LOC110497741 (LOC106601320)


Basic Information

Item Value
gene id LOC110497741
gene name LOC106601320
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 36225227 ~ 36237234 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021574067.2
CTAGGGTTGTAATGTACTGGGAAGGGGGAAGGAAATTACTCTGAATGATGATATAGTTCAAGAAGATATGCTGACAAAATAAGGCACTAGCGAAACCAGCATTCTTATAATGAAAGTAGGGTTTCTCAGAATCTGTTGGTCTGTGGCACTGAGCCCTATAAAGCCCGTAACCACCGTGCCCTCCCGTCTCTAACGCCAGATGTGAGCAGTGCCTCTTTCGCGCTACAGCTGCCTTACTTTCGGATTGGTCAGTAACCAAGCGCTTGGTTCTTCAAAGCACTCAGAGAGTTACTGCCGAGAAACCTAGCGACTCTCACCATCAAAGACCGCGAACAGCCTATTTCAAGGGGCGTGGATAAGAGCTGAGTGAGTGGAATGGCCAGGACTGTCGTTGTTTTGAGTCAAACTCACTGTGCTGGGCCCCACAGCCTGGTACTGTGTGGGTGCTAACAGAGAGGAACAAAGCATGTGGACCACGTCTGCTATGACAGTCAACATGTCTGAGGCTGAGCCAGATCACATTAACTGCACCATCAGCCATGAGATCCACCAGTACCTGTTCTCTGTGGCCTACATCCTGGTTCTTTTGATTGGCGTTCCCACCAACGCCTACTCCCTCTACCATGCCTGGCTTCAGCTGAGAGACAAGAACGAGCTGGGGATCTACCTGCTCAACCTGACCGTGTCAGACCTCCTCTACCtggcctctctgcctctctggctGCAGTACATCTTCCAGGGAGATGACTGGAGACAAACTGAGTGGCTTTGCCAGCTGTGTGGCTTCCTGCTCTATGAAAACATTTATGTTAGTATCGGATTCTTATGTTGTATCTCTATAGACCGTTACCTGGCCGTAGTGTACCCATTCCGCTTCACAGCTTTTCGAAGTATGCGGGCAGCCACGTTGGCCAGCGCCTTCATCTGGCTGAAAGAGATTGCTGTGGGTGTTGTCTTTTTCAGACACAAGGAGCTAAGCAGGGACAGCACCAACCAATCAGTGTGCTTTGAGCACTACCCCATGCAGCCGTGGGAGTACCCAATAAACTACTACCGTTTCGCCGTTGGCTTCCTGTTCCCACTAGGCATCCTGTCCGTGTCGTATCTCCGCGTCCTGCGGGCGGTCGGAAAAAGTGTAGGCACGCAAAGCACCCAGAAAACGCGCATCAAGAACCTGGTGACCAGCACCATTGTCATTTTCCTGGTGTGTTTCTCTCCATACCACGTGTTCCTGCTGGTGCGTACCATCTTAGAAAGAGACTGCCCCTTCATAATCAACATCTTCAACTACTACCACGTCTCCCTGCTGCTCACCAGCTTCAACTGCGTGGCCGACCCAGCGCTGTACTGTTTCGTCAGTGAGAGGGCCCAGCAGGGGATCCAACAAGCTCAGGAGGCCTGTAGGCAGgccctctgctgctgctgccacaGGGGACAGCACAGCCCCGTCACAACCACAGGTACAGACTCCGAGGTGGCCACCTCCAACGAGAACAGAAAAGTCTCAGTCACACTGCTGACGTCTAGTAGTAATATTAATAATACATGGGTTTTATGAAGCTCTTTTGAAGGACCTAAAGACACTTGAATAGTAGACTAGGAGCTAGGGTTGGATTTGGATGAGAGAGAAGGTCGGGGAAAAAATACATACAGTGACAGGACATTGGACATGAGACATTGGACAATGATATGATTATGGGCAGTCCTATGAGCAGTAACATGTGAAGGTCATAGGAGCCCATCAAATTCGCTGttaaatgaaagctaagagtctatatttttGAGAAATTAACGCATATATACACTTTTCAACCATTTCCAATGCAAAGCATGtggaataagcaaaggctttgatttctgttCAACCAGATAGAAAAGGGGTCTTAGAtaacatctaccagaaaaagtcttaaaggtatcagaaatacatgAAAACCCAGtaatgttgaagtaaagacccTTCCAAgtaatatctatatatttatatttagttttgcagaaatgttttgacaTCTGTAAGTTTAAGGAGTATTGCCTAGTGTCTCGTCATTCTCTTACCAGAaacatatctttaagatattttctcatttctctccctcatgaggagggaggataatgaaagttcacataaGTAACAATTAAAGGTAGACCTACCGATTTGAGTGTTTTTACTGATAACAATTTGGTTTATGATTTATTAAGTGATTTAAAACGTGTCATTTTGTTACCAAATTGGTAACGGAATGACTTCTCCAGTTGAAGTCACTTCTCCTGGTTCTTATTGCCACCTAGCCATGACTCTCATGAGCCCTCTCtatttccatttactgtaaccagccctctcacccactgagcaccgacGGAGACCGCGCGTCCTTGGACGTGGAAAAGTAGTTTACATTTTGTCAGTCCAAATCTaaaccaatcatagatgtctgtttctactgtactgtactgaccttTACTATGCTGAACTATACTGCGCTGTACTGACATTTACTTttctgaactatactgtactgtactgaccttttactgtactctgctctactgtgctgtatttTGGTGCTGTACTTTGTTGTCCAAACGTGTGAAACAATgacgtctatgattggtacaGATTTGGTCCGAACCGgaccaaccaaatttggtcttgtttggggccggagctcattagaataatagccaTTGTGTAGAATAATGCATTACATTTGTTCTACCTTTTGTGTACCTTTTTTAGGATACATCACAATGAGGAGAAGGACATTCATAATGATGCACttctgtatagtacagatcaTGGTCTCATGATGTGACCATCTGTTTCCGGGTgttaatccacttcacttactgtatgtagttcaataaccaaagtAGATTTTTCTTTTCAAACTCAAGTTGTCATATCACTGCTGACACCGATTCTTTCTGCaaacatctttgaatcttaatttggAGTAAAACGTGGTCCAAAAAAACTGAGGGAGATTATATTggcattctgttaccaaactttacatctgcactgttcttcgagtcaatgtttttgtaaaatattcagtggaaattgttaaaagtggTCCTTGTGCATAGAGCTGTATGCTTTGTTGAACTTtgcaatcaatggtttttgtcTGGCATACAGTCTGTGTCATTCTGTTACAGTGGCCTTGGACATATGACATAGTAAAAGTGTTATAATTAAGGTAATAACATGTGAATATGAtgctttttgttttttaaatgaatgtTTTATACTTTCTTTAACATGTGCAGGACACTTGCACAGGTGATGCTGCCTTGTGTATAAGCCTGAGTTGAAAACTATCTTCAATACCAAGTTCTTTCTGCAACATTGTCAGGTTTTAATCTTTCATCACATTATGTAATATTCATTGTGTGTTTATGGTTTTGAGAGTGACTCTGAATTCATATGTCATATCAGCACAGATTCGACATATCAGCACAGATACGACATATCAACATAGCCTCTTGACCAAACTTATCTCTATTTCCTGTTTGTTTCTTTttaagtacactgaacaaaaatatataaagtgttggtttcatgagctgaaataaaatatcccagaaatgtttcatacacacaatagcttatttctcttaa

