LOC110497773 (LOC106600707)


Basic Information

Item Value
gene id LOC110497773
gene name LOC106600707
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 38350810 ~ 38356450 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021574125.2
TGCCAAGTGtcttcttataagcttccggtttagagtcccgctccttgaaagcagcagctctaccctttagctcagtgagaatGTTGTCCATGGATTCTGGTTGGGGCATGTACGtactatttcttattgttgttgccttgtcaagaaggaacctgcaagtaagcatttcgttggatgATGTATCCCATACATACTAGTAAAATAACTTGCGCAATTTAGGCCATCGTTTCTCGGTCATCATGCAAACGGCCACCTTTGTGACGCTAACCACAATAAATATAAATCACAATAATGGAATTTGCAGTTCGCCTTCTAAATAAAAGTCCCCTTTGAAACGGATCCAAATAGTGGAATAAtgctaaacaaggttggaatgttatatAACTTAAATGGATacaataattaattaatttcacAAGAAACTGTAAACAACGTTCAAATCCCACTGTGACTGCataattgcattgggggcatagtTATTCAATATACAGCCTAACCCTCAAACTCAAGGTGGCATTCTGCCTTACCCCTACAGTTTTCATCCATTAGCTTTTCCCACGACTACAATCCCAACACTGTATTTTAACGTTTAGAAATACCAATAATCGTTGCTTGCGATACGGCTTTAGAAACATATGGGCCTCATCTTTCATCAGAAAGAATCCTTTAAATAAAAATGATTAACTTACTGTAGTAGTTTTGCACATATCCATAAAGCTATGGGTACCTCCATCCGACGAAACTACGCTTCTACTACACTTCCCGAGTTATGTTTACACACGGGTGTTCGGAGCATGCTAGATATGTAATTAGCGCAGGTGGTAGTTCGCCTCATGTCTTCCGTAAACAAGCATTGTAAACATGAAAATATGCccgtgtgggaacactaaccctatcaagCTTCACAGGCCACACAAGACACATCCACAGCTGTGCGGAAATGACACTGCAGGCGCGCGCCCCGACACGTCACGCGAGACGACACAGACCCCCCTTCCAAAAAAGGAGAAACACGAACAGTGTGAAATTCCCACGGCAGAGATGTTGACCACGTCTTCCATTACTGCAAAGGACTACATTAAACCGTAAAGGATATGAATTCCTCTGACCATAGGGAAAACACAGATGGCGAAATGCTGGAGATAGAGCGAGAACCCATTCAAGACATCAAGACGGAGACAGATGAATGTTCTATTAGTGAGACAACTGAAGGACCCCGAAGATGGTACCTTGGAACTAGTGAGGCCACCAGGAAACGTACTGCCAAGGACATGGGCTGTGACTCACACAATTCTAAACTGCTCCAGTCTACCAGCAGCAAAAGAGTCAGGGTCTCTAGTGAGGCAGGGCGACGCTTGCTGAGGAGATTGTCTGAAGAGTCCACAAGGCCACAATCTCTCTGCCTGACATCTGCAGAGAAGGACCCTGCCCAGGAGAAGACTATAGCCTCTTACAGAAAGCCTCTCTACAGCATCTCTCACAGAATCACAGAGAAGAAGCACATATCAAGCCTGGACCAGCAGGCTCAGCATGAGGGAGGAGTGCAGCTAAGCTACAGCAATATCTTATCCCCTCAACTGGTCAATACAGGGGAGCACAGCCGAAGTGAACCCCTCTCTGCCCTGGGGGCAGCAGGGTCCATGTCTTCAACAGACTCTAATCTATACTCCCTCATTGAGAAGATGTTTTTCATCCTCAATACGCTTAACTCAAGCATGACCCAACTGCACAGCAAGGTGGATCTACTTTCCCTGGAGGTCACTCGCATCAAAAAACAGGTCAAACCCTCAGAGATGGCAACTGAGTTCCAGCCTCCTCCAGAATACCTGTTAACAAGTGAGGAGCTGAGTCAACTGATGGAGCAGACATCAAATGCTGGCGAGTTGGGTTGTCGACTGCTAGTACATCTCTTCCCAGAACTTTTTAAAGCCAAGGAGTGCACTCCTGGTTGTATTGCCAACAAGAGAACGTTGGATTCCCTACAGCTGCAGCTAATACGCAACTATGTGAAGGTGTGTTTTCCTCTGGTAAAGAATAACAACATTTGGCAGGATGAATGCCTATTACAGATTAATAACTTCTTTAACCGCTTCTGGGCTCAGAAGGATATGGAGAGCGGGCCACAGTCATGTGGGAGACAGACTATTACAGACTTTGGTTTAAAAGCTGAACGGAACCAGCCCTGCCATTTTATAAATGAGGAGGGGCAAGAAGTGCACCTCGACTTAGACTCCAATAGTGACCACACCAACAATAAAGTAGTAGTGCCAGACCTTGTGTTTGACACTCAGGAGGTTGGAGAGGATCTTGATAAGCTCTCCTCCCCTGAAGACTTTATGTTTCTTGTAAACAGAGTTTTCCCAGAGGTTTTTGAGGAGGGGAAAttactagagggtagtgtgggaAAGATGATCCTGGACTCGGACAGGATAGAGATTATCCGTAAGTACATGGAAGCTAATTTTCCTGACGTCCCAGAGGATAGTtggctgcatgtgtgtgtgcagcgCATAGAAGATGCAATAGAGGGTTATCACAGTAACAGTAATGGCAGTGAGCCTGAGAACATGAACGATGAGAGCTATGGCTCCACAAGCCTCCCTGATGATGTCTCTATCATCAAGATCAGTGACATGTGTGACTACGAGAGACCAGGTCATAGGTCAAAAAAGTCGTTGCTTGTGCCAGTCGATTTTGAACAACTTGAGATCCCCCTACCAGATTTCAGTGTGCCTCAAGAGTATCTGCTCTCTAGGGAGCAACTGAGGAACAACTATGACTGTAGCTTGTCAATTGGGAACTTTGCCTCTCGCCTCTTGGTACTTACATTCCCTGAGCTCTTCACCTACGAGAACACACGGAAGCATTACAACTGTAGTGGCTCTCTCGGGAAGAAACAGCTTGATCCTGTGCGGGTCAACCTTATTCGCCACTATGTAGAGCTACTATATCCACAGGCCAAGAATGACAGAGTGTGGACCCTGGAATTTGTGGGTAAACTGGACGAGCGGTGCAGGCGACGAGACACGGAACAACGGAGGTCGTACCAGCAGCAACCCAAAGTCTATGCTCCTGAGTTGGAGCAAGGGCCTGTGGACTTTGTGGCTGCTTGCCAAGTGAACCAGCTCAACACAGAGCACTTGAAGGAGGACTTTGAGATCCCTCCACTACCCCCTGAAAAAAGTAGCAAAGACTTCTGCATGATCCCCCTGGAGGAATTGAAGGTGTCGATTCCAGACTTCCCAGTGCCTTTGGTCTACTTGCTCTCAGACACTGAGGTGCGAGAGATTGTCCAGCAGAGCCTTTCAGTGGGAAACTTTGCCGCCCGCCTACTGGTGCGCCTCTTCCCTGAGCTCTTCACTCAGGAGAACCTGCGGCTTCAGTATAACCATTCAGGCGCCTGCAACAAGAAACAGCTGGATCCAGTGCGTCTCAGGCTCATCCGCCACTATGTAGAAGCCGTGTACCCAGTTGAGAAGATGGAGGAGGTCTGGCATTATGAATGTGTGCCAAGCATAGATGAGCGATGCCGGCGGCCCAACCGCAAGAAGTGTGACATATTGAAGAAGGCCAAGAGATCAAATACTGTGTCCTAGTAGCAAAGCTAAAggcaatttattttttattctaaaTATTTGCACAAGTACAGAAGCTGAATAGCATAGTGGAGCCTTTGCACACTGTCCTGTGTAGGATAAGGCCAACTTGTAAAGGCATTTCATTAGTACTCAATGTATTTGTAATATTGAACTACAGTATTAGTTTAGTTTTTCATCGTCTGCTTGTTTGAGATTATAGACTGTATGTATACACCAAAACAAGTGTCATAGCTCATCTAATTTACCCTGTATATAAGATGTGTAGCCTTAACAATAACCATGTAAATAGTACAAAGACGTCACAGGCAAAGATGGATAAAAATTGTGATTGTTTTTTTTCCATTGGTTGTGGCACTACTGGTCTTTTATAACAATGTTCTACCTTCTTATAGAATTTTGTATTATAAATATGTATTAAACCATGGCAACAGA

