LOC118941471


Basic Information

Item Value
gene id LOC118941471
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 37029254 ~ 37036523 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005037707.1
AAGATCATCAATCATGTCTTGAGTTTGAAGTTTAGAGGAGGAGCAACGCTCCGGCCATCGATTGCGCTGAGGCTATAGCCCTTTTTCCCTGAGCCCAAGCTTTTTTACGCACAAAACCGAAACAGGCCATCTATCCCTTTTAATATTTAGCTCCATCAATGATAATATACACTTTTGCGCAGATGGCATAATCGTTAAATTGATATGTTTTCACATAAATTGATACATTTATGGCTCGGTGACATTTTTGGTGGTTGTCGAAATTAACCATTCATAGGTTGAATGAGCTAGTGGGTTGGATTCAGCTGTAAGGTCAATATACTCCCAACAAACAAACGCGCCATACGGTTGCTTGGGATGACAATAGAAATAGCAattgaaaaatatttttaaaatgaaGGACTGTGACAACAATTATGTTTGTTGGCATAAGGGGGTGGGAAGCCCTACAAGAAAAAGTAGGACTGCAGGGTTGACGAACGGCTGTGTGGACAGTTCAACGTGCAATAGCCCGAGAAGGAACTACAGTGTTATGCGCAGAGCGGCATGCATCGTCTCCAAATACCTCTGACCGATGTTACATTCTGTGAACAGAACCAGGGGCTGGATGCGTGAGCTTTTGAAGACATGGGTTTTTGATATTAGCCCGACTGCTTATAATGATATCGTGCACTATGACCTGTACACTAACCCTAGCGTTTTTCTTCCGGACAAACATGGTTGAGGACTCATATGGATAAGGATACATATGAACAAAATCTGTGTTCAAGTAGAAGTGCATCTCCGTCAACATGCGGATCCGTCTCTTCTGCAGAAGATGGCATTAACAGGCGGTAAAATTTCATCTGGTGGTGTCAAATTGAGGTCAGTTTAGGGTTAAAGCTCTCGGTGTCCGTGTGGGACATGGCCAGCTGCGTTTGGATTCATTAGGGGACAGCGGATCCATTTCAAGGAAAACACTACTGAGACAATCACGAGGCTAAAGATCCACTCGGTGTCACATCCTAAAAGTGCACCTACTGTAAAAGAAGTAACCCCCAAACTCTCATTTCAAAACAGACACCAATATCTCCACTTTGCCATGGCTTCCTCTAAAGTAGCCTGGTAGCCTATATGTTGCTTAATATGGAGAAATATTTTCTTGATTTAATTCCTTCAAAAAGGTCACTGATACGAATCGGGGTTTAAATCCTCTTAGTGACCTTAAATACTTCTTTAGAAACAATCGCTGCTTAACCACAGGAACAAATAACATCGGCCTAATCTTGTTTGTTACTTTGTTCTGAGTTGGCCCGCCTTAGTATTTGAGATTATGCAAATAGGAAAAGCTAATGTTGGCTATAGAAAGCCCACAGATAAGAGTAGATCATAGACTTTTCTGAAGGGGACAGAAAACCAACACTTTCAGTAACCTTAAGGTCAATACAAAGATAATTCTGAATTGCGTTCAGGTATATTTAATGTATGGTTATTTTCTGAAGTTTTATAGTAGGCTTTTGTTCAATTGATGTTCAGACAATATCAATACTCGAATGTATATGTTAAAATCTAGTGATTAACTAACTATTCATTTATATAGGTTTGTTTATCTCAGTGTTTACATAATCTACAGTGAAGTTTTTTTTGTTTATACGTAGCCCTGTCAATGTTTTCCTCATGCAACACATACGGCATTACCTCACCAGGCTGAACTCTTTCTGACCCCACGTGAAATGTGACTAGGGTCCCAGAAAGTGGAATGAGCAACTCAAATACTTGTCAAAGTTTCGCGACTAACTGTAAATTCTTCAGTTCCTAAGCCGTATTTCCCCTCTATCGATTCTCAGATTCTGGTGTctgaggagggtgagagagagagggggtggggtggggagctACACAAAATGTAACTGTGGCGTTCTCCCTTGAAAATCCTTGGGATCTGTCTCAAAGACACTTAGCATGCCTAATGCGTAAAATATGCATTCCTCTAGCGACATCTGGCGGATTGAACAAACGCCAAACGTTGAATCGCGCCACTATTAATAATTAAGAAAAAAATAGGTAATCTTTAGGAAAAATCTAATTTGCGTGACAACGAAAAATATGCATTATAAATTGTGATCATAATGAATTCATTATTATGTGAACCATATATGTTTTTAAAGtgcaatttaatacattttacagtggaaaataggcctattttaaaaatattttgtgAGGAGAGAATGGATTCGAATGCCTATGTTATCAATATATCAAGCATAATTTGTATCCCAACAAACAATTTTTCTGAGTGAAATGTGAACCACGCAGGGTGCTGTGTAATATCAAAATAACGGTAACCAAAATTGTACTATTCGTCCAAAGATTAGGAGTAAATAGAAAAACCCAGTGAGGCAGTTGGGACCATCATTAGTTATGGTTTCTGGCTCAATTAATGTAAAGGAATTTACTGGTACGCAGGCCATTCATCCCTCAGTGCAATTACTCAAAGGTGTTTTTCTGTACATGAAAGCTCCTGCGAAATAGATAACTGGTGTAATTAAAAATGACACATGAAGATcggtatattatattatattattgttattattattatttgtctgTTATTATTACTGTTACAATCCGTTAATGTAGGCCTAATATTTGACAGTGCTGTTAATTCAAATTAATATCAAAATCACAAGCAATCAGCTTCAATCTAATTATAAATCATAAAAATATGTCTGATTTATTTGGACATAAACACGTTTGAATTAATGTCATATTTCGTGAAATAAAGATATTTTAGAATGTTTCAGCAATCTATTATTTATTCCCGGTCGATATCGTCCAAATAGATTAATGTTGCCTCACTCTATTATTTCCATGATGATATAATGGAATCCCCCAAGGTCAATAGAAATTTGGTTATGTTTAAAGGTCAATATAAATTtgttaatgttttgtcatactgTTTTGAATTCTCCGAAACGAATTTCAAAACCAACCACAATTTAGCATAAGGACACGGAGGTTTTCTTGCAAGAACATGCTATCATACTTTTTCCACAGTTGTCTGGATCATTACCGAGAGCTGAAGGAACATCCCTCCCGAAGTAGCACGGTTTCAGTCAGGCATGGCGAGATTAGTGACCGTGGCGAGGAATACGGTCATATGCATCAAATGCTGCTGAGGGGCTTGTATTGTGTGTTTATCGCGAAACACTGGGTGTGCAAGAGTAGCCTAACTATAGCCTAATCATTTGTCCTTGTCCCCTTCGTATCGAACTGTCTGAGCAAATCTAAAGAAATGTGTagctagactatcattttaccgAGCACTTTGGGGGGCAGGTATGCATTTTTATTTTGGGATTGAGGAGGTGGACACGTAAAGGGCCCATCTCGCCACATTACGACATGTAATAGAGAGAAGTTTAAGTGGAGCCCGAGAAACCGAGAAGTTAATAGCGCTGACCCTCTCGCGGTGCCTCTGTCGCTCATCATTTCTCAGACTTAAGGGGCTTAAAGAGGCAGTAGGCTATGGGCCCACCTTTATTACATATCAAACGCTCTCTTCCTTATCTACATAATAGGAAATACATGCATCGTTGCGTGTTATGCGGATTTGGAAATAGAAACATGTCCAATAAAGTCGCCCTCCCTCGCTGATCAAAGGGGAACATGGCTTTAGGCACCAAAGAAACTACCCCGTCCATTTAAACCGTTATTAAATTGTATTAATTCCCCTCTCCACTTTAAACTTAACATAAATTCCACCCTTGAGTTGTTTGTCCAGTACAGAGGGGAACAATTTAAGTGTTACATTTTCATGCTTGCATCATGCCCCGGAATTGAATTCAATTGGACAGAATAATCAAGAACGCAAATAGAATGTGTTCGGTTGCCCTCTGGACAATTGGAGATGTTTTTATGCCAGCCTTGATGGCAGACGTGTCAAGATTCATAATTAGGCATGCAGCTTTAAACCTTGGAATGTCTGTCAGACAAGCATCCAACTAAACAGATAACCATATCTTATCTTAACGCAAGCTTCTGACACTACACGAAAACCCCACTATGTATTTAAAGCTACTTGCAGACCTACAATTGTCTTCAAATGTGAGAATAGGCCATCCACGTAATGCACCCTTTGCGTAACAAGTAAATGGTTAGCAAAGTTTTCTTCTTGAAATTGTTCAATGCTATTTTATATATATGTTTGTTACGAGTTATAGCCTTCAGAAATGCTTTGTTGTCTTTTACTTGGTTGAAAAGTCTCTACTTTTAATATAATACAACACTAATAATTATCGTTTTTTTACAGGAACATGTTGTGAAAGTGacatactgtaggctactttCAGATGGCTCTGTCTTCATGTGCGTGGTAATATTTTTGAACTCGCCAAATTGTCTTATCAAAAGGCAGGTGAATATAGCCCCCCTATGTGTATATACATCTTAACAATTATGGACCTGTTATGGGACGTTTGCGTAGTGGTAAATAAGAACAGTTAAATAAGAGGGAGTTTTCATTTGGATAAATGTGTATGTTCAGCTGTCATATACTAGCCTATTGCCCTGCTACTTTGTGAAATTCGTGAGATGCTTTATGTTGTACAATAGGAGTGTAGTTGAACTGGAAAAGGGGCAGGAGGGGTTGTTTCCACCAGGGTGGGGAGTTCCAGTCATATAGGTTACAGCTGCATTACATTTAGTCTAGGTCGGCTAAAGTGAAAGACTGACTAGAGATGAAAGTCAAATGAGGAGAAACactagtctgttgttctatacaCACTATTGAATAGGCTTTCATAACAAATATGAACATTTAATACATTTAGTTAACAAAAAAAATCTGTAATAATGTTATTGGGTCATGTTAAATGCTAAATCTCCAGTTGAGCCACCTGTGCAATCATTGTTTACTCTCCCATGTGTGTAAACTTCAAGTGCCCTACATGCTGATAAATAAGTGTAGTATGGCAGGCTCAAAAGTCAAGTGTTGCTTGTAAAGATTCTGAGGTATCTTTGTGTATATTTGTATCTGTCCTTAAGGTTTTGATACAATTAATAAATGAGCGTGTTTTATAACTGATGATATGGTGTTGTGGTGTGATAACATTGAATCTATTCTTTATTGCATTCTAGATTGTTCTGTAGTTAATTTGAATTTCACATAAGCCGGGTGAAGACTTACAGATTCTACAGAGAAGCACGGCGTTGTTAGAATTTTGATTAAAGGTATAATTTTGGAATAAAACCAATTTAAACAAACTATTGACAGTACTGCTCACCCAATGACAACCTGAAGTGATTAAAACAGCTATTAAGAAATTCAAGAGGCTTCATGATGTAACTAGTGAAAGGTCACATATGAATCCAAGAGTTTGATCTCTCAGTCTCTAACCACTCTGAATGCAGTGAGCGTCCTGTGTATTTCATATGATGTGCGGTTCCCAGGTGACATTTCCGTTGGAAACCCTCACTGACTGACCTCGGATACTCACCACACAACATAGGCCCCCTAGATTACAATCACCGGCTGGCGTACATCTGAAAATACACACCAACCGACCGGTCTCAGTTAACCTAACTCACACACATCTCAGCCGTGACATCTCAGCCGATTgttagagagaaagaaaaaaatgaaAGATGCAAGTTAACAAATGCAGATGGCATGGTTGTTCCTGTTTTGTTTTCTTCCTGCTCCTTTCTGTTTATgtgtcgtcgtcccccccccaACCCACCTCTCGAAACCCCCCTCGGATCTGCAGGAGTTCACACGATCAAGCAATGTACCCAGGTAATTACCGCACATTGTCAAATAAAGCGACCACTGATTCAAATGAGGAGTGAAATATCAAAGAGCAGCGTTGCCTTTGCAGCCAGCCACTTATCCAcataggagacagagaggagatctgAGGCGCAGGGGgacctgcagagaggagaggcacTGACAACAGTCAGACGCCAATTCTTTAGATAAATATCACCGTAACCAAACATGCTGGAGTTCACctattatataataatatagcATGTACCACAAACATTCTAGACGTCCATTATCAACACCTCATATCCTCAGGGTGACCGTGAGAGCAACCTTACCAAGAGATATTCAATACATTTCTGATTACACTTCTGGTTCACTATCCCATGAGTCAACtcaaaggtcaaaggttgtcaATCTCACCAGTCAGTCTGGTTGTTGTGGTGAAGCAGTGCCTTCTGGGCAATCAATTACTGCTGTATCTGAACATGACAGGGTAGTCACACAACATTTTATGGCATCTTGTCACATACAAAGTTATACCCATGTAAGTATATGATTTACTGGTACCTAGTTTTTAATAACTAAATTATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005037707.1 True 6348 mRNA 0.39 2 37029254 37036523

