 NA non-coding downstream 36228 35611177 ~ 35611476 (-)
G1618105 LOC106601235 non-coding downstream 37182 35546000 ~ 35610522 (-)
G1618107 NA non-coding downstream 43810 35602940 ~ 35603894 (-)
G1618184 NA non-coding upstream 43198 35705043 ~ 35705339 (-)
G1618186 NA non-coding upstream 44278 35706123 ~ 35706815 (-)
G1618193 NA non-coding upstream 52764 35714609 ~ 35714857 (-)
G1618197 NA non-coding upstream 56709 35718554 ~ 35718821 (-)
G1618198 NA non-coding upstream 57275 35719120 ~ 35719348 (-)
G1615810 hectd1 other downstream 2168268 33478593 ~ 33479436 (-)
G1615793 NA other downstream 2234487 33412219 ~ 33413217 (-)
LOC110497688 npas3 other downstream 2872000 32770921 ~ 33161896 (-)
G1615357 LOC106602003 other downstream 2989935 32650926 ~ 32657769 (-)
G1619119 NA other upstream 739709 36401554 ~ 36405336 (-)
LOC110497753 spred1 other upstream 992678 36654523 ~ 36840800 (-)
G1622757 LOC106600509 other upstream 3295179 38957024 ~ 38958974 (-)
si:dkey-229e3.2 LOC106599591 other upstream 3703412 39365257 ~ 39370631 (-)
G1623037 LOC106586451 other upstream 3734223 39396068 ~ 39411784 (-)

Expression


Co-expression Network