ccdc88c (LOC106601343)


Basic Information

Item Value
gene id ccdc88c
gene name LOC106601343
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 36240780 ~ 36323039 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021574068.2
ATGATGCTGTGTGTGAAATAAATAATGTGCGGCAGAGGCAGGCCATGGAGGTGTACAGAACTTGTCGTCGCCGGAAGCATCTGTAACTTTTCTTTTCATGGCCGCGGCAACAATGTTTCATTTTTGATTACTCTTCTTTTTCGATGTTCTTCCAGTCAGTTTACATGGGCAATGTAGCTTGAACATGTGAACGCGTTTACTTTGTTCTGCTCTTATGGAAGTTTTAGATTAATTTAGTCTAAAACTGGAGTCTGAACGCTATAATTACCCCCCAAAATTGAATCCCTGTGACCTGCACTGGATTTAAATTTTGTAAAATATAAAAGGCACTTTTTTGCGTCTTCGGAATCTATATCGACGTGAAGATTTGTTTTCGCTAGATCCCCAACAACGTGCGGTTTATGTTCGATGCCTCACGGCATTGTTCTGTCTCGACCAGGCATGTAAGGTCCCTCGAGCTGAGGAATGAGTGGCCGCGAGCAATCGGGCGGTGAACACTATTTTCGGATTTAAGAACTGGGTGGAATATCTGAAGTTTCTGAACATGGATATTACAGTGTCAGAGTTGATGGGAAACTTCATGGATACGCCGCTGGTGGTGTGGgTGAAGACCTTTGGACCCCTGGGCTCTGGCTCAGAGGACAAACTCTCCATGTTCATGGATCTGGTGGATGGTGTCTTCCTGCACAAGATCATGACACACATAGACCCCAGCCCCACAAATCAGAGAGTGAATAAGAATGTGAACAATGATGTGAACCTACGAATCCAGAACCTCAACATTGTGATCAGGCACATCAAGAACTACTACCAGGACAGTCTCCAGCAGCTCATCCTGATGACCCTGCCTAATGTGCTGACCATTGCGAAGGACCCCCTCTCAGGCAAGGGCATGGAGGAGGTGAAGAGACTGCTGCTGTTGATCCTAGGCTGTGCTGTACAGTgtgagaggaaagaagagatcaTTGAGAAAATCAAACTGCTCGACATCGAGAAGCAGGCAGCCATCGTCTCCCACATTCAAGAGGTGACCCATAACCAGGAGAATGTGTTGGACATGCAGTGGCTGGAGCTGCCAGACATGCCCCCTGAGGAGCTCAACCCCCTGTCCCGTAACATGGCCCTGCACCTCCGCAAACTCATAGATGAACGAGATGAATGTGCAGAGGTGATCGTGGAGCTGACCCAGGAGAAGGACTACCTCCAGTCCCAGCAGCCCTCCAATCACATGGGTTACCCCTGTCCTGAGAGGAATGTGTTGGGCCTGGACGGACCCGTCTCACTGCTGTCCAAAGAGGACCGCCAGCACCTGGCTGTGGAGCTGGCCGACACTAAAGCCAAACTGAGACGCTCACGGCAGGAACTGGAGGAGAAGACTGAGCATCTGATGGATACCAAACATGAGGTGGAGAGGCTGGACCTGGAGATGCAGAAACTCAAGCAAGAGAACATGCAGGTGCTGGCGGAGGCACGGTCGGTGCGTGCCTACAGGGATGAGGTGGATGCTCTGAGGGAGAAGGCAGCCAAGGTGGACAGACTGGACACAGAGCTGTCACGCTGCAAGGAGAGGCTACACGACGTCCACTTTTACAAGACACGAGTCGAGGAGCTGAGAGAGGACAACGTGACTCTGATTGATACCAAAGCCATGCTGGAAGAGCAGCTGGGGGCAGCCAGGGGGCGCTGTGACAAACTACATGAGTTGGAGAAGGAGAACCTGCAGCTGCGCTCCAAACTCCATGACATGGAGATGGACCGGGTCACAGATAAGAAGCGCCTGGAGGAGTTGATAGAGGAGAACATGCTGCTGGAGATCTCTCAGAAACAGAGCATGAACGAGTCTACCCACCTTGGCTGGGAGCTGGAGCAGCTGGCTAAGAACAATGACAACAGCGACACGCGCAAGTCGTTTGTGTGTGAGCTGAATGAGTCTACGTCGAGCCGTCTGCTGAAGCTGGAGAAAGAGAACCAGGTTCTGCAGACCACCATACAGGAGCTCAGAGAGGCTTCCCTAAGTCTAGAGGAGGGCCAGCTACATACCTTGGAGCTGGAGAGTGAGAACCAGGGCCTCTGCAAGAAGCTGGAGCATCTGCAGACCCTGCTGGACCAGGAGAAGCAGACAACCCAGGACATGGAGGGTCTTGGGGAAGATCTACTCAAAGACAAGCAGAAACTGAATAAGGCTCTGGAGACACTGCAGGAAGACaaggacagacagATCTCTGAGCTGGCGCAGGAGAAGGAGCACCTGAGCCAGGCGGTGAGCTCCCTGCGTCAGCGTGCCCAAGCCAACAGTGAGGCTCGGGTCAGGGAGGTGGAGACGGAGAACCGCGTCCTCCACCAGACCATCACGGACACAGGGTCCAAGCTGGCCCGGCTAGAGGCCCAGGGCAAGCAGTCGACTAAGGAgctggagacactgagggagaggggggagcgCTGTGAGGAGCTGGAGAGGGAGACTGCACATCTTGGGAGGAGCAAAGAGCAGCTtcagagggagGTGGCGTCGCTGATGATTACGTGTGACCGGGCCGAggccctggagagagacaacGCCAGCCTGGAGCAGGACAACCGGAGGCTGAAGAAGCAGGCGGACATGGCCCAGAACACCAGCCTGCGCCTGACTACTCTGGAGAAGGACCACAGCCTCCTGGACCAGGAGAACCTGGAGCTCCGCCGCACTGTGGAATCTCTTCGGCCAGCCGCAGTGCGCCTGGCCCAGCTCCAGCAAGAGAATGAGGAGCTAGAGCGGGACAGGGAGGAGCTGGCCCGGTCTGTGGAGGAGCTGAGGTCCCAGGGGAAAAGGGCAGAGAGGCTGGAGATAAGCATCAGCAGCCTGGGTCAGGAGAACCAGAGGCTCCAGCAGAGCCTGGACAACAGCTCCACAAAGATCCAGGGGCTGGAAAGGGAGCTAAGGCAGGCCGAGGCCGAGACAGGGGGGCTAAGAAGGGAGCTGGAGGAGGTGTGCCTGGTGGCAAAACGCCTGGAGGcagtggagaaggagaagagggggctGGAGCAAGAACTGGGCCAGTCAGAGAAGGAGAGTaagcagctggagaaggaggcACGGAGGCTGTGGCAGCAGCTGGAGGTGAAGGAGAGGGTTCTGGAGGAGAGTGCTCTGAGGCTGGCCTCCCTGGAGAAGGAGGGCATCACCAAGGAGAAAGAGCTGGAGAGGTTAAAGGAGGCGACTGGGAAGGTCaaagagctagagagggagaacAAGGAGCTGCAGAAACAGGCCACGATTGACAAGAGGACCCTGGCCACACTCCGAGAGgACCTGGTGAATGAGAAGCTAAAGGTGCAGCAGCAATGGAACGAGTTGGAGACACTGAGCCATGAGCTGGAGAAGATCGGCCTGAACAGAGAGAAACTACTGCAGGAGGAGCACAGCTGTGAAGACAATAAGTTCAAGATCTTGGAGAGTAAGATCGAGTCAACACTGAAGAAGACTCTGGAGATCCGCGAGGAGAAGATTCAGGGGCTGGAGTCCCGACTGGAGGAGTCTAGTAGTCTCAACCAGCAGCTACGCACTGAACTCAGCACCGTGAAGAAGACTCTAGAGGCTCTGCGACAgaggcaggaggaagaggaggcccaCTCCCAGACCCAGAGCTCCACACTGCAGGCTGTAGGTCAGGGCCAGGGCAGGCCTGGCCAGAAGGAGAAGTGGGAGACGGAGACTAGAGAGGCCACCGCGGAGCTCCTCAAACTAAAGGACCGCCTCATCGACATAGAGAAGAATAATGCAACCCTGCAGACAGAGAAGCACCTTCTGAAGGAGCAGCTGAGACAGCTGGACACCCAGAACAGTCAGCTGAATGCCCAGACTGTGGCCGTACAGAGGCAGTCTGCTGTACTGCAAGAGCACAACACGGCCctgcacacacagacagccaaGCTACAGGTGGAGAACTCCACCCTCAACTCCCAGAGTGCATCTCTCATGGCCCAGAATGCTGTGCTGCAGGGCCAGGTGGGGGCGCTGGAGAGTGAGTCAGAGGCGTGGCAGCGGCAGCGGGAGGAGGCGCGGGTGGGTAGGGAGAGCGTGCTGCAGGATCACGAGCGCCTGCTGAGTGTGCATGAGAGACAGGCAGCGGAGTACGAGCAGCTCATCGCCCAACACGCCACCCTGAAGGGCAACCAGAGAGCTCTGGAGCAAGAGCACCGCACACTGGAGAACAAGTACATGGTGCTCCTGAAGCAGAAAGATGCCATGGAGGCGCTGGAGTCCACCCtccagaaggagagggagagtctaGGAGAGGAGATCCACAAAAACGCCCTGATCCTGGGTGAGAACCAGAGCCTGAGGGGGGAAGTGGACAGGTTGACCCAGACACATACCCAGCTACGTGCGGAGTATGATGTGCTGCAGGTGCAGACCAAGGAGCTGAAGACTAGTCTGAATGGAGCTCAGCTGGAGGTGAACCGCTGGCAGGCCAGATACGACTCAATGAAGGAGCAACACCAGGGCCTGGACATCTCCATGACCAAGCTGGACAACCACTGTGAGTTGCTGACGCGTCTGAAGGGGAACCTGGAGGAGGAGAACCACCACCTGCTGAGTCAGATCCAGATGTTGAGCCAACAGAACCAGACCCTTCTGGAGAGAACCATGGAGAGCAAGGAGCTCTACCACGAAGAGCAAAAACAGTACATTGACAAGTTGAACTCACTCCGGAGGCAGAAAGAGAAGCTGGAGGAGAAGATCATGGATCAGTACAAGTTTTATGATCCAACCCCTAAAaaGAAGAACCACTGGGCCGGGGCGAAGGCCTTGGCCAAACTCATCAAGCCCAAGAACAGACAGGACAGCTCGAGGGAGAGGGTGCGGAGCGCCCCAGACATCCCCCTGCCAGAACCTCCCACCCTGGACTTCCCTGACATACctccccccctgcctccccctcctctacccccccgcCAGTCCCGCCTCAGCCTGGACTCTGTGGGGAACCACTCTCAGGAGGAGAACCACCACGGACAGGGGCACTCCCCTACCCTCACCCCCACCCACTCCAGCAGAGCACTAAACGACAGTGGAGTGTCCCGAGGCAGGGAGCTGTACCGAATTCCAGGGGGTAGCAGTGAGAGTGTCAATGGCACAGAAGAGCTCTACGCCAGAAGAAGAGGTGTGGAGCTAGGGGGTGCTGCTCACTCCACCCTCGCCAACCACACCTCCACTTCAGGCCTGACACCCAACTCAAGCTCCAGGCCTGGACGCAGACCCAAAGGTTTTATCCACGAGGACGACCCTCGGGTTCACTCCCCCGACGCCTTGTTTGGGAGCAGTATCCATGGAAACGCAGGTTATCGACCAGGCTCTGCTGAGCTCAGCCGCAACACCTCCAGCAGCAACTCCCCTGTTAACTTCAAAGATTCCCTGCAGCGCCTGCAGGGCCGTTCTGCCAGCCTGTCCAGTGATGACGTAGTGGGCGTTAGTCACGACGTCtcccactccctgtctctcccccggAGCTCCACGGTTCCCTAcgacacccatacacacaccccGACCAAGAGGAGTGCACCCCGGCCGGGCCGCCACCGAACCTCCTCCCCTGGCAGCGATATGGTCACCTTGGAAGAGTTCCTGGAGGAGAGCAACACCCTCTCACCACCGACTGTGCAGACAGGCAGTCAGGAGGACCTGATGGAGGACTACTTCAGCAGAacaggagagcgggagagatCCACCTCCGGCCGGCCTGCTCATAGAGATGGAGCCAAGACTCCAACCAGCTATGTCACGCCCACCgtgaagagagacacagaccTCCAACGGGCCGGCGAGGTGCCAGGCAGGAACTCCAAACCAGGACAGAGCGTCAGGCCCATCGTCCGGCTCCCTGAGGGatccacctccacaccccagtccCAGACCCTACCCAACCGGGCCAGCAACGGGTTAGGGACAGGGGGGCGGCCCTCACCCCTGGGACCTCCTGCACCCCGTGGAAGTGGTCTGGGCAGCAGCAGTCTGTCTCGGACCTTCAGCCTGGCCTCTGCTGACCTGCTGCGCTCAAACGGTCCAGATAGCTACcggacagacagggaggcaggtGGCTCACCCAGCCAGAGTGGAGGTGGTGGAAGTGTGGACGGGGTGGTCAGGAGGCCTGGGGCTGGAGCCATGGCCAGGGAGCGCCCCCACTCTGCCAGGCTAGCAGGACCCTCGGACATAGACCCCCGCAGGCTGCCTCTGGCTCCACCCAAAGAGGAACCACTCAGCCTGACCCTTCCCCAGCACCACTCCTCCTCCCTATCCTTGCAGCCCGAGCGATACGGAGGAAGAACAACACCAGGCTCCACCCCCAGGAACAACGGACCCAGCACCGGACAACAACAGGGACGACCCAACCCCCAGCAGAATCAGAAGAACCATCGTGGGGAGGTTGCCATGGTGACGCCAGTCAGGGCAGTGCCGGCTCTGAGACTGGAGGAGGCACAGGAGGAAGAGGTGCAGCTACAGGCGGACTCCCCGTTACTGAAGAAAccggaggtgggaggaggaggagggctgagCTGTGGCACAGAGGAGCCCCCCACGAGCACCCCTGCCTCCCCAGACCCCAATAACGACCCCCAGACTGTGTGGTATGAATATGGCTGTGTCTAGGAGCCGTTAGTGTAGTTACAGACCACAGCCTCAGTACTGTACAAACACTGTTCTTCCTGCTAAACCACAGGATGTCTGGCCTGGTCTTGTCTGGCACTCCTAGGCTGGTCCTTACTGTACTGGATATATCCTTTATGATTCGGACTGTTTGAAACTTCCTAACTGTAATCTTTAATGGTGAAACAGccaacaacaaagaagttactgcacACAACGAACACTGTTTTtcccctcagacatcattacgCGCACGACAGGAGAGCAAAACATGTactgcttgtttgtttttttaccatGCTGCGCAACGTCTTCTCAGCTCGGCATCAAAAACAATAACAGCGGTGGTGTAGCGGCCAGTGGCGCTGTTTCCCCCTACTGCGGATTCTATCTTTAAAGCTTCATAAAGGAGATGCTGGCACAGAGACCACCTCAATCAACACACAACAGGGGCCTGTACCCAGCTGGCAAAAGATATggttgatttgatttgcatgACCAAGGGACCACCAGTACCGCAGTTACATTAGCACATGAATGCTTTGAGGAAGACAAAAGGCACTAGGGAGCGACGAATGTATTTTAATATTTTTCTATTGGACACCACTGATTCCCCTCAGCTCTCtgtgcactgtatatacaacctTGGCCTTGTCCAAGAAGTTATATTCTGAATctgaaaaacaaacattttgggGAAGGAGAAAAGAACCACTCCCAGAGTAATTGCATGGTAATTTCTGTCCTCCATCTTTAGGAGCTTAAGGACAGACAGTGTTTGATTGTCTCAACACAGCCTCGGAGTGACACATTACTGGAAAAAGGTCTGCTCCAACTTCGAACATACTGTTTTCTGTTGTGGCCTGTGGGTGACCAAACTATGGGCTTTGTGAAACTGGCTTGTGGGGAGCATGTAATTCATCCCATATCTGTCCTTGTGCACGCGAGGCAGGACGAGaaagtagagggagagagcaccGCACTGACCAACTTCCGAAAAGAGAAAAAGCAGGGATTTTGTAGCAAGAGAGGGGCTACTTTTTAAATGAAAGGAGTGAAGGAGGATTGAGAAAGTGATGGAGATGGAGCGAAagtgagttttt