Function

NR:

description
ovarian cancer G-protein coupled receptor 1-like

GO: NA

KEGG:

id description
K08408 GPR68, OGR1; ovarian cancer G-protein coupled receptor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021574067.2 True 3628 mRNA 0.43 2 36225227 36237234

Neighbor

gene id symbol gene type direction distance location
zgc:174356 LOC106601284 coding downstream 289838 35895612 ~ 35935389 (-)
LOC110497733 LOC106601249 coding downstream 521509 35689469 ~ 35703718 (-)
LOC110497737 LOC103380713 coding downstream 563382 35647704 ~ 35661845 (-)
ralgapa1 ralgapa1 coding downstream 686465 35460212 ~ 35538762 (-)
LOC110497729 LOC106601178 coding downstream 783340 35439126 ~ 35441887 (-)
ccdc88c LOC106601343 coding upstream 3546 36240780 ~ 36323039 (-)
il17a/f1 LOC106600843 coding upstream 131552 36368786 ~ 36370367 (-)
LOC110497747 LOC106601376 coding upstream 178492 36415726 ~ 36419930 (-)
LOC110498571 NA coding upstream 353699 36590933 ~ 36593040 (-)
LOC110497749 LOC106601399 coding upstream 404353 36641587 ~ 36674532 (-)
G1619002 NA non-coding downstream 92196 36132802 ~ 36133031 (-)
G1619000 NA non-coding downstream 94545 36130460 ~ 36130682 (-)
G1618999 NA non-coding downstream 95332 36129226 ~ 36129895 (-)
G1618996 NA non-coding downstream 98116 36126805 ~ 36127111 (-)
G1618985 NA non-coding downstream 102059 36122916 ~ 36123168 (-)
G1619115 NA non-coding upstream 110340 36347574 ~ 36350149 (-)
G1619147 NA non-coding upstream 192037 36429271 ~ 36429510 (-)
G1619155 NA non-coding upstream 201869 36439103 ~ 36439305 (-)
G1619512 NA non-coding upstream 283859 36521093 ~ 36521347 (-)
LOC110498336 LOC106611177 other downstream 828444 35392412 ~ 35396783 (-)
G1615810 hectd1 other downstream 2745791 33478593 ~ 33479436 (-)
G1615793 NA other downstream 2812010 33412219 ~ 33413217 (-)
LOC110497688 npas3 other downstream 3449523 32770921 ~ 33161896 (-)
G1615357 LOC106602003 other downstream 3567458 32650926 ~ 32657769 (-)
G1619119 NA other upstream 164320 36401554 ~ 36405336 (-)
LOC110497753 spred1 other upstream 417289 36654523 ~ 36840800 (-)
G1622757 LOC106600509 other upstream 2719790 38957024 ~ 38958974 (-)
si:dkey-229e3.2 LOC106599591 other upstream 3128023 39365257 ~ 39370631 (-)
G1623037 LOC106586451 other upstream 3158834 39396068 ~ 39411784 (-)

Expression


Co-expression Network