fam98b (fam98b)


Basic Information

Item Value
gene id fam98b
gene name fam98b
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 36748853 ~ 36757484 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021574091.2
tctatctatctctatgaagGGAACACACTGAGCGGAACAAAAGTAACCAACATGAATGTTCCACTACGGATTTAATTTCCGTTACTTCTGACTCTCGGGATGGTTTTAGCTAGCCGATGAATTAAGCTAATAATGTATGTTTGTGTCTCACAATGTCAATACACTCACGTTTATATCGGTTACATGTATAACTTTGAAGGAATCTGCTGATATTGTTGTCTGCCACAATGGAACGTGATATTTTAGATGTTCTGGAACAAATCGGGTATGACGGACCTCTGCAGGATGAGGAGACGCTTGTCAAAGCATGTGAAGGTGGACTGTCATCACCTGAGTATATCAACCTTTGCATGTGGTTTAAATCCCGTCTGACACCGTTATGTGACCTGGAAGAGAGCAGTACATCAGGTTATGGTGATACTGATGGCCTTCGGTTTGAGATGAGTGGTATGCTGAAGGAGTTGGAGTGCCCCTATCAAGGCCTTGTCTCCGGGATTCTACAGGGAGGGCTGCAGAATAAAGAAGACCATCTAAAGCTAGTATTGTTTTTAAGCTCAGAGGTACAAGCTGCACAGATTGTGAAGAGCCGACTTGTTGAGGACAAACAACACAAAGACCGAAATGATCTCCAGGCAATCTGTGAAACACTGAAGCTCCCACAGCCAAGAGGGCAGGAAGTAGTAGAGCTGTTCTCCGGGATAGAACAAAAGATAAACGCAGTGTTTCAAGAGCTTCCAAATGATCACATTGGAAAGCCTGTGCTGAAGAACAATCTCGACAGTGAACAGTGGGAAAGGCTGGAGCAGATCAACACGGTCCTGTCCTCACAGTATGAGTGTCGGCGGAGGCTGCTGATCAAACGTCTGGACGTCACTGTGCAGTCTTTCGGCTGGTCAGACAGAGCCAAGGAGAGAGTTGACTGTATGGCCAGGGCCTACCAGCCTAAGAGACACTCCCTGGCCCAGATGTCGTCTGTGGGCATGGCTCACCTGCTGGCAGCCAGGGAGGACATATGCAACGTGGTGAAGACCAGCAGTGGCTCAAGCAGAGAGAATACTGCCTGTGCCGTCAATAAGATCCTGATGGGGAGAGTGCCAGATCGCGGTGGTCGGCCCTCTGAGATAGATGCCCCCCTCCCTGAGATGCCAGCCTGGCAGAAGAGACAAGACGGAGGTTTTGGaggtcgtggtggtggtggtggtggtcgaGGAGGTGGTGGTAGTTGGGGAGGTGGTGGTAGTTGGGGAGGGGGTGGTAGTTGGGGAGGGGGTAAGAGTGGCTGGCgaggagggggtggagtaggAGGGGGCGCTGGTTGGGGTCACGGAGGAAAGAGGGGACGTTATCAATACTAACAATGATTTATTTTTGACTGAAAAGCCAAACAGTGTTAACTGAAACCTACTCATGTGTACCTGCTTCGCTAAGGGCAACACTAAGGCATTGTTTATTTGGAGTGATGTGGACTTGACTGAGATTTACAGAATGCTACTGTAGGAACACTCCCAAATATTTGTCACCCATTTTTGTGTTCATTTTCAATGCTGTTATGAACTGTGCTGCTGAGGATCGTTGTAGAAGCAACGAGTCAAACTCACTGGccatttttttttatagatttattttattattttggtaacactttacttgacacccagtgttaacacgttatgacacggtcataaccTGTTATAATACTGTGATGATGCATATATTTACACCGGTTGTGACATTGCGCTATTTTAttgctggttatgacacctacataagtgtcaaaacccacatttattcaaattaGATTTTCCCTGCCAAGAAATGTCCTCTTTGTTTTTGTTTAGTCATGtattttttaataaatgttttaaCTTGTAGGAAATAGTCTTTATGACAG
>TU1853277
CGCTGGTTGGGGTCACGGAGGAAAGAGGGGACGTTATCAATACTAACAATGATTTATTTTTGACTGAAAAGCCAAACAGTGTTAACTGAAACCTACTCATGTGTACCTGCTTCGCTAAGGGCAACACTAAGGCATTGTTTATTTGGAGTGATGTGGACTTGACTGAGATTTACAGAATGCTACTGTAGGAACACTCCCAAATATTTGTCACCCATTTTTGTGTTCATTTTCAATGCTGTTATGAACTGTGCTGCTGAGGATCGTTGTAGAAGCAACGAGTCAAACTCACTGGccatttttttttatagatttattttattattttggtaacactttacgacacggtcataaccTGTTATAATACTGTGATGATGCATATATTTACACCGGTTGTGACATTGCGCTATTTTAttgctggttatgacacctacataagtgtcaaaacccacatttattcaaattaGATTTTCCCTGCCAA