Function

NR:

description
protein Daple-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021574068.2 True 7734 mRNA 0.56 32 36240780 36323039

Neighbor

gene id symbol gene type direction distance location
LOC110497741 LOC106601320 coding downstream 3546 36225227 ~ 36237234 (-)
zgc:174356 LOC106601284 coding downstream 305391 35895612 ~ 35935389 (-)
LOC110497733 LOC106601249 coding downstream 537062 35689469 ~ 35703718 (-)
LOC110497737 LOC103380713 coding downstream 578935 35647704 ~ 35661845 (-)
ralgapa1 ralgapa1 coding downstream 702018 35460212 ~ 35538762 (-)
il17a/f1 LOC106600843 coding upstream 45747 36368786 ~ 36370367 (-)
LOC110497747 LOC106601376 coding upstream 92687 36415726 ~ 36419930 (-)
LOC110498571 NA coding upstream 267894 36590933 ~ 36593040 (-)
LOC110497749 LOC106601399 coding upstream 318548 36641587 ~ 36674532 (-)
LOC110497751 LOC106601420 coding upstream 396882 36719921 ~ 36739629 (-)
G1619002 NA non-coding downstream 107749 36132802 ~ 36133031 (-)
G1619000 NA non-coding downstream 110098 36130460 ~ 36130682 (-)
G1618999 NA non-coding downstream 110885 36129226 ~ 36129895 (-)
G1618996 NA non-coding downstream 113669 36126805 ~ 36127111 (-)
G1618985 NA non-coding downstream 117612 36122916 ~ 36123168 (-)
G1619115 NA non-coding upstream 24535 36347574 ~ 36350149 (-)
G1619147 NA non-coding upstream 106232 36429271 ~ 36429510 (-)
G1619155 NA non-coding upstream 116064 36439103 ~ 36439305 (-)
G1619512 NA non-coding upstream 198054 36521093 ~ 36521347 (-)
LOC110498336 LOC106611177 other downstream 843997 35392412 ~ 35396783 (-)
G1615810 hectd1 other downstream 2761344 33478593 ~ 33479436 (-)
G1615793 NA other downstream 2827563 33412219 ~ 33413217 (-)
LOC110497688 npas3 other downstream 3465076 32770921 ~ 33161896 (-)
G1615357 LOC106602003 other downstream 3583011 32650926 ~ 32657769 (-)
G1619119 NA other upstream 78515 36401554 ~ 36405336 (-)
LOC110497753 spred1 other upstream 331484 36654523 ~ 36840800 (-)
G1622757 LOC106600509 other upstream 2633985 38957024 ~ 38958974 (-)
si:dkey-229e3.2 LOC106599591 other upstream 3042218 39365257 ~ 39370631 (-)
G1623037 LOC106586451 other upstream 3073029 39396068 ~ 39411784 (-)

Expression


Co-expression Network