LOC110497790 (gnpi)


Basic Information

Item Value
gene id LOC110497790
gene name gnpi
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 38892389 ~ 38898821 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021574154.2
CGCAAGCACGCCTATCGTGATCCTCACAGCTTTCACTACCCAGCACTTTGGAAATCTCAGTTTGGACATTTGAAATAGATTTTTCAATATTGGTAATCCGATCAGCTGCTCCTCATTAACAAATTGTACAAGATACGAAGGGATATTCTCAGAACTGTACATTACTTCGCTCCGTTCTCCATTCTTTTGGACAATATTCAATATATCCTTGATTCTACCGCCATTACATTCACAATCCACACCAGCTTCCGCTTTCTTTTCCTCCAGAAGTCCCCCTTCACTAAGTAACCAATGAATGAGCACGTACTGGTCGTATGAACAACCGGAGGTGAATAACGTGATCAGTACAGTGTGTTTACATTGTGTCGCCAGAAAGCAAGAAAAAACGGTAAACTTGAAATAGCCCAGATTCACAACGAGACCAAGAGGATCTCTCCATTCAACACCTCCAAAATGAGACTGGTGATCCTGGAGGACTATGACCTGGCCAGTGAATGGGCAGCCAAATACATCCGCAACAGAATCATCCAGTTCAAGCCCAGTGCTGACAGATACTTCACTTTAGGATTACCCACAGGAAGCACTCCTTTTGGCTGTTACAAAAAGTTGATAGAGTTTCACAAGAATGGGGACCTCTCTTTTAAATATGTGAAGACCTTCAACATGGATGAGTATGTGGGCCTGCCCCGGGCCCACCCAGAGAGCTACCACTCCTACATGTGGAACAACTTCTTCAAGCACATTGACATCGATCCAGCTAATGCCAGTATCCTGGATGGCAATATCACTGACCTGGAAGCAGAGTGTGAGGCCTTTGAGAAGAAGATCACCCAGGCTGGGGGAATCGACTTGTTTGTGGGAGGTATCGGACCAGACGGCCACATTGCCTTCAATGAGCCAGGCTCCAGTCTAGTCTCCAGGACCAGAGTGAAGACTTTAGCAAAGGACACCATCGTGGCCAATGCCCGTTTCTTTGGCAACGACCTGTCAAAGGTCCCCACCATGGCCTTGACTGTGGGTGTGGGGACAGTCATGGATGCCCGAGAGGTTATGATTCTTATCACTGGAGCCCACAAAGCCTTTGCCCTGTACAAAGCAATAGAGGAGGGGGTCAACCACATGTGGACCGTCTCAGCCTTCCAGCAGCACCCACGCACCATCTTTGTGTGTGACGAGGACGCCACACTGGAGCTCAGAGTCAAAACAGTCAAGTACTTCAAAGGTTTGATGCATGTTCACAACCGACTGGTGGACCCAGTACTCAGCATAAAGGACCAATAATGGAGAATAAAACCAAGTCAGAGAATTACAGACCTCAAAATGGTGGATGGACCCAGTTGTTGGTAGGCTACAACCAGCATGACAATGTGCCAGAGAGATTGTTTGTCAGCACTTCAGTTGAGGGGCTGTGGTTTAAGGCTGCCATAACAACTAACCAAGCATTACAGTGCATGAGATTTTCTCAGTTTGTTACATTGCATTAGGATACTATGAAGGCTAACTGTAAATGCCCCCTCAGCTGATATGTTAAAGATGCCATGAATTCTCATATACAACTGTTACCAATATATTATGAGGTCAGAATCTTTGCAGTGTTAGTCTCAAACAGATTTATTTGCCTTCTCGACTACtcttctttcttccttccttctgcACAATCTAGAGACGGGATGGATGAAAGCAAAATGTTTAGACCAGCTTAGATGAAATAAATCCCGTTTGGGTTGTTGAGACCTGTTTAACAGGGAAACATACAACACTATAGTTCCTTTACACTCCATGTCATTTGTAGCTTTGAACACTCCGTAGGTTGGTTTACCTGACAGTCAGTTCTACTTTCCAAGTCGCCACCGCAGTGATTTACACTCAATATACTGTCTTTTGTATCCGAAATGTCATTCTTGGCCATGTTGTATGCTCTCACAAGATTGTATCGGCAATCATTTTATGTCAAGGCATCATGTTAACTTTCAAGCATCTCTAATCAGTCATTAATTtaccttttttttgttgttgttttgtagaacATTCTACCAGAACAAGTATGTTTTCATTTCAATGTAACTCAATTTTTCCCAACTACTGGGCTTACAAGATTACCGAGTCTTTTAGAAATTAATTGTGCACATAATGTACTGTAACTCATAAAAATGCTTCATACCGGCTGTATTTGTACTTTGAAAGTGatgtatcttgaaaacttgattgctgatatgcaaaacattttggaactATATCagcaatggactaatgaaacaaataccaaaatatagtttttctGAGTTATTATCTCTCAAGGTATCGGACCAGACGGCCACATTGCCTTCAATGAGCCAGGCCCCAGTCTAGTCTCCAGGACCAGAGTGAAGACCTTGGCGAAGGACACCATCGTAGACAATGCCCGTATCTTTGGCAACGACCTGTCAAAGGTCCCCTCATAAATGGTTTAGTTCTATAATTTCAATGAAGATGCTTCTTGTAAAGAAATGTCATTTATTTAGTATTACTTATTCAGAGTTGTATACTCAGGAGTCAGATTTAGGGGGTTATTATTTTATGGAAAGAGGACATATTATCTAGTGCAAATATTGAGTTTTGTTACATTCATTTTTCTGAAATGCATGATACACATGGGAATGAAGGCAACACTATTGGGAGTGAAATATGAATTTCTAGTTTCACTGTTGTACACTAGGTGTCACTCTCTACTAAGATACAAAATCAGAGGGGCCAGTACCAATTGATGAGAGGAATAGTATACAATTTTTCGCATGTTCGTGCTCATCTGAACTGTGCTGGCTCAGATATTTTTAACATTGTCATTCCCAGCATGGCTCCACAAACTTTAGTGGATGCGAAACCAGGCCAGCACTGTACGGCTTGGTTCATTAGACATTTCCTatagcttttccttcactttgaaAGCATGGAGTAGATATTGTTTACATCTTTCTTTTGAGATTGTCTTTCTACACAGCTTTAGATTTGTCTGCATTAGTTCTATCCAATTTATGCTTATTACTAATGCTTCTGCTAGCAAAACAATACGCTGTAAATGGATTACACCACCTCTTCTGTTTAATTTCTTCATTCATGGTGTTGTTCGGATCTTAGCTAGAAACCTGCCGCCACTAGCAGAGCATAACCTTGACAGAGGGAGACAATCTGGTTTTCACAACTGTAAAACTACCAGACAGATTCCAAGCACAGGTTGATATTTCCTGTTTACTGATTAAGACATCTCTGCTGCATTAAAATTGCTGTGGCTAA