Neighbor

gene id symbol gene type direction distance location
LOC110497753 spred1 coding downstream 188454 36654523 ~ 36840800 (-)
fam98b fam98b coding downstream 271770 36748853 ~ 36757484 (-)
LOC110497751 LOC106601420 coding downstream 289625 36719921 ~ 36739629 (-)
LOC110497749 LOC106601399 coding downstream 354722 36641587 ~ 36674532 (-)
LOC110498571 NA coding downstream 436214 36590933 ~ 36593040 (-)
cdin1 cssa01h15orf41 coding upstream 130247 37166770 ~ 37243458 (-)
stxbp6 LOC106601569 coding upstream 624909 37661432 ~ 37821260 (-)
LOC110497761 LOC106601584 coding upstream 798138 37834661 ~ 37916564 (-)
ddhd1a LOC106601609 coding upstream 887986 37921022 ~ 37957112 (-)
LOC110497764 NA coding upstream 923626 37960149 ~ 37982215 (-)
G1619996 NA non-coding downstream 5448 37023598 ~ 37023806 (-)
G1619916 NA non-coding downstream 7528 37021428 ~ 37021726 (-)
G1619905 NA non-coding downstream 12420 37016616 ~ 37016834 (-)
G1619895 NA non-coding downstream 21242 37007542 ~ 37008012 (-)
G1620034 NA non-coding upstream 53534 37090057 ~ 37091448 (-)
G1620015 NA non-coding upstream 80337 37116860 ~ 37147984 (-)
G1620003 NA non-coding upstream 103064 37139587 ~ 37142105 (-)
G1620058 NA non-coding upstream 112334 37148857 ~ 37149076 (-)
G1620079 NA non-coding upstream 126910 37163433 ~ 37163836 (-)
G1619119 NA other downstream 623918 36401554 ~ 36405336 (-)
LOC110498336 LOC106611177 other downstream 1632471 35392412 ~ 35396783 (-)
G1615810 hectd1 other downstream 3549818 33478593 ~ 33479436 (-)
G1615793 NA other downstream 3616037 33412219 ~ 33413217 (-)
G1622757 LOC106600509 other upstream 1920501 38957024 ~ 38958974 (-)
si:dkey-229e3.2 LOC106599591 other upstream 2328734 39365257 ~ 39370631 (-)
G1623037 LOC106586451 other upstream 2359545 39396068 ~ 39411784 (-)
G1623175 NA other upstream 2638916 39675439 ~ 39681529 (-)
LOC110497838 trmt5 other upstream 3430821 40467344 ~ 40547622 (-)

Expression


Co-expression Network