Function

NR:

description
BEN domain-containing protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021574125.2 True 4031 mRNA 0.45 5 38350810 38356450

Neighbor

gene id symbol gene type direction distance location
LOC110497772 LOC106600726 coding downstream 9565 38335359 ~ 38341245 (-)
LOC110497764 NA coding downstream 368595 37960149 ~ 37982215 (-)
ddhd1a LOC106601609 coding downstream 393698 37921022 ~ 37957112 (-)
LOC110497761 LOC106601584 coding downstream 434246 37834661 ~ 37916564 (-)
stxbp6 LOC106601569 coding downstream 529550 37661432 ~ 37821260 (-)
LOC110497775 pdss2 coding upstream 10301 38366751 ~ 38424304 (-)
c19h2orf50 cssa01h2orf50 coding upstream 160884 38517334 ~ 38521474 (-)
LOC110498572 NA coding upstream 175335 38531785 ~ 38532831 (-)
LOC110497781 NA coding upstream 253947 38610397 ~ 38614837 (-)
LOC118941360 LOC106600306 coding upstream 283743 38640193 ~ 38644960 (-)
G1621533 NA non-coding downstream 17329 38331843 ~ 38333481 (-)
G1621456 NA non-coding downstream 153347 38197241 ~ 38197463 (-)
G1621388 NA non-coding downstream 286625 38063954 ~ 38064185 (-)
G1621386 NA non-coding downstream 289384 38061212 ~ 38061426 (-)
G1621375 NA non-coding downstream 293943 38053800 ~ 38056867 (-)
G1621606 NA non-coding upstream 91719 38448169 ~ 38448373 (-)
G1621607 NA non-coding upstream 92769 38449219 ~ 38449450 (-)
G1621575 NA non-coding upstream 100299 38456749 ~ 38459705 (-)
G1621638 NA non-coding upstream 147987 38504437 ~ 38504732 (-)
G1621639 NA non-coding upstream 149368 38505818 ~ 38506045 (-)
LOC110497753 spred1 other downstream 1582111 36654523 ~ 36840800 (-)
G1619119 NA other downstream 1945474 36401554 ~ 36405336 (-)
LOC110498336 LOC106611177 other downstream 2954027 35392412 ~ 35396783 (-)
G1615810 hectd1 other downstream 4871374 33478593 ~ 33479436 (-)
G1615793 NA other downstream 4937593 33412219 ~ 33413217 (-)
G1622757 LOC106600509 other upstream 600574 38957024 ~ 38958974 (-)
si:dkey-229e3.2 LOC106599591 other upstream 1008807 39365257 ~ 39370631 (-)
G1623037 LOC106586451 other upstream 1039618 39396068 ~ 39411784 (-)
G1623175 NA other upstream 1318989 39675439 ~ 39681529 (-)
LOC110497838 trmt5 other upstream 2110894 40467344 ~ 40547622 (-)

Expression


Co-expression Network