Function

NR:

description
glucosamine-6-phosphate isomerase 2

GO:

id name namespace
GO:0006044 N-acetylglucosamine metabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0004342 glucosamine-6-phosphate deaminase activity molecular_function

KEGG:

id description
K02564 nagB, GNPDA; glucosamine-6-phosphate deaminase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021574154.2 True 3270 mRNA 0.42 7 38892389 38898821
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110497787 LOC106600539 coding downstream 130229 38709218 ~ 38762160 (-)
LOC110497783 LOC106600563 coding downstream 218142 38654186 ~ 38674247 (-)
dapp1 dapp1 coding downstream 238356 38645382 ~ 38654033 (-)
LOC118941360 LOC106600306 coding downstream 247429 38640193 ~ 38644960 (-)
LOC110497781 NA coding downstream 277552 38610397 ~ 38614837 (-)
LOC110497791 LOC106600514 coding upstream 12460 38911281 ~ 38926911 (-)
lrit3b LOC106600744 coding upstream 36594 38935354 ~ 38939611 (-)
ampm1 ampm1 coding upstream 86976 38985797 ~ 38988755 (-)
enpp4 enpp4 coding upstream 325869 39224690 ~ 39231092 (-)
cdc5l LOC106599718 coding upstream 343377 39242198 ~ 39263880 (-)
G1622673 LOC106600519 non-coding downstream 42049 38846752 ~ 38850340 (-)
G1622712 LOC106600528 non-coding downstream 61999 38827895 ~ 38830390 (-)
G1622592 odc1 non-coding downstream 264461 38626013 ~ 38627928 (-)
G1621664 NA non-coding downstream 349078 38542967 ~ 38543311 (-)
G1622763 NA non-coding upstream 11461 38910282 ~ 38910570 (-)
G1622764 NA non-coding upstream 12124 38910945 ~ 38911226 (-)
G1622771 NA non-coding upstream 28586 38927407 ~ 38927623 (-)
G1622772 NA non-coding upstream 28886 38927707 ~ 38928311 (-)
G1622775 NA non-coding upstream 32480 38931301 ~ 38932352 (-)
LOC110497753 spred1 other downstream 2123690 36654523 ~ 36840800 (-)
G1619119 NA other downstream 2487053 36401554 ~ 36405336 (-)
LOC110498336 LOC106611177 other downstream 3495606 35392412 ~ 35396783 (-)
G1615810 hectd1 other downstream 5412953 33478593 ~ 33479436 (-)
G1615793 NA other downstream 5479172 33412219 ~ 33413217 (-)
G1622757 LOC106600509 other upstream 58203 38957024 ~ 38958974 (-)
si:dkey-229e3.2 LOC106599591 other upstream 466436 39365257 ~ 39370631 (-)
G1623037 LOC106586451 other upstream 497247 39396068 ~ 39411784 (-)
G1623175 NA other upstream 776618 39675439 ~ 39681529 (-)
LOC110497838 trmt5 other upstream 1568523 40467344 ~ 40547622 (-)

Expression

LOC110497790(gnpi) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 20.
End of interactive chart.

LOC110497790(gnpi) Expression in each Bioproject

Bar chart with 21 bars.
LOC110497790(gnpi) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 600.
End of interactive chart.

Co-expression Network