LOC110497751 (LOC106601420)


Basic Information

Item Value
gene id LOC110497751
gene name LOC106601420
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 36719921 ~ 36739629 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021574090.2
TATAAACACTAAACAGAACAGGCTGTTGTGGTGGGCATGGAAACAATGGAAGTCTACAAAGCACTCTGTTTGATGAATCTACTAGTTGCATTCCTTTCAAAAGGGTCTCACTCTCAGTTGGATGTATGCGGAACCCCTCTCAACACTAGGATTGTGGGGGGTCAGGATGCTCTTGCAGGGAGTTGGCCATGGCAGGCCAGTCTGCACAGATCTGGCAGGCATTTTTGTGGGGGATCCCTCATCAACAAAGAGTGGGTGCTGACTGCTGCTCACTGCTTCTCCAGCTCTCCTCCCCTGTGACTTTTACCAACTACATCCGGCCAGTCTGCCTAGCTGCACCAGGCAGCTCCTTTCATGCCGGCACTACTAGCTGGGTCACTGGCTGGGGCACCATCCGCAGTGGAGTGTCCCTGCCCTCACCAAAGACCCTACAGGAGGTGGATGTGCCAGTAGTGGGAAACAGGCAGTGTAACTTTAACTATGGAGTAGGTTCAATCACAGACAACATGATCTGTGCTGGTCTAGCAGCAGGAGGAAAGGATTCCTGTCAGGGGGACTCCGGAGGTCCGATGGTAACCAATCAGGGTACTCGCTGGATCCAGTCTGGTGTTGTGAGTTTCGGCAAAGGCTGTGCCCTGGCAAAATTCCCAGGAGTGTACACCAGAGTGTCCCAGTACCAGACCTGGATCAACAGCCAGATCAGCAGTGACCAGCCTGGCTTTGTCACCTTCTCCTCCAGTGGGACTGACTCTGACCTCAGTGTCTTCTGTACTGGTCTTTCAGCCCCtacaaccaccactaccactacaaccaccactacAACTGCCCCTACAACTGCCCCTACAACCGCCCCTACCACTGCCCCTACAACCGCCACTCCAACTGCCCCTACCACTGCCCCTACTGCCCCtacaaccaccactaccaccacaactgCCCCTACAACCgcatctgTGGTGTGTGGCAGCGCTAGCTCCTCTTTGAACTCCCATGTTGGTGGCGGAAGCTCGTTGGCGACAGCAGGTTTGTGGCCCTGGATAGCCAGCATACAGACTAACGGAGCGCACGTCTGTGGGGGCACTTTAGTGGCGGTAGACTCTGTCATGAGTGATGCCAGCTGCTTTTCTAGCCAGGCCAACGCCTCTGAGTGGACCGTGATTCTGGGTCGTCTGAAGCAGAGCGGCTCCAATCCCCACGAGGTAACCCAGAACGTCATCAACATCACCATGAGCAATGTGACAGGCAAAAACGTGGCCATCCTCCGACTGGCCAGCCAACCCACATTGTCTGACTACATCCAGCCTATCTGTGTGGACAAGGGAACCAGAACCTTCAGCACAGGGACTCCGTGTTGGGTAGCTGGCTGGGCAACAGGTCAGGGTGGCGCTGAGGAAGTTCTGCAGGAGTTCCAGACCTCTGTGGTGGAATGTGTGAATGTTTCGTCTACGGACAACATTTGCACCGGAGCTGTGACACTACTGCAGGGTAATGCCGGTGGTCCTTTGATGTGTAAGCATGGCAACTCATGGTTCCAGACTGCTGTGTTGACTGTCGACAGCAACACCACTAGCAATAACAGCACCAACAAAGCACGTTGGAGCAGGGATCCCCACACCTCCCCTATCCAAGTCTTCACCAAAACCTCCCACTTCCAAAACTTCCTGGCTGCCAATTTGGGAACCTTCCTATCCCCTGCCACTTCAGCTGGTGGCAGCAGTGGAGCTTCCCTggcccactcctctctcctcctcttctccctctcctctgtcttacTGTTGGGTTGGTACTAGGAAACTCCACAGCTACCATTGACAAGCCCTCTCTAACTTCCAACCAAAAGTATATTTTTTTCGAGGAATTAATCAATTTTTGTCAGTGACTGGTAGTGTGTCAAAGCCAGGATTCTAGTTTTGAACTCAGGGAGCCTTCATTTCCAGTCATTTGAATGATGAATGTTTCCAACTTCCTTTGTCTTTTTACTATTTTTGCTGTCAATGTTTTTGTATCAGTAGCATTTTCTGGATACTATTTTGTTATGACACTTACAGCATTGCTGTTTGAGACGCAATATGCAGGATTTTCTGTTAACTGTCTGGGTGTGTAACATGACAATATCCAGATACCATGTAAAACAATGGAACATAATAATGTTGCCAGAGTTGACCCTTTCTAGCCTGAGCGAAATGTTCCATTTCTTGCAGGATCAAGACCTCTGCATATATTAATGGGTATACTTTGCTGGTGTAAAACCATGATAGGCATTTTGAAAGCGGAGAAACAGCCCCTTGACTGATTGCTATTGTATGTCACATTTCAAGAAATAAACTGAAAATATGCTTCTTATACAAAAATCGATGCTTTCTCCCAAACAACTGCCATTCCCACAACTTTTTAATGAAGATGAGGAAAGAGAGCATATTGTCTTTGTTTGATAAGTGTTGAACATTTGAAATCAGAATAGAAATACCTTTTACTGATGTTATTTTTCAAAAATTCTATGGAATATTCTTTGATCAGACACTATCtggttagtaaataaataaacatctgcaTCAAAACAAATGACAACTAGCATTTAGTCTTACATAAGGAAATAAGTCATATAATATTAAAACAATTATTCTTTCAATGAAGTTATGGGGAATAGATTGTCTGTCATAGCCATAACATTAATCTCAGTGATTTTTACCATAAAAATTGATCTGGAATTACAGTGCCTATAGAAAGACTACGCTCCCttaactttttcaaaatgttgttgtgagaaaataagtatatattaaaaatacaaaactgaaatatca
>XM_021574085.2
TACAAAAGTATAAACACTAAACAGAACAGGCTGTTGTGGTGGGCATGGAAACAATGGAAGTCTACAAAGCACTCTGTTTGATGAATCTACTAGTTGCATTCCTTTCAAAAGGGTCTCACTCTCAGTTGGATGTATGCGGAACCCCTCTCAACACTAGGATTGTGGGGGGTCAGGATGCTCTTGCAGGGAGTTGGCCATGGCAGGCCAGTCTGCACAGATCTGGCAGGCATTTTTGTGGGGGATCCCTCATCAACAAAGAGTGGGTGCTGACTGCTGCTCACTGCTTCTCCAGCCCCAGTACATCAAATTTGGTGGTCTACGTTGGTCGTCAGAACCAGAAGGGCTCTAACCCCAACGAGGTGAACCGCGGGGTCACTCAGATCATGTCCCACCCCAACTACACCAGAAGTACTAATGACAACGACATGTGTCTTCTCAAGCTCTCCTCCCCTGTGACTTTTACCAACTACATCCGGCCAGTCTGCCTAGCTGCACCAGGCAGCTCCTTTCATGCCGGCACTACTAGCTGGGTCACTGGCTGGGGCACCATCCGCAGTGGAGTGTCCCTGCCCTCACCAAAGACCCTACAGGAGGTGGATGTGCCAGTAGTGGGAAACAGGCAGTGTAACTTTAACTATGGAGTAGGTTCAATCACAGACAACATGATCTGTGCTGGTCTAGCAGCAGGAGGAAAGGATTCCTGTCAGGGGGACTCCGGAGGTCCGATGGTAACCAATCAGGGTACTCGCTGGATCCAGTCTGGTGTTGTGAGTTTCGGCAAAGGCTGTGCCCTGGCAAAATTCCCAGGAGTGTACACCAGAGTGTCCCAGTACCAGACCTGGATCAACAGCCAGATCAGCAGTGACCAGCCTGGCTTTGTCACCTTCTCCTCCAGTGGGACTGACTCTGACCTCAGTGTCTTCTGTACTGGTCTTTCAGCCCCtacaaccaccactaccactacaaccaccactacAACTGCCCCTACAACTGCCCCTACAACCGCCCCTACCACTGCCCCTACAACCGCCACTCCAACTGCCCCTACCACTGCCCCTACTGCCCCtacaaccaccactaccaccacaactgCCCCTACAACCgcatctgTGGTGTGTGGCAGCGCTAGCTCCTCTTTGAACTCCCATGTTGGTGGCGGAAGCTCGTTGGCGACAGCAGGTTTGTGGCCCTGGATAGCCAGCATACAGACTAACGGAGCGCACGTCTGTGGGGGCACTTTAGTGGCGGTAGACTCTGTCATGAGTGATGCCAGCTGCTTTTCTAGCCAGGCCAACGCCTCTGAGTGGACCGTGATTCTGGGTCGTCTGAAGCAGAGCGGCTCCAATCCCCACGAGGTAACCCAGAACGTCATCAACATCACCATGAGCAATGTGACAGGCAAAAACGTGGCCATCCTCCGACTGGCCAGCCAACCCACATTGTCTGACTACATCCAGCCTATCTGTGTGGACAAGGGAACCAGAACCTTCAGCACAGGGACTCCGTGTTGGGTAGCTGGCTGGGCAACAGGTCAGGGTGGCGCTGAGGAAGTTCTGCAGGAGTTCCAGACCTCTGTGGTGGAATGTGTGAATGTTTCGTCTACGGACAACATTTGCACCGGAGCTGTGACACTACTGCAGGGTAATGCCGGTGGTCCTTTGATGTGTAAGCATGGCAACTCATGGTTCCAGACTGCTGTGTTGACTGTCGACAGCAACACCACTAGCAATAACAGCACCAACAAAGCACGTTGGAGCAGGGATCCCCACACCTCCCCTATCCAAGTCTTCACCAAAACCTCCCACTTCCAAAACTTCCTGGCTGCCAATTTGGGAACCTTCCTATCCCCTGCCACTTCAGCTGGTGGCAGCAGTGGAGCTTCCCTggcccactcctctctcctcctcttctccctctcctctgtcttacTGTTGGGTTGGTACTAGGAAACTCCACAGCTACCATTGACAAGCCCTCTCTAACTTCCAACCAAAAGTATATTTTTTTCGAGGAATTAATCAATTTTTGTCAGTGACTGGTAGTGTGTCAAAGCCAGGATTCTAGTTTTGAACTCAGGGAGCCTTCATTTCCAGTCATTTGAATGATGAATGTTTCCAACTTCCTTTGTCTTTTTACTATTTTTGCTGTCAATGTTTTTGTATCAGTAGCATTTTCTGGATACTATTTTGTTATGACACTTACAGCATTGCTGTTTGAGACGCAATATGCAGGATTTTCTGTTAACTGTCTGGGTGTGTAACATGACAATATCCAGATACCATGTAAAACAATGGAACATAATAATGTTGCCAGAGTTGACCCTTTCTAGCCTGAGCGAAATGTTCCATTTCTTGCAGGATCAAGACCTCTGCATATATTAATGGGTATACTTTGCTGGTGTAAAACCATGATAGGCATTTTGAAAGCGGAGAAACAGCCCCTTGACTGATTGCTATTGTATGTCACATTTCAAGAAATAAACTGAAAATATGCTTCTTATACAAAAATCGATGCTTTCTCCCAAACAACTGCCATTCCCACAACTTTTTAATGAAGATGAGGAAAGAGAGCATATTGTCTTTGTTTGATAAGTGTTGAACATTTGAAATCAGAATAGAAATACCTTTTACTGATGTTATTTTTCAAAAATTCTATGGAATATTCTTTGATCAGACACTATCtggttagtaaataaataaacatctgcaTCAAAACAAATGACAACTAGCATTTAGTCTTACATAAGGAAATAAGTCATATAATATTAAAACAATTATTCTTTCAATGAAGTTATGGGGAATAGATTGTCTGTCATAGCCATAACATTAATCTCAGTGATTTTTACCATAAAAATTGATCTGGAATTACAGTGCCTATAGAAAGACTACGCTCCCttaactttttcaaaatgttgttgtgagaaaataagtatatattaaaaatacaaaactgaaatatca
>XM_021574087.2
TACAAAAGTATAAACACTAAACAGAACAGGCTGTTGTGGTGGGCATGGAAACAATGGAAGTCTACAAAGCACTCTGTTTGATGAATCTACTAGTTGCATTCCTTTCAAAAGGGTCTCACTCTCAGTTGGATGTATGCGGAACCCCTCTCAACACTAGGATTGTGGGGGGTCAGGATGCTCTTGCAGGGAGTTGGCCATGGCAGGCCAGTCTGCACAGATCTGGCAGGCATTTTTGTGGGGGATCCCTCATCAACAAAGAGTGGGTGCTGACTGCTGCTCACTGCTTCTCCAGCCCCAGTACATCAAATTTGGTGGTCTACGTTGGTCGTCAGAACCAGAAGGGCTCTAACCCCAACGAGGTGAACCGCGGGGTCACTCAGATCATGTCCCACCCCAACTACACCAGAAGTACTAATGACAACGACATGTGTCTTCTCAAGCTCTCCTCCCCTGTGACTTTTACCAACTACATCCGGCCAGTCTGCCTAGCTGCACCAGGCAGCTCCTTTCATGCCGGCACTACTAGCTGGGTCACTGGCTGGGGCACCATCCGCAGTGGAGTGTCCCTGCCCTCACCAAAGACCCTACAGGAGGTGGATGTGCCAGTAGTGGGAAACAGGCAGTGTAACTTTAACTATGGAGTAGGTTCAATCACAGACAACATGATCTGTGCTGGTCTAGCAGCAGGAGGAAAGGATTCCTGTCAGGGGGACTCCGGAGGTCCGATGGTAACCAATCAGGGTACTCGCTGGATCCAGTCTGGTGTTGTGAGTTTCGGCAAAGGCTGTGCCCTGGCAAAATTCCCAGGAGTGTACACCAGAGTGTCCCAGTACCAGACCTGGATCAACAGCCAGATCAGCAGTGACCAGCCTGGCTTTGTCACCTTCTCCTCCAGTGGGACTGACTCTGACCTCAGTGTCTTCTctgTGGTGTGTGGCAGCGCTAGCTCCTCTTTGAACTCCCATGTTGGTGGCGGAAGCTCGTTGGCGACAGCAGGTTTGTGGCCCTGGATAGCCAGCATACAGACTAACGGAGCGCACGTCTGTGGGGGCACTTTAGTGGCGGTAGACTCTGTCATGAGTGATGCCAGCTGCTTTTCTAGCCAGGCCAACGCCTCTGAGTGGACCGTGATTCTGGGTCGTCTGAAGCAGAGCGGCTCCAATCCCCACGAGGTAACCCAGAACGTCATCAACATCACCATGAGCAATGTGACAGGCAAAAACGTGGCCATCCTCCGACTGGCCAGCCAACCCACATTGTCTGACTACATCCAGCCTATCTGTGTGGACAAGGGAACCAGAACCTTCAGCACAGGGACTCCGTGTTGGGTAGCTGGCTGGGCAACAGGTCAGGGTGGCGCTGAGGAAGTTCTGCAGGAGTTCCAGACCTCTGTGGTGGAATGTGTGAATGTTTCGTCTACGGACAACATTTGCACCGGAGCTGTGACACTACTGCAGGGTAATGCCGGTGGTCCTTTGATGTGTAAGCATGGCAACTCATGGTTCCAGACTGCTGTGTTGACTGTCGACAGCAACACCACTAGCAATAACAGCACCAACAAAGCACGTTGGAGCAGGGATCCCCACACCTCCCCTATCCAAGTCTTCACCAAAACCTCCCACTTCCAAAACTTCCTGGCTGCCAATTTGGGAACCTTCCTATCCCCTGCCACTTCAGCTGGTGGCAGCAGTGGAGCTTCCCTggcccactcctctctcctcctcttctccctctcctctgtcttacTGTTGGGTTGGTACTAGGAAACTCCACAGCTACCATTGACAAGCCCTCTCTAACTTCCAACCAAAAGTATATTTTTTTCGAGGAATTAATCAATTTTTGTCAGTGACTGGTAGTGTGTCAAAGCCAGGATTCTAGTTTTGAACTCAGGGAGCCTTCATTTCCAGTCATTTGAATGATGAATGTTTCCAACTTCCTTTGTCTTTTTACTATTTTTGCTGTCAATGTTTTTGTATCAGTAGCATTTTCTGGATACTATTTTGTTATGACACTTACAGCATTGCTGTTTGAGACGCAATATGCAGGATTTTCTGTTAACTGTCTGGGTGTGTAACATGACAATATCCAGATACCATGTAAAACAATGGAACATAATAATGTTGCCAGAGTTGACCCTTTCTAGCCTGAGCGAAATGTTCCATTTCTTGCAGGATCAAGACCTCTGCATATATTAATGGGTATACTTTGCTGGTGTAAAACCATGATAGGCATTTTGAAAGCGGAGAAACAGCCCCTTGACTGATTGCTATTGTATGTCACATTTCAAGAAATAAACTGAAAATATGCTTCTTATACAAAAATCGATGCTTTCTCCCAAACAACTGCCATTCCCACAACTTTTTAATGAAGATGAGGAAAGAGAGCATATTGTCTTTGTTTGATAAGTGTTGAACATTTGAAATCAGAATAGAAATACCTTTTACTGATGTTATTTTTCAAAAATTCTATGGAATATTCTTTGATCAGACACTATCtggttagtaaataaataaacatctgcaTCAAAACAAATGACAACTAGCATTTAGTCTTACATAAGGAAATAAGTCATATAATATTAAAACAATTATTCTTTCAATGAAGTTATGGGGAATAGATTGTCTGTCATAGCCATAACATTAATCTCAGTGATTTTTACCATAAAAATTGATCTGGAATTACAGTGCCTATAGAAAGACTACGCTCCCttaactttttcaaaatgttgttgtgagaaaataagtatatattaaaaatacaaaactgaaatatca