Function

symbol description
fam98b Predicted to be part of tRNA-splicing ligase complex. Orthologous to human FAM98B (family with sequence similarity 98 member B).

NR:

description
PREDICTED: protein FAM98B

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021574091.2 False 1891 mRNA 0.46 8 36748853 36757484
TU1853277 True 478 lncRNA 0.38 2 36748932 36749434

Neighbor

gene id symbol gene type direction distance location
LOC110497751 LOC106601420 coding downstream 9224 36719921 ~ 36739629 (-)
LOC110497749 LOC106601399 coding downstream 74321 36641587 ~ 36674532 (-)
LOC110498571 NA coding downstream 155813 36590933 ~ 36593040 (-)
LOC110497747 LOC106601376 coding downstream 328923 36415726 ~ 36419930 (-)
il17a/f1 LOC106600843 coding downstream 378486 36368786 ~ 36370367 (-)
LOC110497753 spred1 coding upstream 7221 36654523 ~ 36840800 (-)
LOC118941471 NA coding upstream 271770 37029254 ~ 37036523 (-)
cdin1 cssa01h15orf41 coding upstream 409286 37166770 ~ 37243458 (-)
stxbp6 LOC106601569 coding upstream 903948 37661432 ~ 37821260 (-)
LOC110497761 LOC106601584 coding upstream 1077177 37834661 ~ 37916564 (-)
G1619632 NA non-coding downstream 64746 36678724 ~ 36684107 (-)
G1619518 NA non-coding downstream 218682 36529893 ~ 36530171 (-)
G1619516 NA non-coding downstream 222172 36526355 ~ 36526681 (-)
G1619512 NA non-coding downstream 227506 36521093 ~ 36521347 (-)
G1619895 NA non-coding upstream 250058 37007542 ~ 37008012 (-)
G1619905 NA non-coding upstream 259132 37016616 ~ 37016834 (-)
G1619916 NA non-coding upstream 263944 37021428 ~ 37021726 (-)
G1619996 NA non-coding upstream 266114 37023598 ~ 37023806 (-)
G1620034 NA non-coding upstream 332573 37090057 ~ 37091448 (-)
G1619119 NA other downstream 343517 36401554 ~ 36405336 (-)
LOC110498336 LOC106611177 other downstream 1352070 35392412 ~ 35396783 (-)
G1615810 hectd1 other downstream 3269417 33478593 ~ 33479436 (-)
G1615793 NA other downstream 3335636 33412219 ~ 33413217 (-)
LOC110497688 npas3 other downstream 3973149 32770921 ~ 33161896 (-)
G1622757 LOC106600509 other upstream 2199540 38957024 ~ 38958974 (-)
si:dkey-229e3.2 LOC106599591 other upstream 2607773 39365257 ~ 39370631 (-)
G1623037 LOC106586451 other upstream 2638584 39396068 ~ 39411784 (-)
G1623175 NA other upstream 2917955 39675439 ~ 39681529 (-)
LOC110497838 trmt5 other upstream 3709860 40467344 ~ 40547622 (-)

Expression


Co-expression Network