LOC110497733 (LOC106601249)



Basic Information


Item Value
gene id LOC110497733
gene name LOC106601249
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 35689469 ~ 35703718 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_021574056.2
TCCATCAGTTTTCATCATGTCGATTTTTCTTCATTTTGATATGCTTCGCTTGCCATACTTTGACGTATTACGTAAACGACGCTGACAGACCGGATAGCAAGCTATGGGTCAAAGTCAGAGTGGAGGACATGGACCCGGGGGAGGAAAAAAAGACGACAAGGATAAGAAAAAGAAATATGAACCACCAATCCCCACCAGGGTTGGGAAGAGGAAGAAAAAGAGCAAGGGACCTGATGCTGCCAGCAAGCTACCTCTTGtaactccACATACACACTGCAGGCTGAAGCTGCTGAAGCAGGAGCGGATCAAAGACTACCTGCTGATGGAGGAGGAGTTCATCAGGAACCAGGAACAGATGAAGCCCCTTGAGGAGAAACAAGAGGAGGAGAGGTCTAAGGTAGATGATCTGAGAGGAACCCCCATGTCAGTGGGGAACCTGGAAGAGATCATCGATGACAACCACGCCATCGTTTCTACGTCTGTGGGCTCTGAGCACTATGTCAGCATCCTCTCCTTTGTAGACAAGGACCTGCTGGAGCCGGGCTGTTCCGTCCTTCTCAaccacaagGTCCATGCCGTCATTGGGGTCCTAATGGATGACACTGATCCTCTTGTGACAGTGATGAAGGTGGAGAAGGCCCCACAGGAGACGTACGCTGACATTGGTGGACTGGATAACCAGATCCAGGAAATTAAGGAGTCTGTGGAGCTCCCTCTGACCCATCCGGAGTACTATGAAGAGATGGGCATCAAACCTCCTAAAGGAGTCATTTTGTATGGCGCACCAGGGACCGGGAAAACCCTACTGGCCAAGGCGGTGGCTAACCAGACGTCCGCAACTTTCCTGCGTGTGGTGGGCTCTGAGCTGATCCAGAAGTACCTGGGGGATGGGCCTAAGCTGGTCCGAGAGCTGTTCAGGGTGGCCGAGGAACACGCACCCTCCATTGTCTTCATCGATGAGATCGATGCCATCGGGACTAAAAGGTATGACTCTAACTCAGGAGGAGAGCGGGAGATCCAGAGGACTTTGCTGGAGCTGCTTAACCAGCTGGATGGCTTTGATTCCAGAGGCGATGTCAAGGTCATTATGGCCACCAACAGGATAGAGACCCTGGACCCCGCACTCATCAGACCAGGCCGTATTGACCGTAAAATAGAGTTCCCCCTGCCGGATGAGAAGACCAAACGAAGGATCTTCCAGATCCACACCAGCAGGATGACTGTGGCAGACGATGTGACCCTGGACGAACTGATCCTGGCCAAGGATGACCTCTCCGGAGCTGACATCAAGGCCATTTGTACAGAGGCAGGGCTGATGGCTCTGAGAGAGCGCAGGATGAAGGTGACGAACGAGGACTTTAAGAAGTCGAAGGAGAACGTGTTGTATAAGAAACAGGAAGGGACACCAGAGGGACTATACCTCTAACAGGGGCGGAACGCACTTCAGAAATGTCCTGTTCTTTCACTTACTGCTTCAAAACTGTTATTACCTAGTAAAACCTTTCATACATGTTCATTGTATAGTTTGGACTAGATGTAGCCAGCTGTTTGGTATTCAATTCTGCAGCTGTTAAAGTAAGTTGGCTttctgaacaaatgaacaatctTAGGTTATGGTAATAGACCATAATACAAGTATCACCTCTTGAAGTAAATAAACAATTTGAAACAATTCAGATTTTTATTTCAAATAAAGTAcgtattgatttttttttt

Function


NR:

description
PREDICTED: 26S protease regulatory subunit 4

GO:

id name namespace
GO:0030163 protein catabolic process biological_process
GO:0000502 proteasome complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function

KEGG:

id description
K03062 PSMC1, RPT2; 26S proteasome regulatory subunit T2

RNA


RNA id representative length rna type GC content exon number start site end site
XM_021574056.2 True 1716 mRNA 0.49 11 35689469 35703718

Neighbor


gene id symbol gene type direction distance location
LOC110497737 LOC103380713 coding downstream 27624 35647704 ~ 35661845 (-)
ralgapa1 ralgapa1 coding downstream 150707 35460212 ~ 35538762 (-)
LOC110497729 LOC106601178 coding downstream 247582 35439126 ~ 35441887 (-)
LOC110498336 LOC106611177 coding downstream 294149 35392412 ~ 35396783 (-)
LOC110497725 LOC106601170 coding downstream 311816 35361013 ~ 35377653 (-)
zgc:174356 LOC106601284 coding upstream 191894 35895612 ~ 35935389 (-)
LOC110497741 LOC106601320 coding upstream 521509 36225227 ~ 36237234 (-)
ccdc88c LOC106601343 coding upstream 537062 36240780 ~ 36323039 (-)
il17a/f1 LOC106600843 coding upstream 665068 36368786 ~ 36370367 (-)
LOC110497747 LOC106601376 coding upstream 712008 36415726 ~ 36419930 (-)
G1618163 NA non-coding downstream 43121 35646123 ~ 35646348 (-)
G1618162 NA non-coding downstream 43458 35645788 ~ 35646011 (-)
G1618137 NA non-coding downstream 77993 35611177 ~ 35611476 (-)
G1618105 LOC106601235 non-coding downstream 78947 35546000 ~ 35610522 (-)
G1618184 NA non-coding upstream 1325 35705043 ~ 35705339 (-)
G1618186 NA non-coding upstream 2405 35706123 ~ 35706815 (-)
G1618193 NA non-coding upstream 10891 35714609 ~ 35714857 (-)
G1618197 NA non-coding upstream 14836 35718554 ~ 35718821 (-)
G1618198 NA non-coding upstream 15402 35719120 ~ 35719348 (-)
G1615810 hectd1 other downstream 2210033 33478593 ~ 33479436 (-)
G1615793 NA other downstream 2276252 33412219 ~ 33413217 (-)
LOC110497688 npas3 other downstream 2913765 32770921 ~ 33161896 (-)
G1615357 LOC106602003 other downstream 3031700 32650926 ~ 32657769 (-)
G1619119 NA other upstream 697836 36401554 ~ 36405336 (-)
LOC110497753 spred1 other upstream 950805 36654523 ~ 36840800 (-)
G1622757 LOC106600509 other upstream 3253306 38957024 ~ 38958974 (-)
si:dkey-229e3.2 LOC106599591 other upstream 3661539 39365257 ~ 39370631 (-)
G1623037 LOC106586451 other upstream 3692350 39396068 ~ 39411784 (-)

Expression



Co-expression Network