Function

NR:

description
transmembrane protease serine 9-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021574090.2 False 2804 mRNA 0.47 10 36719921 36739621
XM_021574085.2 False 2960 mRNA 0.47 10 36719921 36739629
XM_021574087.2 True 2777 mRNA 0.46 10 36719921 36739629

Neighbor

gene id symbol gene type direction distance location
LOC110497749 LOC106601399 coding downstream 45389 36641587 ~ 36674532 (-)
LOC110498571 NA coding downstream 126881 36590933 ~ 36593040 (-)
LOC110497747 LOC106601376 coding downstream 299991 36415726 ~ 36419930 (-)
il17a/f1 LOC106600843 coding downstream 349554 36368786 ~ 36370367 (-)
ccdc88c LOC106601343 coding downstream 396882 36240780 ~ 36323039 (-)
fam98b fam98b coding upstream 9224 36748853 ~ 36757484 (-)
LOC110497753 spred1 coding upstream 25076 36654523 ~ 36840800 (-)
LOC118941471 NA coding upstream 289625 37029254 ~ 37036523 (-)
cdin1 cssa01h15orf41 coding upstream 427141 37166770 ~ 37243458 (-)
stxbp6 LOC106601569 coding upstream 921803 37661432 ~ 37821260 (-)
G1619632 NA non-coding downstream 35814 36678724 ~ 36684107 (-)
G1619518 NA non-coding downstream 189750 36529893 ~ 36530171 (-)
G1619516 NA non-coding downstream 193240 36526355 ~ 36526681 (-)
G1619512 NA non-coding downstream 198574 36521093 ~ 36521347 (-)
G1619895 NA non-coding upstream 267913 37007542 ~ 37008012 (-)
G1619905 NA non-coding upstream 276987 37016616 ~ 37016834 (-)
G1619916 NA non-coding upstream 281799 37021428 ~ 37021726 (-)
G1619996 NA non-coding upstream 283969 37023598 ~ 37023806 (-)
G1619119 NA other downstream 314585 36401554 ~ 36405336 (-)
LOC110498336 LOC106611177 other downstream 1323138 35392412 ~ 35396783 (-)
G1615810 hectd1 other downstream 3240485 33478593 ~ 33479436 (-)
G1615793 NA other downstream 3306704 33412219 ~ 33413217 (-)
LOC110497688 npas3 other downstream 3944217 32770921 ~ 33161896 (-)
G1622757 LOC106600509 other upstream 2217395 38957024 ~ 38958974 (-)
si:dkey-229e3.2 LOC106599591 other upstream 2625628 39365257 ~ 39370631 (-)
G1623037 LOC106586451 other upstream 2656439 39396068 ~ 39411784 (-)
G1623175 NA other upstream 2935810 39675439 ~ 39681529 (-)
LOC110497838 trmt5 other upstream 3727715 40467344 ~ 40547622 (-)

Expression


Co-expression Network